Wall clock time and date at job start Wed Apr 1 2020 06:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52990 * 109.47138 * 2 1 4 4 H 1.09002 * 109.52818 * 305.08044 * 3 2 1 5 5 C 1.53626 * 109.43439 * 65.28885 * 3 2 1 6 6 N 1.46923 * 108.54813 * 174.72409 * 5 3 2 7 7 C 1.34774 * 120.63260 * 126.36295 * 6 5 3 8 8 O 1.21280 * 120.00159 * 359.72509 * 7 6 5 9 9 C 1.50699 * 119.99947 * 179.71849 * 7 6 5 10 10 N 1.46504 * 109.46990 * 180.02562 * 9 7 6 11 11 C 1.34951 * 126.03463 * 125.02933 * 10 9 7 12 12 C 1.35320 * 107.74569 * 180.02562 * 11 10 9 13 13 C 1.50697 * 126.04023 * 180.02562 * 12 11 10 14 14 C 1.52998 * 117.50085 * 188.61835 * 13 12 11 15 15 C 1.52998 * 117.49844 * 119.99229 * 13 12 11 16 16 C 1.39866 * 107.91898 * 359.97438 * 12 11 10 17 17 N 1.30844 * 108.20609 * 0.02562 * 16 12 11 18 18 C 1.46933 * 118.73593 * 306.09312 * 6 5 3 19 19 C 1.53195 * 108.77421 * 53.85923 * 18 6 5 20 20 C 1.53036 * 109.31110 * 305.36480 * 19 18 6 21 21 H 1.08997 * 109.46036 * 301.34465 * 20 19 18 22 22 N 1.46509 * 109.45660 * 181.38822 * 20 19 18 23 23 C 1.36930 * 119.99907 * 85.00195 * 22 20 19 24 24 H 1.08001 * 120.00371 * 359.97438 * 23 22 20 25 25 C 1.38818 * 119.99876 * 179.97438 * 23 22 20 26 26 N 1.31613 * 119.99887 * 179.97438 * 25 23 22 27 27 Si 1.86796 * 120.00023 * 0.02562 * 25 23 22 28 28 H 1.48502 * 109.47393 * 89.99766 * 27 25 23 29 29 H 1.48498 * 109.47334 * 209.99881 * 27 25 23 30 30 H 1.48500 * 109.46930 * 329.99833 * 27 25 23 31 31 H 1.08999 * 109.47324 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47303 * 300.00186 * 1 2 3 33 33 H 1.09003 * 109.46634 * 59.99806 * 1 2 3 34 34 H 1.09000 * 109.47303 * 239.99814 * 2 1 3 35 35 H 1.09003 * 109.46634 * 120.00194 * 2 1 3 36 36 H 1.08996 * 109.74037 * 54.98381 * 5 3 2 37 37 H 1.09001 * 109.65901 * 294.41555 * 5 3 2 38 38 H 1.09001 * 109.46775 * 60.00690 * 9 7 6 39 39 H 1.08995 * 109.47564 * 300.00261 * 9 7 6 40 40 H 1.08004 * 126.12633 * 0.04038 * 11 10 9 41 41 H 1.09004 * 115.54637 * 334.32679 * 13 12 11 42 42 H 1.09006 * 117.49722 * 0.02562 * 14 13 12 43 43 H 1.08999 * 117.49646 * 145.01445 * 14 13 12 44 44 H 1.09000 * 117.50303 * 214.97657 * 15 13 12 45 45 H 1.08997 * 117.49829 * 0.02562 * 15 13 12 46 46 H 1.08004 * 125.89969 * 180.02562 * 16 12 11 47 47 H 1.08999 * 109.58185 * 173.64506 * 18 6 5 48 48 H 1.08997 * 109.58548 * 293.92696 * 18 6 5 49 49 H 1.08994 * 109.49525 * 65.31651 * 19 18 6 50 50 H 1.08998 * 109.49546 * 185.41262 * 19 18 6 51 51 H 0.96995 * 119.99539 * 264.99639 * 22 20 19 52 52 H 0.97000 * 120.00086 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6048 1.9827 -0.8407 5 6 1.6394 2.1262 1.3161 6 7 2.2451 3.4643 1.3508 7 6 1.4858 4.5564 1.5681 8 8 0.2898 4.4405 1.7324 9 6 2.1230 5.9215 1.6071 10 7 1.0938 6.9338 1.8569 11 6 1.1021 7.8456 2.8518 12 6 -0.0210 8.5916 2.7368 13 6 -0.4252 9.7303 3.6374 14 6 -1.8290 10.3108 3.4557 15 6 -0.6063 11.1078 2.9967 16 6 -0.7399 8.1200 1.6336 17 7 -0.0727 7.1260 1.1055 18 6 3.6953 3.5887 1.1499 19 6 4.0738 2.8880 -0.1588 20 6 3.5653 1.4450 -0.1256 21 1 4.0008 0.9260 0.7282 22 7 3.9543 0.7620 -1.3620 23 6 5.1918 0.1850 -1.4651 24 1 5.8813 0.2337 -0.6353 25 6 5.5602 -0.4626 -2.6364 26 7 6.7499 -1.0168 -2.7358 27 14 4.3680 -0.5464 -4.0720 28 1 4.5705 0.6317 -4.9531 29 1 4.6112 -1.7905 -4.8455 30 1 2.9745 -0.5470 -3.5588 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 2.0008 1.5396 2.1606 37 1 0.5542 2.2149 1.3677 38 1 2.6076 6.1236 0.6519 39 1 2.8649 5.9536 2.4049 40 1 1.8680 7.9596 3.6047 41 1 -0.0219 9.6950 4.6495 42 1 -2.4605 9.8688 2.6849 43 1 -2.3497 10.6574 4.3484 44 1 -0.3226 11.9789 3.5874 45 1 -0.4335 11.1904 1.9237 46 1 -1.6829 8.5090 1.2789 47 1 3.9670 4.6427 1.0920 48 1 4.2209 3.1211 1.9825 49 1 3.6194 3.4147 -0.9979 50 1 5.1579 2.8893 -0.2718 51 1 3.3352 0.7184 -2.1074 52 1 7.0072 -1.4696 -3.5540 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037867577.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:02:24 Heat of formation + Delta-G solvation = 63.437421 kcal Electronic energy + Delta-G solvation = -30581.222959 eV Core-core repulsion = 26582.845694 eV Total energy + Delta-G solvation = -3998.377265 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.29840 -41.23880 -39.22534 -37.80482 -36.31821 -35.43399 -34.06770 -33.62019 -31.52375 -31.11498 -30.39481 -28.51868 -26.41435 -25.17953 -24.17949 -23.78243 -23.15367 -22.34170 -22.15377 -21.36471 -20.87403 -19.99713 -19.43895 -18.45256 -17.85099 -16.94842 -16.88994 -16.63460 -16.29388 -16.01173 -15.60219 -15.44531 -15.23966 -14.93853 -14.84978 -14.72521 -14.58486 -14.36055 -14.18599 -13.93653 -13.66418 -13.37894 -13.27144 -13.12007 -12.93494 -12.84474 -12.69330 -12.59816 -12.27135 -12.17804 -12.04197 -11.86821 -11.74449 -11.66456 -11.60045 -11.38008 -11.16621 -11.13765 -11.08100 -10.87897 -10.30705 -9.71927 -9.26829 -9.10313 -8.00342 -5.31466 0.92647 1.37237 1.37422 1.44412 1.44870 1.48948 1.81850 2.01461 2.48157 3.21517 3.26898 3.31940 3.52043 3.62098 3.72367 3.93113 3.94295 3.99374 4.03295 4.11019 4.14487 4.20584 4.28330 4.30271 4.30819 4.36758 4.42814 4.55361 4.57934 4.66021 4.76097 4.76307 4.80328 4.84759 4.89782 4.96736 5.00639 5.09287 5.12811 5.17699 5.21353 5.31163 5.37413 5.41782 5.43027 5.48348 5.60666 5.70034 5.80688 6.07571 6.24028 6.33974 6.78071 7.05861 7.09984 7.87457 8.04982 9.20995 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019657 B = 0.002143 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.099174 B =13061.005244 C =13544.958895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.112 4.112 3 C -0.096 4.096 4 H 0.056 0.944 5 C 0.128 3.872 6 N -0.604 5.604 7 C 0.499 3.501 8 O -0.566 6.566 9 C 0.115 3.885 10 N -0.369 5.369 11 C 0.063 3.937 12 C -0.218 4.218 13 C -0.078 4.078 14 C -0.180 4.180 15 C -0.171 4.171 16 C 0.034 3.966 17 N -0.318 5.318 18 C 0.111 3.889 19 C -0.146 4.146 20 C 0.181 3.819 21 H 0.052 0.948 22 N -0.748 5.748 23 C -0.214 4.214 24 H 0.066 0.934 25 C -0.062 4.062 26 N -0.982 5.982 27 Si 0.943 3.057 28 H -0.284 1.284 29 H -0.300 1.300 30 H -0.257 1.257 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.045 0.955 34 H 0.050 0.950 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.130 0.870 39 H 0.173 0.827 40 H 0.213 0.787 41 H 0.123 0.877 42 H 0.089 0.911 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.084 0.916 46 H 0.186 0.814 47 H 0.116 0.884 48 H 0.093 0.907 49 H 0.052 0.948 50 H 0.070 0.930 51 H 0.360 0.640 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.360 21.895 16.225 29.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.150 4.150 3 C -0.116 4.116 4 H 0.075 0.925 5 C 0.005 3.995 6 N -0.337 5.337 7 C 0.286 3.714 8 O -0.444 6.444 9 C -0.009 4.009 10 N -0.151 5.151 11 C -0.082 4.082 12 C -0.229 4.229 13 C -0.098 4.098 14 C -0.217 4.217 15 C -0.209 4.209 16 C -0.152 4.152 17 N -0.139 5.139 18 C -0.011 4.011 19 C -0.187 4.187 20 C 0.073 3.927 21 H 0.070 0.930 22 N -0.390 5.390 23 C -0.345 4.345 24 H 0.083 0.917 25 C -0.253 4.253 26 N -0.633 5.633 27 Si 0.772 3.228 28 H -0.210 1.210 29 H -0.227 1.227 30 H -0.182 1.182 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.147 0.853 39 H 0.190 0.810 40 H 0.230 0.770 41 H 0.141 0.859 42 H 0.107 0.893 43 H 0.125 0.875 44 H 0.127 0.873 45 H 0.103 0.897 46 H 0.203 0.797 47 H 0.134 0.866 48 H 0.111 0.889 49 H 0.071 0.929 50 H 0.089 0.911 51 H 0.193 0.807 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.636 20.759 15.417 28.780 hybrid contribution -0.366 -0.224 -1.085 1.167 sum -13.002 20.535 14.331 28.216 Atomic orbital electron populations 1.21790 0.95028 1.01969 1.01669 1.21422 0.95968 0.95339 1.02292 1.21762 0.95675 0.96505 0.97682 0.92528 1.21670 0.99120 0.81908 0.96789 1.48216 1.09226 1.06089 1.70180 1.21068 0.86890 0.86993 0.76439 1.90750 1.16426 1.86555 1.50629 1.21867 0.88164 0.82630 1.08279 1.48147 1.17424 1.26359 1.23215 1.22862 1.00562 0.90936 0.93845 1.19566 0.97603 1.04140 1.01583 1.20245 1.00411 0.90826 0.98281 1.23037 0.90781 1.04012 1.03861 1.23036 1.02249 0.94540 1.01040 1.24046 1.00596 0.94418 0.96138 1.77451 0.96444 1.19564 1.20410 1.22024 0.78125 1.03258 0.97710 1.22466 1.01678 0.97134 0.97421 1.20425 0.92213 0.91687 0.88371 0.92975 1.42820 1.14908 1.66556 1.14754 1.19010 0.91228 1.25290 0.98979 0.91655 1.25339 0.98060 1.01301 1.00626 1.69849 1.21549 1.43761 1.28190 0.85591 0.80116 0.76677 0.80447 1.21042 1.22735 1.18204 0.91977 0.92032 0.93580 0.93171 0.91381 0.89866 0.90108 0.85270 0.81021 0.77000 0.85906 0.89299 0.87482 0.87329 0.89728 0.79687 0.86583 0.88908 0.92921 0.91146 0.80677 0.93612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.68 71.98 0.70 -3.00 16 2 C -0.11 -3.28 5.31 30.59 0.16 -3.11 16 3 C -0.10 -2.79 1.94 -10.57 -0.02 -2.81 16 4 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 5 C 0.13 3.20 5.35 86.51 0.46 3.66 16 6 N -0.60 -13.30 2.97 -818.06 -2.43 -15.73 16 7 C 0.50 12.08 7.73 87.66 0.68 12.76 16 8 O -0.57 -19.32 15.12 -3.03 -0.05 -19.37 16 9 C 0.11 1.79 5.34 85.63 0.46 2.25 16 10 N -0.37 -7.89 3.40 -351.78 -1.20 -9.09 16 11 C 0.06 1.01 11.36 83.54 0.95 1.96 16 12 C -0.22 -3.97 5.76 -20.14 -0.12 -4.09 16 13 C -0.08 -1.02 6.25 -11.54 -0.07 -1.09 16 14 C -0.18 -2.12 10.02 30.60 0.31 -1.82 16 15 C -0.17 -1.93 10.23 30.60 0.31 -1.62 16 16 C 0.03 0.79 11.35 85.23 0.97 1.76 16 17 N -0.32 -9.04 11.64 -57.02 -0.66 -9.71 16 18 C 0.11 1.95 6.34 86.36 0.55 2.49 16 19 C -0.15 -4.00 5.66 30.67 0.17 -3.83 16 20 C 0.18 6.02 2.19 45.02 0.10 6.12 16 21 H 0.05 1.80 8.08 -2.39 -0.02 1.79 16 22 N -0.75 -32.43 4.13 -322.80 -1.33 -33.77 16 23 C -0.21 -11.41 10.41 84.04 0.87 -10.54 16 24 H 0.07 3.77 8.06 -2.91 -0.02 3.75 16 25 C -0.06 -3.53 5.50 84.86 0.47 -3.07 16 26 N -0.98 -61.39 13.97 21.65 0.30 -61.09 16 27 Si 0.94 45.22 27.74 68.60 1.90 47.12 16 28 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 29 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 30 H -0.26 -11.31 6.52 99.48 0.65 -10.67 16 31 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.06 1.43 6.70 -2.39 -0.02 1.41 16 33 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.05 1.75 7.22 -2.39 -0.02 1.73 16 35 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.08 2.26 5.73 -2.39 -0.01 2.24 16 38 H 0.13 1.68 7.69 -2.39 -0.02 1.66 16 39 H 0.17 0.95 7.87 -2.39 -0.02 0.93 16 40 H 0.21 1.42 8.06 -2.91 -0.02 1.39 16 41 H 0.12 1.20 8.14 -2.38 -0.02 1.18 16 42 H 0.09 1.14 6.98 -2.38 -0.02 1.12 16 43 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.19 3.51 7.19 -2.91 -0.02 3.49 16 47 H 0.12 1.15 5.93 -2.39 -0.01 1.14 16 48 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 49 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 50 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 51 H 0.36 15.75 5.38 -92.71 -0.50 15.25 16 52 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -79.28 411.02 3.84 -75.43 By element: Atomic # 1 Polarization: 29.81 SS G_CDS: 0.36 Total: 30.16 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: 6.95 Total: -3.97 kcal Atomic # 7 Polarization: -124.06 SS G_CDS: -5.32 Total: -129.38 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.05 Total: -19.37 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.90 Total: 47.12 kcal Total: -79.28 3.84 -75.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037867577.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.871 kcal (2) G-P(sol) polarization free energy of solvation -79.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds