Wall clock time and date at job start Wed Apr 1 2020 05:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46674 * 2 1 4 4 H 1.09001 * 109.52656 * 54.92207 * 3 2 1 5 5 C 1.53188 * 109.49800 * 294.83864 * 3 2 1 6 6 N 1.46933 * 108.77267 * 185.41603 * 5 3 2 7 7 C 1.34774 * 120.62733 * 233.62965 * 6 5 3 8 8 O 1.21626 * 120.00462 * 353.85973 * 7 6 5 9 9 C 1.47326 * 119.99889 * 173.85620 * 7 6 5 10 10 C 1.36573 * 126.21357 * 172.98628 * 9 7 6 11 11 N 1.34867 * 106.78777 * 179.81299 * 10 9 7 12 12 C 1.36304 * 107.85878 * 0.49792 * 11 10 9 13 13 N 1.29786 * 108.92439 * 359.64124 * 12 11 10 14 14 C 1.51106 * 123.90028 * 179.64734 * 12 11 10 15 15 C 1.53387 * 108.19341 * 344.05230 * 14 12 11 16 16 C 1.53141 * 109.25088 * 48.95088 * 15 14 12 17 17 C 1.46583 * 127.50066 * 180.29578 * 11 10 9 18 18 C 1.46922 * 118.74062 * 53.61032 * 6 5 3 19 19 C 1.53199 * 108.76567 * 306.38366 * 18 6 5 20 20 C 1.53037 * 109.31068 * 54.65465 * 19 18 6 21 21 H 1.08998 * 109.46695 * 58.62730 * 20 19 18 22 22 N 1.46499 * 109.45978 * 178.60271 * 20 19 18 23 23 C 1.36931 * 120.00176 * 275.02927 * 22 20 19 24 24 H 1.08002 * 120.00061 * 359.97438 * 23 22 20 25 25 C 1.38811 * 120.00336 * 179.97438 * 23 22 20 26 26 N 1.31622 * 120.00272 * 179.97438 * 25 23 22 27 27 Si 1.86802 * 119.99759 * 359.97438 * 25 23 22 28 28 H 1.48500 * 109.46937 * 269.99732 * 27 25 23 29 29 H 1.48501 * 109.47075 * 30.00136 * 27 25 23 30 30 H 1.48502 * 109.46942 * 149.99904 * 27 25 23 31 31 H 1.09002 * 109.47193 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47131 * 299.99530 * 1 2 3 33 33 H 1.09000 * 109.47811 * 59.99756 * 1 2 3 34 34 H 1.08996 * 109.46711 * 240.00525 * 2 1 3 35 35 H 1.08997 * 109.47329 * 120.00074 * 2 1 3 36 36 H 1.08998 * 109.58689 * 305.20239 * 5 3 2 37 37 H 1.08994 * 109.58500 * 65.63256 * 5 3 2 38 38 H 1.08003 * 126.60369 * 359.97438 * 10 9 7 39 39 H 1.08995 * 109.71886 * 103.73116 * 14 12 11 40 40 H 1.08996 * 109.71662 * 224.38075 * 14 12 11 41 41 H 1.09002 * 109.50547 * 168.88227 * 15 14 12 42 42 H 1.08994 * 109.50930 * 288.97558 * 15 14 12 43 43 H 1.08999 * 109.45905 * 50.21712 * 16 15 14 44 44 H 1.08997 * 109.45848 * 170.19063 * 16 15 14 45 45 H 1.08994 * 109.58415 * 43.27815 * 17 11 10 46 46 H 1.08994 * 109.69646 * 282.92386 * 17 11 10 47 47 H 1.08999 * 109.58665 * 66.17458 * 18 6 5 48 48 H 1.08995 * 109.58596 * 186.45848 * 18 6 5 49 49 H 1.08997 * 109.50317 * 294.69586 * 19 18 6 50 50 H 1.08998 * 109.48612 * 174.59792 * 19 18 6 51 51 H 0.97005 * 119.99625 * 95.02424 * 22 20 19 52 52 H 0.96997 * 120.00067 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6047 1.9829 0.8407 5 6 1.6384 2.1268 -1.3104 6 7 2.2450 3.4645 -1.3506 7 6 1.4854 4.5566 -1.5671 8 8 0.3071 4.4332 -1.8422 9 6 2.0825 5.9000 -1.4706 10 6 1.4729 7.0789 -1.7929 11 7 2.3682 8.0586 -1.5529 12 6 3.5140 7.4760 -1.0997 13 7 3.3417 6.1906 -1.0505 14 6 4.7601 8.2451 -0.7266 15 6 4.6448 9.6575 -1.3136 16 6 3.2748 10.2420 -0.9576 17 6 2.1835 9.5010 -1.7375 18 6 3.6951 3.5890 -1.1498 19 6 4.0733 2.8884 0.1590 20 6 3.5652 1.4452 0.1257 21 1 4.0007 0.9264 -0.7283 22 7 3.9542 0.7621 1.3620 23 6 5.1921 0.1860 1.4655 24 1 5.8815 0.2348 0.6357 25 6 5.5609 -0.4607 2.6371 26 7 6.7506 -1.0150 2.7364 27 14 4.3686 -0.5445 4.0727 28 1 4.5705 0.6342 4.9531 29 1 2.9751 -0.5462 3.5595 30 1 4.6126 -1.7881 4.8468 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3635 0.5138 -0.8899 34 1 1.8932 -0.5137 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 1.9963 1.5378 -2.1548 37 1 0.5532 2.2162 -1.3584 38 1 0.4668 7.2029 -2.1654 39 1 4.8451 8.3036 0.3584 40 1 5.6373 7.7462 -1.1385 41 1 5.4294 10.2896 -0.8978 42 1 4.7509 9.6111 -2.3974 43 1 3.0981 10.1278 0.1119 44 1 3.2525 11.3000 -1.2185 45 1 1.2031 9.7947 -1.3627 46 1 2.2591 9.7485 -2.7963 47 1 4.2207 3.1191 -1.9811 48 1 3.9671 4.6430 -1.0944 49 1 3.6187 3.4149 0.9982 50 1 5.1574 2.8899 0.2721 51 1 3.3348 0.7181 2.1072 52 1 7.0081 -1.4672 3.5550 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037854408.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:58:34 Heat of formation + Delta-G solvation = 37.688717 kcal Electronic energy + Delta-G solvation = -31531.688912 eV Core-core repulsion = 27532.195099 eV Total energy + Delta-G solvation = -3999.493813 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.68598 -39.76280 -37.71135 -36.84106 -34.68345 -33.85057 -33.59163 -31.62624 -30.49552 -29.67158 -28.95931 -28.66204 -25.68802 -24.57346 -23.79033 -22.91065 -22.61951 -21.79592 -20.64336 -19.86158 -19.46221 -18.97798 -17.52644 -17.25513 -16.60536 -16.28898 -15.78026 -15.13051 -14.86439 -14.73014 -14.41447 -14.37220 -14.14304 -14.10769 -13.96405 -13.57879 -13.47559 -13.24285 -13.05778 -12.76244 -12.53656 -12.30714 -12.19804 -11.96014 -11.70679 -11.64915 -11.59776 -11.47734 -11.27803 -10.98415 -10.90291 -10.62185 -10.34742 -10.23169 -10.11006 -10.03399 -9.95596 -9.59546 -9.48547 -9.34801 -8.73566 -8.68122 -8.20433 -7.14951 -5.69781 -3.03560 1.49327 2.22829 2.30314 3.31397 3.42924 3.46826 3.50532 3.59948 3.82585 4.00295 4.09323 4.14091 4.53688 4.66015 4.68305 4.80004 4.83020 4.88133 5.10169 5.17634 5.19250 5.21096 5.30396 5.35804 5.38071 5.51464 5.52706 5.60614 5.62002 5.68529 5.75209 5.77944 5.85375 5.90079 5.93883 6.11884 6.15798 6.18631 6.30136 6.39707 6.45852 6.52612 6.61995 6.62898 6.73894 6.85510 6.96776 7.10685 7.22355 7.60966 7.82219 8.07859 8.43270 8.49924 9.29081 10.02141 10.23260 11.48950 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012232 B = 0.003018 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.452821 B = 9276.367773 C =10899.680524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.113 4.113 3 C -0.107 4.107 4 H 0.067 0.933 5 C 0.120 3.880 6 N -0.589 5.589 7 C 0.601 3.399 8 O -0.559 6.559 9 C -0.053 4.053 10 C 0.033 3.967 11 N -0.454 5.454 12 C 0.211 3.789 13 N -0.447 5.447 14 C -0.037 4.037 15 C -0.126 4.126 16 C -0.136 4.136 17 C 0.101 3.899 18 C 0.064 3.936 19 C -0.141 4.141 20 C 0.186 3.814 21 H 0.054 0.946 22 N -0.746 5.746 23 C -0.235 4.235 24 H 0.090 0.910 25 C 0.003 3.997 26 N -0.937 5.937 27 Si 0.881 3.119 28 H -0.286 1.286 29 H -0.277 1.277 30 H -0.293 1.293 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.187 0.813 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.090 0.910 45 H 0.093 0.907 46 H 0.088 0.912 47 H 0.053 0.947 48 H 0.149 0.851 49 H 0.054 0.946 50 H 0.075 0.925 51 H 0.360 0.640 52 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.253 24.998 -11.193 28.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.127 4.127 4 H 0.086 0.914 5 C -0.003 4.003 6 N -0.319 5.319 7 C 0.389 3.611 8 O -0.438 6.438 9 C -0.181 4.181 10 C -0.106 4.106 11 N -0.137 5.137 12 C -0.051 4.051 13 N -0.166 5.166 14 C -0.076 4.076 15 C -0.164 4.164 16 C -0.174 4.174 17 C -0.021 4.021 18 C -0.058 4.058 19 C -0.182 4.182 20 C 0.077 3.923 21 H 0.072 0.928 22 N -0.388 5.388 23 C -0.365 4.365 24 H 0.108 0.892 25 C -0.192 4.192 26 N -0.585 5.585 27 Si 0.712 3.288 28 H -0.213 1.213 29 H -0.203 1.203 30 H -0.219 1.219 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.107 0.893 38 H 0.204 0.796 39 H 0.112 0.888 40 H 0.119 0.881 41 H 0.103 0.897 42 H 0.090 0.910 43 H 0.096 0.904 44 H 0.109 0.891 45 H 0.111 0.889 46 H 0.106 0.894 47 H 0.071 0.929 48 H 0.165 0.835 49 H 0.073 0.927 50 H 0.094 0.906 51 H 0.192 0.808 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.084 24.369 -11.145 28.295 hybrid contribution -1.323 0.312 0.966 1.668 sum -10.407 24.682 -10.179 28.655 Atomic orbital electron populations 1.21852 0.96744 1.01045 1.01417 1.21466 0.94455 0.95865 1.03333 1.21813 0.97791 0.96028 0.97054 0.91447 1.21723 0.99229 0.81843 0.97486 1.47940 1.09282 1.05787 1.68911 1.16933 0.85024 0.82495 0.76673 1.90746 1.15828 1.86481 1.50770 1.20627 0.92335 0.93894 1.11264 1.22372 0.96804 0.86947 1.04468 1.45312 1.12061 1.07639 1.48659 1.23747 0.90035 0.88823 1.02521 1.69959 1.15946 1.10960 1.19780 1.20298 0.91805 0.93099 1.02370 1.21686 0.97185 0.95688 1.01846 1.21913 0.94039 1.00260 1.01179 1.22087 1.01289 0.76552 1.02142 1.23022 0.78007 1.07350 0.97459 1.22482 1.02026 0.97711 0.95968 1.20228 0.90589 0.91243 0.90271 0.92792 1.42788 1.16373 1.66442 1.13206 1.19074 0.90412 1.26688 1.00299 0.89235 1.24636 0.96436 1.00540 0.97634 1.69699 1.19369 1.42005 1.27441 0.86591 0.81265 0.77165 0.83774 1.21275 1.20292 1.21926 0.93139 0.93162 0.92906 0.91995 0.90506 0.91628 0.89327 0.79573 0.88810 0.88138 0.89699 0.91009 0.90373 0.89102 0.88878 0.89381 0.92879 0.83453 0.92696 0.90615 0.80750 0.93212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.67 37.16 0.36 -1.80 16 2 C -0.11 -1.88 5.31 -26.73 -0.14 -2.02 16 3 C -0.11 -1.85 1.92 -90.49 -0.17 -2.03 16 4 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 5 C 0.12 1.93 5.31 -3.71 -0.02 1.91 16 6 N -0.59 -9.77 2.97 -174.07 -0.52 -10.29 16 7 C 0.60 10.14 7.68 -12.57 -0.10 10.04 16 8 O -0.56 -10.40 16.33 5.25 0.09 -10.32 16 9 C -0.05 -0.77 6.72 -82.98 -0.56 -1.32 16 10 C 0.03 0.37 11.33 -16.82 -0.19 0.17 16 11 N -0.45 -4.02 3.11 -113.42 -0.35 -4.37 16 12 C 0.21 2.21 7.64 -154.64 -1.18 1.03 16 13 N -0.45 -6.18 7.67 -7.01 -0.05 -6.23 16 14 C -0.04 -0.25 6.33 -27.48 -0.17 -0.42 16 15 C -0.13 -0.49 5.95 -26.46 -0.16 -0.65 16 16 C -0.14 -0.43 5.93 -26.53 -0.16 -0.59 16 17 C 0.10 0.44 6.96 -3.87 -0.03 0.42 16 18 C 0.06 1.05 6.32 -3.71 -0.02 1.03 16 19 C -0.14 -2.64 5.66 -26.61 -0.15 -2.79 16 20 C 0.19 3.72 2.19 -67.89 -0.15 3.57 16 21 H 0.05 1.13 8.08 -51.93 -0.42 0.71 16 22 N -0.75 -17.84 4.13 -53.39 -0.22 -18.06 16 23 C -0.23 -6.62 10.41 -15.06 -0.16 -6.78 16 24 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 25 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 26 N -0.94 -29.69 13.97 55.49 0.78 -28.91 16 27 Si 0.88 22.59 27.74 -169.99 -4.71 17.88 16 28 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 29 H -0.28 -6.70 6.52 56.52 0.37 -6.34 16 30 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.70 6.70 -51.93 -0.35 0.35 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.08 1.46 7.22 -51.93 -0.37 1.09 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.09 1.44 5.77 -51.93 -0.30 1.14 16 38 H 0.19 1.70 8.06 -52.48 -0.42 1.27 16 39 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 42 H 0.07 0.28 8.12 -51.93 -0.42 -0.14 16 43 H 0.08 0.31 8.11 -51.93 -0.42 -0.12 16 44 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 45 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 47 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.15 2.35 3.66 -77.84 -0.28 2.07 16 49 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 50 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 51 H 0.36 8.63 5.37 -40.82 -0.22 8.41 16 52 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 LS Contribution 398.95 15.07 6.01 6.01 Total: -1.00 -35.43 398.95 -10.80 -46.24 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -8.72 Total: 8.31 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: -3.09 Total: -0.25 kcal Atomic # 7 Polarization: -67.50 SS G_CDS: -0.37 Total: -67.87 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.71 Total: 17.88 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.43 -10.80 -46.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037854408.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.925 kcal (2) G-P(sol) polarization free energy of solvation -35.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds