Wall clock time and date at job start Wed Apr 1 2020 05:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47213 * 2 1 4 4 H 1.08997 * 109.50064 * 304.93980 * 3 2 1 5 5 C 1.53195 * 109.49339 * 65.00447 * 3 2 1 6 6 N 1.46927 * 108.77219 * 174.58337 * 5 3 2 7 7 C 1.34781 * 120.62594 * 126.41505 * 6 5 3 8 8 O 1.21566 * 120.00067 * 353.00062 * 7 6 5 9 9 C 1.47714 * 119.99571 * 173.00089 * 7 6 5 10 10 C 1.41507 * 126.51487 * 172.89148 * 9 7 6 11 11 C 1.35363 * 105.50214 * 180.02562 * 10 9 7 12 12 C 1.50696 * 126.38459 * 179.97438 * 11 10 9 13 13 C 1.52998 * 117.50035 * 33.77317 * 12 11 10 14 14 C 1.53001 * 117.49921 * 325.10953 * 12 11 10 15 15 N 1.35041 * 107.22786 * 0.02562 * 11 10 9 16 16 C 1.46500 * 124.88168 * 180.02562 * 15 11 10 17 17 N 1.28467 * 110.23151 * 359.72693 * 15 11 10 18 18 C 1.46921 * 118.74191 * 306.38787 * 6 5 3 19 19 C 1.53195 * 108.77247 * 53.61066 * 18 6 5 20 20 C 1.53040 * 109.31426 * 305.36295 * 19 18 6 21 21 H 1.09003 * 109.46001 * 301.34725 * 20 19 18 22 22 N 1.46497 * 109.46104 * 181.38375 * 20 19 18 23 23 C 1.36938 * 119.99642 * 85.00281 * 22 20 19 24 24 H 1.08003 * 120.00516 * 359.97438 * 23 22 20 25 25 C 1.38817 * 119.99985 * 179.97438 * 23 22 20 26 26 N 1.31625 * 119.99842 * 0.02562 * 25 23 22 27 27 Si 1.86802 * 120.00062 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.46880 * 60.00106 * 27 25 23 29 29 H 1.48495 * 109.46869 * 179.97438 * 27 25 23 30 30 H 1.48500 * 109.47251 * 300.00097 * 27 25 23 31 31 H 1.09001 * 109.47249 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46853 * 299.99551 * 1 2 3 33 33 H 1.09000 * 109.47150 * 59.99787 * 1 2 3 34 34 H 1.09001 * 109.46853 * 240.00449 * 2 1 3 35 35 H 1.09002 * 109.47037 * 120.00983 * 2 1 3 36 36 H 1.09002 * 109.58893 * 54.79719 * 5 3 2 37 37 H 1.08998 * 109.58527 * 294.37349 * 5 3 2 38 38 H 1.08000 * 127.24771 * 0.02562 * 10 9 7 39 39 H 1.09008 * 115.54668 * 179.44235 * 12 11 10 40 40 H 1.09000 * 117.50000 * 359.97438 * 13 12 11 41 41 H 1.09001 * 117.50067 * 145.02364 * 13 12 11 42 42 H 1.09004 * 117.49909 * 214.98231 * 14 12 11 43 43 H 1.08996 * 117.49678 * 359.97438 * 14 12 11 44 44 H 1.08998 * 109.47070 * 90.00559 * 16 15 11 45 45 H 1.09005 * 109.46906 * 210.00072 * 16 15 11 46 46 H 1.08993 * 109.47359 * 329.99769 * 16 15 11 47 47 H 1.08997 * 109.58919 * 293.82153 * 18 6 5 48 48 H 1.08996 * 109.70614 * 173.46371 * 18 6 5 49 49 H 1.09000 * 109.49561 * 65.31889 * 19 18 6 50 50 H 1.09003 * 109.49354 * 185.41361 * 19 18 6 51 51 H 0.96998 * 119.99999 * 264.99955 * 22 20 19 52 52 H 0.96999 * 119.99420 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9817 -0.8423 5 6 1.6351 2.1279 1.3089 6 7 2.2417 3.4655 1.3495 7 6 1.4817 4.5577 1.5640 8 8 0.2707 4.4583 1.5993 9 6 2.1205 5.8757 1.7563 10 6 1.4623 7.1248 1.8498 11 6 2.4451 8.0398 2.0206 12 6 2.2643 9.5280 2.1736 13 6 1.0099 10.0162 2.9009 14 6 1.1310 10.1868 1.3844 15 7 3.6180 7.3704 2.0271 16 6 4.9355 7.9903 2.1886 17 7 3.4117 6.1113 1.8776 18 6 3.6923 3.5897 1.1524 19 6 4.0741 2.8879 -0.1547 20 6 3.5656 1.4448 -0.1217 21 1 3.9990 0.9266 0.7338 22 7 3.9577 0.7608 -1.3564 23 6 5.1956 0.1837 -1.4558 24 1 5.8830 0.2332 -0.6243 25 6 5.5670 -0.4650 -2.6256 26 7 4.7296 -0.5249 -3.6393 27 14 7.2559 -1.2515 -2.7615 28 1 7.4034 -2.2918 -1.7121 29 1 7.4049 -1.8755 -4.1008 30 1 8.3018 -0.2131 -2.5796 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5140 0.8899 36 1 1.9908 1.5395 2.1547 37 1 0.5498 2.2172 1.3540 38 1 0.3995 7.3093 1.7962 39 1 3.1812 10.1013 2.3113 40 1 0.3151 9.2609 3.2684 41 1 1.1012 10.9109 3.5168 42 1 1.3021 11.1936 1.0034 43 1 0.5166 9.5438 0.7543 44 1 5.1913 8.0295 3.2475 45 1 5.6820 7.4010 1.6561 46 1 4.9136 9.0015 1.7824 47 1 4.2158 3.1206 1.9855 48 1 3.9665 4.6430 1.0951 49 1 3.6220 3.4139 -0.9955 50 1 5.1586 2.8891 -0.2649 51 1 3.3405 0.7166 -2.1033 52 1 4.9890 -0.9785 -4.4565 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037867356.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:56:51 Heat of formation + Delta-G solvation = 87.494498 kcal Electronic energy + Delta-G solvation = -31181.835562 eV Core-core repulsion = 27184.501490 eV Total energy + Delta-G solvation = -3997.334072 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.91139 -39.78994 -37.66074 -37.55718 -34.65862 -33.84607 -33.47980 -31.63858 -30.66544 -29.37649 -28.90489 -27.49159 -25.19681 -24.06526 -23.51353 -23.14521 -22.79679 -21.96050 -20.72898 -20.38586 -19.66150 -18.86564 -17.38682 -17.03171 -16.68962 -16.46352 -15.71881 -15.37875 -14.98082 -14.77955 -14.62581 -14.15647 -13.94718 -13.80660 -13.57951 -13.29555 -13.14945 -13.12728 -12.89369 -12.85476 -12.55012 -12.19439 -12.02035 -11.97461 -11.92213 -11.55829 -11.42435 -11.19952 -11.06313 -10.87661 -10.85070 -10.64122 -10.39129 -10.23526 -10.19021 -10.05898 -9.83889 -9.60482 -9.50658 -9.21647 -8.94944 -8.80217 -8.30923 -6.90257 -5.73193 -3.01213 1.47857 1.88323 2.21942 3.20514 3.44798 3.45569 3.49505 3.50399 3.56916 3.96148 4.17003 4.42671 4.52957 4.54708 4.61180 4.67162 4.75536 5.03327 5.10662 5.16429 5.22940 5.26703 5.36257 5.43565 5.47899 5.54321 5.55221 5.65250 5.67183 5.70423 5.72081 5.79290 5.80881 5.91230 5.96764 6.12813 6.21317 6.24097 6.33826 6.44602 6.46855 6.49288 6.56237 6.60353 6.74103 6.83584 6.94388 7.05601 7.16939 7.59726 7.72261 7.81889 8.35459 8.45350 9.56419 10.15097 10.50329 11.49356 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013319 B = 0.002687 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.738303 B =10418.461412 C =11909.485615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 C -0.104 4.104 4 H 0.070 0.930 5 C 0.119 3.881 6 N -0.592 5.592 7 C 0.600 3.400 8 O -0.543 6.543 9 C -0.003 4.003 10 C -0.178 4.178 11 C 0.046 3.954 12 C -0.098 4.098 13 C -0.162 4.162 14 C -0.162 4.162 15 N -0.284 5.284 16 C 0.084 3.916 17 N -0.254 5.254 18 C 0.089 3.911 19 C -0.149 4.149 20 C 0.183 3.817 21 H 0.047 0.953 22 N -0.720 5.720 23 C -0.235 4.235 24 H 0.069 0.931 25 C -0.014 4.014 26 N -0.933 5.933 27 Si 0.905 3.095 28 H -0.287 1.287 29 H -0.292 1.292 30 H -0.287 1.287 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.083 0.917 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.091 0.909 38 H 0.159 0.841 39 H 0.115 0.885 40 H 0.102 0.898 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.084 0.916 45 H 0.099 0.901 46 H 0.093 0.907 47 H 0.061 0.939 48 H 0.117 0.883 49 H 0.056 0.944 50 H 0.073 0.927 51 H 0.384 0.616 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.756 21.477 14.398 26.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.124 4.124 4 H 0.088 0.912 5 C -0.003 4.003 6 N -0.323 5.323 7 C 0.387 3.613 8 O -0.420 6.420 9 C -0.163 4.163 10 C -0.206 4.206 11 C -0.079 4.079 12 C -0.118 4.118 13 C -0.199 4.199 14 C -0.200 4.200 15 N -0.071 5.071 16 C -0.056 4.056 17 N -0.089 5.089 18 C -0.035 4.035 19 C -0.190 4.190 20 C 0.073 3.927 21 H 0.065 0.935 22 N -0.361 5.361 23 C -0.366 4.366 24 H 0.087 0.913 25 C -0.210 4.210 26 N -0.581 5.581 27 Si 0.736 3.264 28 H -0.214 1.214 29 H -0.218 1.218 30 H -0.214 1.214 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.109 0.891 38 H 0.176 0.824 39 H 0.133 0.867 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.103 0.897 45 H 0.118 0.882 46 H 0.112 0.888 47 H 0.079 0.921 48 H 0.134 0.866 49 H 0.075 0.925 50 H 0.092 0.908 51 H 0.218 0.782 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.038 20.828 14.455 25.672 hybrid contribution 0.375 -0.066 -0.478 0.611 sum -3.663 20.762 13.977 25.295 Atomic orbital electron populations 1.21844 0.96824 1.00955 1.01356 1.21449 0.94362 0.95728 1.03414 1.21772 0.97667 0.96179 0.96750 0.91184 1.21795 0.99400 0.81212 0.97895 1.47982 1.09077 1.06170 1.69066 1.16973 0.85789 0.81816 0.76766 1.90750 1.13153 1.85216 1.52835 1.21895 0.89553 0.95410 1.09394 1.21351 1.00098 0.90052 1.09090 1.20408 0.85832 0.94009 1.07609 1.20278 0.95117 0.88400 1.07999 1.23109 0.98498 1.03227 0.95088 1.23121 1.00251 1.01961 0.94644 1.45447 1.07229 1.03838 1.50548 1.22172 0.80417 0.98947 1.04095 1.73554 1.18535 0.97305 1.19464 1.22505 0.78528 1.04267 0.98200 1.22650 1.01865 0.98955 0.95506 1.20212 0.90765 0.90689 0.91062 0.93511 1.42409 1.16484 1.64442 1.12746 1.19176 0.91867 1.27079 0.98518 0.91348 1.24721 0.98094 1.01691 0.96475 1.69655 1.35325 1.48452 1.04705 0.86307 0.84260 0.79170 0.76674 1.21352 1.21799 1.21414 0.93230 0.93185 0.92976 0.89826 0.92490 0.91578 0.89089 0.82356 0.86681 0.87922 0.88025 0.87994 0.87883 0.89712 0.88195 0.88832 0.92074 0.86594 0.92538 0.90840 0.78239 0.93543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.67 37.16 0.36 -1.87 16 2 C -0.11 -1.89 5.31 -26.73 -0.14 -2.04 16 3 C -0.10 -1.82 1.93 -90.50 -0.17 -2.00 16 4 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 5 C 0.12 1.91 5.33 -3.71 -0.02 1.89 16 6 N -0.59 -9.70 2.97 -173.93 -0.52 -10.22 16 7 C 0.60 10.28 7.69 -12.39 -0.10 10.19 16 8 O -0.54 -10.43 16.36 5.31 0.09 -10.34 16 9 C 0.00 -0.05 6.82 -82.76 -0.56 -0.61 16 10 C -0.18 -2.25 9.86 -39.36 -0.39 -2.64 16 11 C 0.05 0.46 6.60 -82.21 -0.54 -0.08 16 12 C -0.10 -0.65 5.93 -91.77 -0.54 -1.20 16 13 C -0.16 -0.93 10.05 -26.69 -0.27 -1.19 16 14 C -0.16 -0.96 10.06 -26.69 -0.27 -1.23 16 15 N -0.28 -2.97 3.70 -63.85 -0.24 -3.20 16 16 C 0.08 0.48 11.05 59.85 0.66 1.14 16 17 N -0.25 -3.42 8.47 33.42 0.28 -3.14 16 18 C 0.09 1.39 6.10 -3.71 -0.02 1.37 16 19 C -0.15 -2.74 5.66 -26.61 -0.15 -2.89 16 20 C 0.18 3.65 2.19 -67.89 -0.15 3.50 16 21 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 22 N -0.72 -17.76 4.33 -53.38 -0.23 -18.00 16 23 C -0.24 -6.41 9.93 -15.06 -0.15 -6.56 16 24 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 25 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 26 N -0.93 -28.08 13.06 55.49 0.72 -27.36 16 27 Si 0.90 22.35 29.55 -169.99 -5.02 17.32 16 28 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 29 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 30 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.68 6.70 -51.93 -0.35 0.33 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 1.68 7.22 -51.93 -0.38 1.30 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.09 1.48 5.72 -51.93 -0.30 1.18 16 38 H 0.16 1.85 8.06 -52.49 -0.42 1.43 16 39 H 0.12 0.53 7.18 -51.92 -0.37 0.15 16 40 H 0.10 0.67 7.94 -51.93 -0.41 0.26 16 41 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.10 0.71 7.97 -51.93 -0.41 0.29 16 44 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.09 0.30 7.13 -51.93 -0.37 -0.07 16 47 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 48 H 0.12 1.77 4.20 -67.29 -0.28 1.49 16 49 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 50 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 51 H 0.38 10.21 7.51 -40.82 -0.31 9.90 16 52 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 410.99 15.07 6.19 6.19 Total: -1.00 -33.45 410.99 -9.91 -43.37 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -8.64 Total: 10.09 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -2.55 Total: -4.72 kcal Atomic # 7 Polarization: -61.94 SS G_CDS: 0.02 Total: -61.92 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.09 Total: -10.34 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.45 -9.91 -43.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037867356.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.862 kcal (2) G-P(sol) polarization free energy of solvation -33.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds