Wall clock time and date at job start Wed Apr 1 2020 06:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52990 * 109.47138 * 2 1 4 4 H 1.09002 * 109.52818 * 305.08044 * 3 2 1 5 5 C 1.53626 * 109.43439 * 65.28885 * 3 2 1 6 6 N 1.46923 * 108.54813 * 174.72409 * 5 3 2 7 7 C 1.34774 * 120.63260 * 126.36295 * 6 5 3 8 8 O 1.21280 * 120.00159 * 359.72509 * 7 6 5 9 9 C 1.50699 * 119.99947 * 179.71849 * 7 6 5 10 10 N 1.46504 * 109.46990 * 180.02562 * 9 7 6 11 11 C 1.34951 * 126.03463 * 125.02933 * 10 9 7 12 12 C 1.35320 * 107.74569 * 180.02562 * 11 10 9 13 13 C 1.50697 * 126.04023 * 180.02562 * 12 11 10 14 14 C 1.52998 * 117.50085 * 188.61835 * 13 12 11 15 15 C 1.52998 * 117.49844 * 119.99229 * 13 12 11 16 16 C 1.39866 * 107.91898 * 359.97438 * 12 11 10 17 17 N 1.30844 * 108.20609 * 0.02562 * 16 12 11 18 18 C 1.46933 * 118.73593 * 306.09312 * 6 5 3 19 19 C 1.53195 * 108.77421 * 53.85923 * 18 6 5 20 20 C 1.53036 * 109.31110 * 305.36480 * 19 18 6 21 21 H 1.08997 * 109.46036 * 301.34465 * 20 19 18 22 22 N 1.46509 * 109.45660 * 181.38822 * 20 19 18 23 23 C 1.36930 * 119.99907 * 85.00195 * 22 20 19 24 24 H 1.08001 * 120.00371 * 359.97438 * 23 22 20 25 25 C 1.38818 * 119.99876 * 179.97438 * 23 22 20 26 26 N 1.31613 * 119.99887 * 179.97438 * 25 23 22 27 27 Si 1.86796 * 120.00023 * 0.02562 * 25 23 22 28 28 H 1.48502 * 109.47393 * 89.99766 * 27 25 23 29 29 H 1.48498 * 109.47334 * 209.99881 * 27 25 23 30 30 H 1.48500 * 109.46930 * 329.99833 * 27 25 23 31 31 H 1.08999 * 109.47324 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47303 * 300.00186 * 1 2 3 33 33 H 1.09003 * 109.46634 * 59.99806 * 1 2 3 34 34 H 1.09000 * 109.47303 * 239.99814 * 2 1 3 35 35 H 1.09003 * 109.46634 * 120.00194 * 2 1 3 36 36 H 1.08996 * 109.74037 * 54.98381 * 5 3 2 37 37 H 1.09001 * 109.65901 * 294.41555 * 5 3 2 38 38 H 1.09001 * 109.46775 * 60.00690 * 9 7 6 39 39 H 1.08995 * 109.47564 * 300.00261 * 9 7 6 40 40 H 1.08004 * 126.12633 * 0.04038 * 11 10 9 41 41 H 1.09004 * 115.54637 * 334.32679 * 13 12 11 42 42 H 1.09006 * 117.49722 * 0.02562 * 14 13 12 43 43 H 1.08999 * 117.49646 * 145.01445 * 14 13 12 44 44 H 1.09000 * 117.50303 * 214.97657 * 15 13 12 45 45 H 1.08997 * 117.49829 * 0.02562 * 15 13 12 46 46 H 1.08004 * 125.89969 * 180.02562 * 16 12 11 47 47 H 1.08999 * 109.58185 * 173.64506 * 18 6 5 48 48 H 1.08997 * 109.58548 * 293.92696 * 18 6 5 49 49 H 1.08994 * 109.49525 * 65.31651 * 19 18 6 50 50 H 1.08998 * 109.49546 * 185.41262 * 19 18 6 51 51 H 0.96995 * 119.99539 * 264.99639 * 22 20 19 52 52 H 0.97000 * 120.00086 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6048 1.9827 -0.8407 5 6 1.6394 2.1262 1.3161 6 7 2.2451 3.4643 1.3508 7 6 1.4858 4.5564 1.5681 8 8 0.2898 4.4405 1.7324 9 6 2.1230 5.9215 1.6071 10 7 1.0938 6.9338 1.8569 11 6 1.1021 7.8456 2.8518 12 6 -0.0210 8.5916 2.7368 13 6 -0.4252 9.7303 3.6374 14 6 -1.8290 10.3108 3.4557 15 6 -0.6063 11.1078 2.9967 16 6 -0.7399 8.1200 1.6336 17 7 -0.0727 7.1260 1.1055 18 6 3.6953 3.5887 1.1499 19 6 4.0738 2.8880 -0.1588 20 6 3.5653 1.4450 -0.1256 21 1 4.0008 0.9260 0.7282 22 7 3.9543 0.7620 -1.3620 23 6 5.1918 0.1850 -1.4651 24 1 5.8813 0.2337 -0.6353 25 6 5.5602 -0.4626 -2.6364 26 7 6.7499 -1.0168 -2.7358 27 14 4.3680 -0.5464 -4.0720 28 1 4.5705 0.6317 -4.9531 29 1 4.6112 -1.7905 -4.8455 30 1 2.9745 -0.5470 -3.5588 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 2.0008 1.5396 2.1606 37 1 0.5542 2.2149 1.3677 38 1 2.6076 6.1236 0.6519 39 1 2.8649 5.9536 2.4049 40 1 1.8680 7.9596 3.6047 41 1 -0.0219 9.6950 4.6495 42 1 -2.4605 9.8688 2.6849 43 1 -2.3497 10.6574 4.3484 44 1 -0.3226 11.9789 3.5874 45 1 -0.4335 11.1904 1.9237 46 1 -1.6829 8.5090 1.2789 47 1 3.9670 4.6427 1.0920 48 1 4.2209 3.1211 1.9825 49 1 3.6194 3.4147 -0.9979 50 1 5.1579 2.8893 -0.2718 51 1 3.3352 0.7184 -2.1074 52 1 7.0072 -1.4696 -3.5540 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037867577.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:02:25 Heat of formation + Delta-G solvation = 84.530063 kcal Electronic energy + Delta-G solvation = -30580.308313 eV Core-core repulsion = 26582.845694 eV Total energy + Delta-G solvation = -3997.462619 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.52145 -40.19250 -38.01613 -37.22316 -34.96536 -34.00989 -33.24297 -31.84806 -30.35018 -29.98571 -29.34097 -27.55844 -25.02798 -24.03791 -23.13723 -22.71172 -22.54619 -21.43150 -20.90601 -20.33326 -19.83497 -18.99673 -17.74272 -17.41567 -17.03169 -16.05151 -15.85726 -15.62657 -15.01237 -14.71160 -14.50618 -14.41934 -14.27671 -13.89084 -13.77572 -13.48768 -13.30379 -13.22450 -12.94163 -12.75437 -12.57810 -12.40251 -12.19540 -12.05429 -11.89176 -11.79019 -11.46713 -11.12368 -11.09360 -11.07153 -10.85716 -10.73565 -10.52096 -10.46363 -10.37546 -10.25475 -10.09548 -9.81359 -9.63279 -9.44491 -8.98804 -8.64515 -8.39390 -7.33601 -5.83425 -3.19065 1.67847 2.17066 2.44005 2.57338 2.94238 3.32959 3.36552 3.41878 3.75221 4.09036 4.29399 4.50030 4.53513 4.61088 4.66314 4.73343 4.80005 4.84514 4.95839 4.98825 5.05493 5.11773 5.13614 5.26845 5.37225 5.39955 5.44851 5.47074 5.52846 5.52970 5.61126 5.73846 5.81081 5.84763 5.85877 5.94983 5.96954 5.99749 6.02425 6.18256 6.21106 6.29033 6.36233 6.46723 6.48680 6.65139 6.72160 6.76605 6.87601 7.29592 7.57356 7.91612 8.03452 8.35620 9.13678 9.86624 10.06374 11.34684 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019657 B = 0.002143 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.099174 B =13061.005244 C =13544.958895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.108 4.108 4 H 0.069 0.931 5 C 0.122 3.878 6 N -0.606 5.606 7 C 0.501 3.499 8 O -0.518 6.518 9 C 0.117 3.883 10 N -0.360 5.360 11 C 0.058 3.942 12 C -0.206 4.206 13 C -0.072 4.072 14 C -0.177 4.177 15 C -0.177 4.177 16 C 0.045 3.955 17 N -0.260 5.260 18 C 0.105 3.895 19 C -0.153 4.153 20 C 0.188 3.812 21 H 0.057 0.943 22 N -0.745 5.745 23 C -0.243 4.243 24 H 0.090 0.910 25 C 0.006 3.994 26 N -0.932 5.932 27 Si 0.882 3.118 28 H -0.285 1.285 29 H -0.291 1.291 30 H -0.277 1.277 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.115 0.885 39 H 0.124 0.876 40 H 0.173 0.827 41 H 0.108 0.892 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.178 0.822 47 H 0.075 0.925 48 H 0.074 0.926 49 H 0.060 0.940 50 H 0.083 0.917 51 H 0.361 0.639 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.834 19.660 14.226 26.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.128 4.128 4 H 0.088 0.912 5 C 0.000 4.000 6 N -0.340 5.340 7 C 0.287 3.713 8 O -0.392 6.392 9 C -0.009 4.009 10 N -0.142 5.142 11 C -0.087 4.087 12 C -0.218 4.218 13 C -0.091 4.091 14 C -0.214 4.214 15 C -0.214 4.214 16 C -0.143 4.143 17 N -0.080 5.080 18 C -0.019 4.019 19 C -0.194 4.194 20 C 0.079 3.921 21 H 0.075 0.925 22 N -0.386 5.386 23 C -0.373 4.373 24 H 0.108 0.892 25 C -0.190 4.190 26 N -0.580 5.580 27 Si 0.712 3.288 28 H -0.212 1.212 29 H -0.218 1.218 30 H -0.203 1.203 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.133 0.867 39 H 0.142 0.858 40 H 0.190 0.810 41 H 0.126 0.874 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.195 0.805 47 H 0.093 0.907 48 H 0.092 0.908 49 H 0.078 0.922 50 H 0.101 0.899 51 H 0.194 0.806 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.078 18.478 13.384 25.816 hybrid contribution -0.518 0.440 -0.568 0.885 sum -12.596 18.918 12.817 26.093 Atomic orbital electron populations 1.21853 0.96613 1.01188 1.01459 1.21464 0.94570 0.95651 1.03446 1.21913 0.97582 0.96334 0.96977 0.91208 1.21823 0.99541 0.81031 0.97624 1.48166 1.08576 1.06604 1.70678 1.20399 0.87438 0.85737 0.77767 1.90765 1.14234 1.85783 1.48463 1.21567 0.88205 0.85513 1.05588 1.47976 1.17683 1.25611 1.22913 1.22172 1.00058 0.92258 0.94181 1.19230 0.97506 1.03306 1.01731 1.20151 0.99783 0.91211 0.97961 1.22959 0.90861 1.04109 1.03457 1.23019 1.02601 0.94441 1.01368 1.23727 1.00208 0.94809 0.95537 1.77543 0.94480 1.17822 1.18166 1.21929 0.79251 1.00995 0.99689 1.22658 1.02770 0.98913 0.95040 1.20153 0.90680 0.90596 0.90717 0.92466 1.42773 1.16539 1.66242 1.13074 1.19033 0.90417 1.27428 1.00439 0.89191 1.24657 0.96412 1.00201 0.97697 1.69690 1.19300 1.41440 1.27562 0.86601 0.81148 0.77356 0.83692 1.21168 1.21769 1.20277 0.93017 0.92979 0.93075 0.90390 0.91935 0.91320 0.89063 0.86676 0.85811 0.81003 0.87442 0.88697 0.88732 0.88852 0.88801 0.80505 0.90704 0.90801 0.92154 0.89859 0.80580 0.93041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.68 37.16 0.36 -1.65 16 2 C -0.11 -1.70 5.31 -26.73 -0.14 -1.84 16 3 C -0.11 -1.62 1.94 -90.28 -0.17 -1.80 16 4 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 5 C 0.12 1.63 5.35 -3.49 -0.02 1.61 16 6 N -0.61 -7.48 2.97 -172.50 -0.51 -7.99 16 7 C 0.50 6.66 7.73 -10.99 -0.08 6.57 16 8 O -0.52 -9.05 15.12 5.56 0.08 -8.96 16 9 C 0.12 1.12 5.34 -5.19 -0.03 1.09 16 10 N -0.36 -4.26 3.40 -62.54 -0.21 -4.47 16 11 C 0.06 0.56 11.36 -17.22 -0.20 0.36 16 12 C -0.21 -2.06 5.76 -105.05 -0.61 -2.67 16 13 C -0.07 -0.55 6.25 -91.77 -0.57 -1.12 16 14 C -0.18 -1.18 10.02 -26.73 -0.27 -1.45 16 15 C -0.18 -1.17 10.23 -26.73 -0.27 -1.44 16 16 C 0.04 0.52 11.35 -17.36 -0.20 0.32 16 17 N -0.26 -3.75 11.64 30.63 0.36 -3.40 16 18 C 0.10 1.11 6.34 -3.71 -0.02 1.08 16 19 C -0.15 -2.23 5.66 -26.61 -0.15 -2.38 16 20 C 0.19 3.22 2.19 -67.89 -0.15 3.07 16 21 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 22 N -0.74 -16.22 4.13 -53.38 -0.22 -16.44 16 23 C -0.24 -6.41 10.41 -15.06 -0.16 -6.57 16 24 H 0.09 2.54 8.06 -52.49 -0.42 2.11 16 25 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 26 N -0.93 -28.35 13.97 55.49 0.78 -27.57 16 27 Si 0.88 21.58 27.74 -169.99 -4.71 16.86 16 28 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 29 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 30 H -0.28 -6.38 6.52 56.52 0.37 -6.01 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.64 6.70 -51.93 -0.35 0.29 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 1.37 7.22 -51.93 -0.37 1.00 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.09 1.32 5.73 -51.93 -0.30 1.03 16 38 H 0.12 0.97 7.69 -51.93 -0.40 0.57 16 39 H 0.12 0.70 7.87 -51.93 -0.41 0.29 16 40 H 0.17 1.00 8.06 -52.48 -0.42 0.57 16 41 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 0.64 6.98 -51.93 -0.36 0.27 16 43 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.18 1.63 7.19 -52.48 -0.38 1.25 16 47 H 0.07 0.57 5.93 -51.93 -0.31 0.26 16 48 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 50 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 51 H 0.36 7.99 5.38 -40.82 -0.22 7.77 16 52 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 411.02 15.07 6.19 6.19 Total: -1.00 -34.65 411.02 -9.63 -44.28 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -8.60 Total: 8.22 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -2.78 Total: -6.72 kcal Atomic # 7 Polarization: -60.06 SS G_CDS: 0.19 Total: -59.87 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.08 Total: -8.96 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.71 Total: 16.86 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.65 -9.63 -44.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037867577.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.810 kcal (2) G-P(sol) polarization free energy of solvation -34.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds