Wall clock time and date at job start Wed Apr 1 2020 06:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46715 * 2 1 4 4 H 1.08995 * 109.49711 * 54.93989 * 3 2 1 5 5 C 1.52763 * 109.56716 * 294.96682 * 3 2 1 6 6 N 1.46922 * 109.00817 * 185.55443 * 5 3 2 7 7 C 1.34773 * 120.62985 * 233.58098 * 6 5 3 8 8 O 1.21284 * 120.00090 * 359.72296 * 7 6 5 9 9 C 1.50700 * 120.00048 * 179.71963 * 7 6 5 10 10 N 1.46502 * 109.47239 * 180.02562 * 9 7 6 11 11 C 1.34942 * 126.03991 * 125.02562 * 10 9 7 12 12 C 1.35316 * 107.74613 * 179.75096 * 11 10 9 13 13 C 1.50706 * 126.04256 * 180.27593 * 12 11 10 14 14 C 1.53000 * 117.49862 * 188.78721 * 13 12 11 15 15 C 1.52994 * 117.50078 * 120.16243 * 13 12 11 16 16 C 1.39870 * 107.92161 * 0.39436 * 12 11 10 17 17 N 1.30836 * 108.20019 * 359.59732 * 16 12 11 18 18 C 1.46928 * 118.73968 * 53.31043 * 6 5 3 19 19 C 1.53200 * 108.77300 * 306.64034 * 18 6 5 20 20 C 1.53038 * 109.31037 * 54.63908 * 19 18 6 21 21 H 1.09003 * 109.45879 * 178.62566 * 20 19 18 22 22 N 1.46497 * 109.46429 * 58.65064 * 20 19 18 23 23 C 1.36943 * 119.99975 * 84.99956 * 22 20 19 24 24 H 1.08000 * 119.99823 * 359.97438 * 23 22 20 25 25 C 1.38811 * 119.99945 * 180.02562 * 23 22 20 26 26 N 1.31616 * 119.99704 * 180.02562 * 25 23 22 27 27 Si 1.86799 * 120.00052 * 359.97438 * 25 23 22 28 28 H 1.48503 * 109.46965 * 90.00511 * 27 25 23 29 29 H 1.48504 * 109.47042 * 210.00077 * 27 25 23 30 30 H 1.48495 * 109.47396 * 330.00102 * 27 25 23 31 31 H 1.09001 * 109.47098 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47149 * 299.99469 * 1 2 3 33 33 H 1.08997 * 109.47342 * 59.99685 * 1 2 3 34 34 H 1.08999 * 109.47149 * 240.00531 * 2 1 3 35 35 H 1.08997 * 109.47241 * 119.99768 * 2 1 3 36 36 H 1.09003 * 109.50801 * 65.66681 * 5 3 2 37 37 H 1.09003 * 109.42947 * 305.38913 * 5 3 2 38 38 H 1.08994 * 109.47031 * 60.00516 * 9 7 6 39 39 H 1.09002 * 109.47265 * 300.00313 * 9 7 6 40 40 H 1.08002 * 126.12737 * 359.97438 * 11 10 9 41 41 H 1.09000 * 115.54846 * 334.49453 * 13 12 11 42 42 H 1.08996 * 117.49787 * 359.97438 * 14 13 12 43 43 H 1.08997 * 117.49726 * 145.02069 * 14 13 12 44 44 H 1.09000 * 117.49883 * 214.97957 * 15 13 12 45 45 H 1.09000 * 117.50083 * 0.02562 * 15 13 12 46 46 H 1.08002 * 125.90382 * 179.86983 * 16 12 11 47 47 H 1.09001 * 109.58737 * 66.42982 * 18 6 5 48 48 H 1.08998 * 109.58760 * 186.71651 * 18 6 5 49 49 H 1.08999 * 109.49496 * 174.58453 * 19 18 6 50 50 H 1.08990 * 109.49894 * 294.65297 * 19 18 6 51 51 H 0.96999 * 120.00438 * 265.00094 * 22 20 19 52 52 H 0.97003 * 120.00193 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6047 1.9823 0.8410 5 6 1.6376 2.1274 -1.3049 6 7 2.2449 3.4645 -1.3506 7 6 1.4854 4.5566 -1.5672 8 8 0.2894 4.4406 -1.7316 9 6 2.1223 5.9219 -1.6050 10 7 1.0928 6.9343 -1.8529 11 6 0.8424 8.0162 -1.0863 12 6 -0.1764 8.6995 -1.6574 13 6 -0.7840 9.9792 -1.1434 14 6 -2.0603 10.4784 -1.8236 15 6 -0.7337 11.2032 -2.0599 16 6 -0.5679 8.0067 -2.8077 17 7 0.1945 6.9502 -2.9278 18 6 3.6950 3.5889 -1.1498 19 6 4.0735 2.8883 0.1589 20 6 3.5652 1.4452 0.1257 21 1 3.8544 0.9370 1.0457 22 7 4.1506 0.7477 -1.0219 23 6 5.3879 0.1708 -0.9141 24 1 5.9322 0.2304 0.0168 25 6 5.9428 -0.4897 -2.0017 26 7 7.1318 -1.0445 -1.8979 27 14 5.0016 -0.5921 -3.6119 28 1 5.3459 0.5761 -4.4617 29 1 5.3678 -1.8447 -4.3205 30 1 3.5429 -0.5891 -3.3337 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 1.8933 -0.5137 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 0.5521 2.2173 -1.3492 37 1 1.9921 1.5360 -2.1491 38 1 2.8642 5.9547 -2.4029 39 1 2.6070 6.1233 -0.6497 40 1 1.3643 8.2899 -0.1812 41 1 -0.6853 10.1490 -0.0712 42 1 -2.4603 9.8815 -2.6432 43 1 -2.8017 10.9767 -1.1990 44 1 -0.6024 12.1782 -1.5907 45 1 -0.2616 11.0828 -3.0349 46 1 -1.3595 8.2963 -3.4829 47 1 4.2207 3.1191 -1.9811 48 1 3.9671 4.6430 -1.0943 49 1 5.1576 2.8896 0.2719 50 1 3.6196 3.4152 0.9981 51 1 3.6619 0.6945 -1.8580 52 1 7.5198 -1.5057 -2.6579 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037867579.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:02:30 Heat of formation + Delta-G solvation = 86.544708 kcal Electronic energy + Delta-G solvation = -31047.923975 eV Core-core repulsion = 27050.548717 eV Total energy + Delta-G solvation = -3997.375258 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.47755 -40.20000 -38.09100 -37.19430 -34.70703 -33.95993 -33.20371 -31.84206 -30.30697 -29.94040 -29.21982 -27.58332 -25.01550 -24.00674 -23.21635 -23.10069 -22.61729 -21.47441 -20.94205 -20.27538 -19.43043 -18.31138 -17.98668 -17.41188 -16.99034 -16.02761 -15.72240 -15.54715 -15.08498 -14.60068 -14.51176 -14.40186 -14.28637 -13.97052 -13.72138 -13.50190 -13.40876 -13.17588 -12.93870 -12.65133 -12.51327 -12.48913 -12.19500 -11.98431 -11.76644 -11.67386 -11.35267 -11.18839 -11.08986 -11.02514 -10.91036 -10.70314 -10.48484 -10.45344 -10.39721 -10.26715 -10.00794 -9.90531 -9.62131 -9.38637 -9.02038 -8.47918 -8.35350 -7.35665 -5.85134 -3.20890 1.72627 2.22444 2.53714 2.61063 3.03251 3.29519 3.32519 3.39832 3.78166 4.17078 4.36511 4.50681 4.55085 4.65499 4.69460 4.81978 4.83228 4.89684 4.99729 5.04049 5.10943 5.15403 5.22587 5.29631 5.39577 5.46459 5.49176 5.49508 5.55400 5.59429 5.63626 5.70304 5.79854 5.84558 5.88482 5.95705 5.97524 6.03151 6.12432 6.18425 6.24795 6.36096 6.41290 6.46773 6.50912 6.58777 6.69536 6.76946 6.82943 7.42440 7.61597 7.90643 8.12842 8.33841 9.11738 9.84437 10.03853 11.33079 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016826 B = 0.002447 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.673111 B =11439.017176 C =11995.165550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.106 4.106 4 H 0.071 0.929 5 C 0.120 3.880 6 N -0.603 5.603 7 C 0.500 3.500 8 O -0.521 6.521 9 C 0.117 3.883 10 N -0.359 5.359 11 C 0.059 3.941 12 C -0.207 4.207 13 C -0.071 4.071 14 C -0.177 4.177 15 C -0.177 4.177 16 C 0.044 3.956 17 N -0.261 5.261 18 C 0.109 3.891 19 C -0.150 4.150 20 C 0.184 3.816 21 H 0.061 0.939 22 N -0.743 5.743 23 C -0.242 4.242 24 H 0.091 0.909 25 C 0.008 3.992 26 N -0.932 5.932 27 Si 0.877 3.123 28 H -0.285 1.285 29 H -0.291 1.291 30 H -0.278 1.278 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.067 0.933 38 H 0.114 0.886 39 H 0.125 0.875 40 H 0.173 0.827 41 H 0.107 0.893 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.178 0.822 47 H 0.084 0.916 48 H 0.070 0.930 49 H 0.082 0.918 50 H 0.053 0.947 51 H 0.360 0.640 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.494 20.114 4.139 24.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.149 4.149 3 C -0.126 4.126 4 H 0.090 0.910 5 C -0.002 4.002 6 N -0.337 5.337 7 C 0.286 3.714 8 O -0.396 6.396 9 C -0.008 4.008 10 N -0.141 5.141 11 C -0.086 4.086 12 C -0.219 4.219 13 C -0.090 4.090 14 C -0.214 4.214 15 C -0.214 4.214 16 C -0.143 4.143 17 N -0.081 5.081 18 C -0.013 4.013 19 C -0.191 4.191 20 C 0.074 3.926 21 H 0.079 0.921 22 N -0.387 5.387 23 C -0.372 4.372 24 H 0.109 0.891 25 C -0.188 4.188 26 N -0.579 5.579 27 Si 0.708 3.292 28 H -0.212 1.212 29 H -0.217 1.217 30 H -0.204 1.204 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.085 0.915 38 H 0.132 0.868 39 H 0.142 0.858 40 H 0.190 0.810 41 H 0.126 0.874 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.195 0.805 47 H 0.102 0.898 48 H 0.089 0.911 49 H 0.100 0.900 50 H 0.071 0.929 51 H 0.194 0.806 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.508 18.779 3.444 23.387 hybrid contribution -0.494 0.484 -0.706 0.989 sum -14.002 19.263 2.738 23.971 Atomic orbital electron populations 1.21858 0.96603 1.01230 1.01461 1.21433 0.94501 0.95601 1.03381 1.21728 0.97460 0.96302 0.97150 0.91044 1.21596 0.99123 0.81380 0.98133 1.48135 1.08693 1.06440 1.70397 1.20378 0.87423 0.85782 0.77843 1.90757 1.14394 1.85896 1.48551 1.21570 0.88510 0.85814 1.04952 1.47982 1.27657 1.18803 1.19616 1.22172 0.99199 0.89153 0.98069 1.19226 1.02407 1.00419 0.99839 1.20147 1.00562 0.90939 0.97390 1.22956 0.91008 1.03885 1.03552 1.23015 1.01012 0.95988 1.01428 1.23714 0.99784 0.92818 0.98002 1.77531 1.03387 1.20027 1.07147 1.21816 0.78946 1.00136 1.00443 1.22506 1.02477 0.98907 0.95160 1.20185 0.89360 0.90658 0.92347 0.92085 1.42847 1.19714 1.65758 1.10389 1.19038 0.91870 1.27069 0.99200 0.89142 1.24637 0.96440 1.00204 0.97543 1.69685 1.16276 1.41094 1.30877 0.86684 0.79612 0.77530 0.85415 1.21151 1.21695 1.20394 0.92988 0.93137 0.92886 0.91061 0.91451 0.89262 0.91512 0.86776 0.85756 0.81011 0.87448 0.88713 0.88742 0.88866 0.88821 0.80535 0.89811 0.91145 0.89976 0.92854 0.80580 0.93031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.67 37.16 0.36 -1.60 16 2 C -0.11 -1.63 5.19 -26.73 -0.14 -1.77 16 3 C -0.11 -1.56 2.12 -90.72 -0.19 -1.75 16 4 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 5 C 0.12 1.84 5.01 -3.93 -0.02 1.82 16 6 N -0.60 -8.55 2.98 -173.02 -0.52 -9.07 16 7 C 0.50 7.29 7.73 -10.99 -0.08 7.20 16 8 O -0.52 -9.65 15.12 5.55 0.08 -9.57 16 9 C 0.12 1.25 5.34 -5.19 -0.03 1.23 16 10 N -0.36 -4.52 3.40 -62.55 -0.21 -4.73 16 11 C 0.06 0.61 11.36 -17.23 -0.20 0.41 16 12 C -0.21 -2.19 5.76 -105.05 -0.61 -2.79 16 13 C -0.07 -0.57 6.25 -91.77 -0.57 -1.15 16 14 C -0.18 -1.25 10.02 -26.73 -0.27 -1.52 16 15 C -0.18 -1.23 10.23 -26.73 -0.27 -1.51 16 16 C 0.04 0.54 11.35 -17.37 -0.20 0.34 16 17 N -0.26 -3.92 11.64 30.62 0.36 -3.56 16 18 C 0.11 1.43 6.09 -3.71 -0.02 1.40 16 19 C -0.15 -2.10 5.78 -26.61 -0.15 -2.26 16 20 C 0.18 3.08 2.53 -67.89 -0.17 2.90 16 21 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 22 N -0.74 -15.45 3.52 -53.38 -0.19 -15.64 16 23 C -0.24 -6.20 10.41 -15.06 -0.16 -6.35 16 24 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 25 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 26 N -0.93 -27.97 13.97 55.49 0.78 -27.19 16 27 Si 0.88 21.23 27.73 -169.99 -4.71 16.51 16 28 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 29 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 30 H -0.28 -6.35 6.52 56.52 0.37 -5.98 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.69 6.70 -51.93 -0.35 0.34 16 34 H 0.07 1.20 7.70 -51.93 -0.40 0.80 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.09 1.43 5.72 -51.93 -0.30 1.13 16 37 H 0.07 1.13 6.64 -51.93 -0.34 0.78 16 38 H 0.11 1.07 7.94 -51.93 -0.41 0.66 16 39 H 0.12 0.88 7.62 -51.93 -0.40 0.48 16 40 H 0.17 1.13 8.06 -52.49 -0.42 0.70 16 41 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.09 0.67 6.97 -51.93 -0.36 0.31 16 43 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.18 1.70 7.19 -52.49 -0.38 1.32 16 47 H 0.08 1.30 7.74 -51.93 -0.40 0.90 16 48 H 0.07 0.67 5.93 -51.93 -0.31 0.36 16 49 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 50 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 51 H 0.36 7.63 3.82 -40.82 -0.16 7.47 16 52 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 407.35 15.07 6.14 6.14 Total: -1.00 -33.59 407.35 -9.56 -43.15 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -8.46 Total: 9.23 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -2.82 Total: -5.26 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: 0.22 Total: -60.20 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.08 Total: -9.57 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.71 Total: 16.51 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.59 -9.56 -43.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037867579.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.694 kcal (2) G-P(sol) polarization free energy of solvation -33.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds