Wall clock time and date at job start Wed Apr 1 2020 05:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47173 * 2 1 4 4 H 1.08998 * 109.52805 * 55.07416 * 3 2 1 5 5 C 1.53194 * 109.49994 * 294.99655 * 3 2 1 6 6 N 1.46922 * 108.89686 * 185.48566 * 5 3 2 7 7 C 1.34780 * 120.62973 * 233.51361 * 6 5 3 8 8 O 1.21570 * 119.99929 * 354.00921 * 7 6 5 9 9 C 1.47710 * 119.99587 * 174.00574 * 7 6 5 10 10 C 1.41501 * 126.51646 * 173.24567 * 9 7 6 11 11 C 1.35362 * 105.50372 * 179.90519 * 10 9 7 12 12 C 1.50696 * 126.38471 * 180.09052 * 11 10 9 13 13 C 1.53006 * 117.50161 * 33.93766 * 12 11 10 14 14 C 1.52999 * 60.00195 * 252.50948 * 13 12 11 15 15 N 1.35036 * 107.22960 * 0.35461 * 11 10 9 16 16 C 1.46496 * 124.88460 * 179.76441 * 15 11 10 17 17 N 1.28468 * 110.22630 * 359.76707 * 15 11 10 18 18 C 1.46921 * 118.73624 * 53.53697 * 6 5 3 19 19 C 1.53194 * 108.77924 * 306.39268 * 18 6 5 20 20 C 1.53035 * 109.31024 * 54.63384 * 19 18 6 21 21 H 1.08998 * 109.46366 * 58.64457 * 20 19 18 22 22 N 1.46501 * 109.45923 * 178.61877 * 20 19 18 23 23 C 1.36941 * 119.99907 * 275.00619 * 22 20 19 24 24 H 1.07999 * 120.00013 * 359.97438 * 23 22 20 25 25 C 1.38810 * 119.99916 * 179.97438 * 23 22 20 26 26 N 1.31619 * 120.00347 * 359.97438 * 25 23 22 27 27 Si 1.86795 * 120.00085 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.47349 * 59.99665 * 27 25 23 29 29 H 1.48498 * 109.47357 * 179.97438 * 27 25 23 30 30 H 1.48503 * 109.47042 * 299.99823 * 27 25 23 31 31 H 1.09000 * 109.47335 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47167 * 300.00551 * 1 2 3 33 33 H 1.09000 * 109.47126 * 60.00093 * 1 2 3 34 34 H 1.08999 * 109.47167 * 239.99449 * 2 1 3 35 35 H 1.09005 * 109.46299 * 119.99636 * 2 1 3 36 36 H 1.09003 * 109.58281 * 65.62256 * 5 3 2 37 37 H 1.09008 * 109.58358 * 305.34863 * 5 3 2 38 38 H 1.08008 * 127.24410 * 0.02562 * 10 9 7 39 39 H 1.09007 * 115.55321 * 179.64744 * 12 11 10 40 40 H 1.09001 * 117.49676 * 0.02562 * 13 12 11 41 41 H 1.09002 * 117.49787 * 145.01999 * 13 12 11 42 42 H 1.08998 * 117.50148 * 252.51206 * 14 13 12 43 43 H 1.09002 * 117.49747 * 107.48306 * 14 13 12 44 44 H 1.08996 * 109.47052 * 269.97939 * 16 15 11 45 45 H 1.08999 * 109.47167 * 29.98061 * 16 15 11 46 46 H 1.08996 * 109.47033 * 149.98096 * 16 15 11 47 47 H 1.09000 * 109.59053 * 66.18267 * 18 6 5 48 48 H 1.08996 * 109.58588 * 186.60140 * 18 6 5 49 49 H 1.08991 * 109.49776 * 174.59167 * 19 18 6 50 50 H 1.09004 * 109.49073 * 294.65273 * 19 18 6 51 51 H 0.96997 * 120.00298 * 94.99501 * 22 20 19 52 52 H 0.97001 * 120.00651 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6070 1.9820 0.8423 5 6 1.6352 2.1280 -1.3088 6 7 2.2418 3.4654 -1.3529 7 6 1.4819 4.5572 -1.5700 8 8 0.3029 4.4335 -1.8395 9 6 2.0817 5.9041 -1.4803 10 6 1.4541 7.1289 -1.8090 11 6 2.3803 8.0862 -1.5682 12 6 2.2026 9.5703 -1.7596 13 6 0.8150 10.1563 -1.4909 14 6 1.3280 10.0324 -2.9270 15 7 3.4952 7.4628 -1.1300 16 6 4.7417 8.1375 -0.7598 17 7 3.3053 6.1931 -1.0845 18 6 3.6924 3.5899 -1.1563 19 6 4.0745 2.8913 0.1524 20 6 3.5658 1.4482 0.1230 21 1 3.9987 0.9279 -0.7313 22 7 3.9581 0.7672 1.3593 23 6 5.1960 0.1903 1.4600 24 1 5.8829 0.2371 0.6279 25 6 5.5679 -0.4546 2.6316 26 7 4.7310 -0.5112 3.6459 27 14 7.2562 -1.2421 2.7688 28 1 8.3027 -0.2052 2.5823 29 1 7.4064 -1.8605 4.1105 30 1 7.4018 -2.2862 1.7229 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.8932 -0.5138 0.8901 36 1 0.5497 2.2173 -1.3539 37 1 1.9887 1.5383 -2.1547 38 1 0.4472 7.2703 -2.1733 39 1 3.0665 10.1841 -1.5043 40 1 0.0307 9.4683 -1.1752 41 1 0.7658 11.1556 -1.0585 42 1 1.6164 10.9503 -3.4393 43 1 0.8812 9.2628 -3.5564 44 1 5.3844 8.2198 -1.6364 45 1 4.5166 9.1338 -0.3795 46 1 5.2518 7.5607 0.0117 47 1 4.2157 3.1187 -1.9883 48 1 3.9645 4.6439 -1.1009 49 1 5.1589 2.8927 0.2624 50 1 3.6230 3.4197 0.9921 51 1 3.3411 0.7249 2.1066 52 1 4.9910 -0.9615 4.4648 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037867360.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:57:12 Heat of formation + Delta-G solvation = 89.150613 kcal Electronic energy + Delta-G solvation = -31250.693778 eV Core-core repulsion = 27253.431521 eV Total energy + Delta-G solvation = -3997.262257 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 3.53 seconds Orbital eigenvalues (eV) -42.91146 -39.78122 -37.65965 -37.56335 -34.65688 -33.84608 -33.47166 -31.62637 -30.68007 -29.35882 -28.89621 -27.48651 -25.19284 -24.07587 -23.51552 -23.14979 -22.79495 -21.94564 -20.72106 -20.38694 -19.66698 -18.85696 -17.40658 -17.02953 -16.69387 -16.42934 -15.70949 -15.39741 -14.96047 -14.80000 -14.58480 -14.19258 -13.96368 -13.78599 -13.57146 -13.34499 -13.19016 -13.07134 -12.88972 -12.82406 -12.50572 -12.18446 -12.02051 -11.98381 -11.95592 -11.55342 -11.42254 -11.20239 -11.05765 -10.88750 -10.84622 -10.64885 -10.35309 -10.19592 -10.17731 -10.05195 -9.81393 -9.56752 -9.50289 -9.21656 -8.95711 -8.79782 -8.30277 -6.89811 -5.72968 -3.00918 1.48309 1.88300 2.22162 3.22418 3.44824 3.45716 3.49560 3.50380 3.56937 3.96669 4.17941 4.42912 4.53690 4.54866 4.61436 4.68150 4.78283 5.06537 5.11324 5.16447 5.22711 5.27399 5.35952 5.44108 5.47312 5.54420 5.56056 5.66564 5.67473 5.70218 5.71407 5.79925 5.81054 5.91283 5.96846 6.11915 6.21099 6.24280 6.34602 6.45126 6.48040 6.49641 6.57809 6.62283 6.76108 6.86691 6.95406 7.06556 7.18672 7.60304 7.72514 7.85015 8.35722 8.45549 9.56619 10.15442 10.50657 11.49598 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013258 B = 0.002751 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.352776 B =10175.147687 C =11788.715141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.104 4.104 4 H 0.069 0.931 5 C 0.120 3.880 6 N -0.591 5.591 7 C 0.600 3.400 8 O -0.544 6.544 9 C -0.002 4.002 10 C -0.179 4.179 11 C 0.046 3.954 12 C -0.098 4.098 13 C -0.162 4.162 14 C -0.162 4.162 15 N -0.283 5.283 16 C 0.083 3.917 17 N -0.252 5.252 18 C 0.075 3.925 19 C -0.143 4.143 20 C 0.182 3.818 21 H 0.046 0.954 22 N -0.721 5.721 23 C -0.234 4.234 24 H 0.068 0.932 25 C -0.014 4.014 26 N -0.933 5.933 27 Si 0.904 3.096 28 H -0.287 1.287 29 H -0.292 1.292 30 H -0.287 1.287 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.057 0.943 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.065 0.935 38 H 0.159 0.841 39 H 0.115 0.885 40 H 0.103 0.897 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.102 0.898 44 H 0.085 0.915 45 H 0.093 0.907 46 H 0.100 0.900 47 H 0.057 0.943 48 H 0.129 0.871 49 H 0.072 0.928 50 H 0.056 0.944 51 H 0.384 0.616 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.986 21.745 -12.777 25.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.124 4.124 4 H 0.087 0.913 5 C -0.003 4.003 6 N -0.322 5.322 7 C 0.387 3.613 8 O -0.420 6.420 9 C -0.162 4.162 10 C -0.206 4.206 11 C -0.078 4.078 12 C -0.118 4.118 13 C -0.200 4.200 14 C -0.199 4.199 15 N -0.069 5.069 16 C -0.057 4.057 17 N -0.087 5.087 18 C -0.049 4.049 19 C -0.184 4.184 20 C 0.072 3.928 21 H 0.064 0.936 22 N -0.361 5.361 23 C -0.366 4.366 24 H 0.086 0.914 25 C -0.210 4.210 26 N -0.582 5.582 27 Si 0.736 3.264 28 H -0.214 1.214 29 H -0.218 1.218 30 H -0.214 1.214 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.102 0.898 36 H 0.108 0.892 37 H 0.084 0.916 38 H 0.176 0.824 39 H 0.133 0.867 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.104 0.896 45 H 0.112 0.888 46 H 0.119 0.881 47 H 0.076 0.924 48 H 0.146 0.854 49 H 0.090 0.910 50 H 0.075 0.925 51 H 0.217 0.783 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.311 21.137 -12.495 24.930 hybrid contribution 0.398 -0.127 0.284 0.505 sum -3.913 21.010 -12.212 24.614 Atomic orbital electron populations 1.21847 0.96834 1.00987 1.01334 1.21442 0.94348 0.95703 1.03423 1.21774 0.97763 0.96154 0.96670 0.91273 1.21779 0.99287 0.81340 0.97860 1.47978 1.09012 1.06146 1.69071 1.16985 0.85277 0.82050 0.77035 1.90748 1.15530 1.85990 1.49777 1.21906 0.91543 0.95302 1.07414 1.21341 1.01074 0.89750 1.08480 1.20408 0.88076 0.94245 1.05076 1.20281 0.96491 0.88774 1.06254 1.23106 0.95468 1.02446 0.98934 1.23097 1.02289 1.03272 0.91275 1.45503 1.11665 1.03730 1.46044 1.22189 0.82644 0.97890 1.03022 1.73345 1.18645 0.95845 1.20842 1.22761 0.78467 1.05412 0.98234 1.22562 1.01753 0.98627 0.95478 1.20229 0.90729 0.90852 0.91002 0.93590 1.42405 1.16482 1.64593 1.12604 1.19175 0.91879 1.27125 0.98394 0.91359 1.24711 0.98089 1.01719 0.96463 1.69649 1.35328 1.48632 1.04566 0.86310 0.84272 0.79183 0.76664 1.21424 1.21808 1.21355 0.93203 0.93003 0.93171 0.92468 0.89820 0.89201 0.91630 0.82356 0.86658 0.87881 0.87999 0.88029 0.87948 0.89629 0.88841 0.88115 0.92418 0.85402 0.90964 0.92478 0.78261 0.93553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.67 37.16 0.36 -1.87 16 2 C -0.11 -1.89 5.32 -26.73 -0.14 -2.03 16 3 C -0.10 -1.82 1.93 -90.48 -0.17 -2.00 16 4 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 5 C 0.12 1.93 5.30 -3.71 -0.02 1.91 16 6 N -0.59 -9.73 2.97 -173.93 -0.52 -10.25 16 7 C 0.60 10.30 7.69 -12.39 -0.10 10.20 16 8 O -0.54 -10.41 16.37 5.30 0.09 -10.32 16 9 C 0.00 -0.03 6.87 -82.77 -0.57 -0.60 16 10 C -0.18 -2.25 9.86 -39.37 -0.39 -2.64 16 11 C 0.05 0.47 6.60 -82.21 -0.54 -0.07 16 12 C -0.10 -0.66 5.94 -91.77 -0.55 -1.20 16 13 C -0.16 -0.95 10.05 -26.73 -0.27 -1.22 16 14 C -0.16 -0.92 10.05 -26.73 -0.27 -1.18 16 15 N -0.28 -3.02 3.70 -63.86 -0.24 -3.25 16 16 C 0.08 0.50 11.05 59.84 0.66 1.16 16 17 N -0.25 -3.48 8.37 33.42 0.28 -3.20 16 18 C 0.07 1.18 6.33 -3.71 -0.02 1.16 16 19 C -0.14 -2.64 5.66 -26.61 -0.15 -2.79 16 20 C 0.18 3.64 2.19 -67.87 -0.15 3.49 16 21 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 22 N -0.72 -17.76 4.34 -53.37 -0.23 -18.00 16 23 C -0.23 -6.40 9.93 -15.06 -0.15 -6.55 16 24 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 25 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 26 N -0.93 -28.08 13.06 55.49 0.72 -27.35 16 27 Si 0.90 22.34 29.55 -169.99 -5.02 17.32 16 28 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 29 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 30 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.68 6.70 -51.93 -0.35 0.33 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.08 1.68 7.24 -51.93 -0.38 1.30 16 36 H 0.09 1.47 5.76 -51.93 -0.30 1.17 16 37 H 0.07 0.99 8.14 -51.92 -0.42 0.56 16 38 H 0.16 1.83 8.06 -52.48 -0.42 1.41 16 39 H 0.12 0.53 7.16 -51.93 -0.37 0.16 16 40 H 0.10 0.70 7.95 -51.93 -0.41 0.29 16 41 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.10 0.66 7.96 -51.93 -0.41 0.24 16 44 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.09 0.33 7.12 -51.93 -0.37 -0.04 16 46 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.13 1.95 3.75 -109.11 -0.41 1.54 16 49 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 50 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 51 H 0.38 10.20 7.53 -40.82 -0.31 9.89 16 52 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 410.79 15.07 6.19 6.19 Total: -1.00 -33.42 410.79 -10.06 -43.48 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -8.77 Total: 10.11 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -2.56 Total: -4.73 kcal Atomic # 7 Polarization: -62.07 SS G_CDS: 0.02 Total: -62.05 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.42 -10.06 -43.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037867360.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.632 kcal (2) G-P(sol) polarization free energy of solvation -33.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.54 seconds