Wall clock time and date at job start Wed Apr 1 2020 06:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.49820 * 55.00164 * 3 2 1 5 5 C 1.53192 * 109.50018 * 294.94185 * 3 2 1 6 6 N 1.46928 * 108.77721 * 185.41314 * 5 3 2 7 7 C 1.34778 * 120.62521 * 233.58058 * 6 5 3 8 8 O 1.21279 * 120.00554 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.99656 * 179.97438 * 7 6 5 10 10 N 1.46501 * 109.46974 * 180.02562 * 9 7 6 11 11 C 1.34947 * 126.03803 * 125.00505 * 10 9 7 12 12 C 1.35312 * 107.74666 * 179.97438 * 11 10 9 13 13 C 1.50694 * 126.04276 * 179.97438 * 12 11 10 14 14 C 1.52998 * 117.50378 * 188.62303 * 13 12 11 15 15 C 1.52991 * 60.00051 * 252.50947 * 14 13 12 16 16 C 1.39878 * 107.92158 * 359.97438 * 12 11 10 17 17 N 1.30837 * 108.19679 * 359.74305 * 16 12 11 18 18 C 1.46924 * 118.73866 * 53.60365 * 6 5 3 19 19 C 1.53186 * 108.77549 * 306.39158 * 18 6 5 20 20 C 1.53034 * 109.34096 * 54.62162 * 19 18 6 21 21 H 1.09002 * 109.43537 * 58.68794 * 20 19 18 22 22 N 1.46501 * 109.49032 * 178.64412 * 20 19 18 23 23 C 1.36939 * 120.00156 * 275.08925 * 22 20 19 24 24 H 1.07995 * 119.99658 * 359.97438 * 23 22 20 25 25 C 1.38809 * 119.99916 * 179.97438 * 23 22 20 26 26 N 1.31618 * 119.99898 * 179.97438 * 25 23 22 27 27 Si 1.86803 * 120.00198 * 0.02562 * 25 23 22 28 28 H 1.48496 * 109.47228 * 89.99760 * 27 25 23 29 29 H 1.48497 * 109.46917 * 209.99947 * 27 25 23 30 30 H 1.48504 * 109.47070 * 329.99627 * 27 25 23 31 31 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 32 32 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 34 34 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 35 35 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 36 36 H 1.09006 * 109.58137 * 305.19478 * 5 3 2 37 37 H 1.09002 * 109.59024 * 65.61983 * 5 3 2 38 38 H 1.09002 * 109.47270 * 300.00543 * 9 7 6 39 39 H 1.09000 * 109.47083 * 60.00160 * 9 7 6 40 40 H 1.07999 * 126.12688 * 359.95196 * 11 10 9 41 41 H 1.09001 * 115.55041 * 334.32611 * 13 12 11 42 42 H 1.09008 * 117.49831 * 359.97438 * 14 13 12 43 43 H 1.08995 * 117.50417 * 145.01432 * 14 13 12 44 44 H 1.09005 * 117.49614 * 252.51251 * 15 14 13 45 45 H 1.09004 * 117.50389 * 107.49025 * 15 14 13 46 46 H 1.07993 * 125.90402 * 179.97438 * 16 12 11 47 47 H 1.08993 * 109.58709 * 66.18313 * 18 6 5 48 48 H 1.09005 * 109.57954 * 186.60798 * 18 6 5 49 49 H 1.09005 * 109.50101 * 174.59032 * 19 18 6 50 50 H 1.09005 * 109.49897 * 294.65316 * 19 18 6 51 51 H 0.97005 * 120.00060 * 95.08035 * 22 20 19 52 52 H 0.97007 * 119.99970 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6057 1.9820 0.8417 5 6 1.6364 2.1276 -1.3094 6 7 2.2429 3.4652 -1.3498 7 6 1.4832 4.5574 -1.5654 8 8 0.2869 4.4416 -1.7278 9 6 2.1201 5.9227 -1.6035 10 7 1.0903 6.9352 -1.8502 11 6 0.8404 8.0167 -1.0828 12 6 -0.1822 8.6975 -1.6501 13 6 -0.7949 9.9725 -1.1306 14 6 -2.0720 10.4706 -1.8100 15 6 -0.7478 11.2011 -2.0411 16 6 -0.5701 8.0087 -2.8041 17 7 0.1960 6.9553 -2.9281 18 6 3.6934 3.5895 -1.1512 19 6 4.0739 2.8881 0.1564 20 6 3.5654 1.4451 0.1241 21 1 4.0001 0.9264 -0.7304 22 7 3.9556 0.7615 1.3597 23 6 5.1939 0.1857 1.4619 24 1 5.8826 0.2352 0.6315 25 6 5.5638 -0.4615 2.6328 26 7 6.7538 -1.0153 2.7309 27 14 4.3723 -0.5477 4.0689 28 1 3.5400 -1.7716 3.9487 29 1 5.1346 -0.5905 5.3426 30 1 3.4952 0.6506 4.0570 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5139 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.8933 -0.5138 -0.8900 36 1 1.9930 1.5390 -2.1547 37 1 0.5510 2.2169 -1.3556 38 1 2.6056 6.1239 -0.6485 39 1 2.8613 5.9557 -2.4019 40 1 1.3626 8.2897 -0.1778 41 1 -0.6982 10.1373 -0.0575 42 1 -2.4690 9.8763 -2.6331 43 1 -2.8160 10.9631 -1.1838 44 1 -0.6205 12.1743 -1.5668 45 1 -0.2736 11.0873 -3.0159 46 1 -1.3622 8.2985 -3.4785 47 1 4.2177 3.1202 -1.9836 48 1 3.9651 4.6435 -1.0930 49 1 5.1582 2.8893 0.2678 50 1 3.6213 3.4146 0.9968 51 1 3.3370 0.7168 2.1055 52 1 7.0122 -1.4679 3.5490 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037867580.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:02:34 Heat of formation + Delta-G solvation = 84.262936 kcal Electronic energy + Delta-G solvation = -30603.056625 eV Core-core repulsion = 26605.582422 eV Total energy + Delta-G solvation = -3997.474203 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.52125 -40.20390 -38.03302 -37.21842 -34.97310 -34.03545 -33.24490 -31.86011 -30.34986 -29.99720 -29.35884 -27.56530 -25.03971 -24.04740 -23.13405 -22.71482 -22.54515 -21.43240 -20.91851 -20.31822 -19.89788 -18.95397 -17.73227 -17.42096 -17.08201 -16.07887 -15.77926 -15.58528 -15.16423 -14.71394 -14.45283 -14.43257 -14.26756 -13.86652 -13.76640 -13.52644 -13.37967 -13.19848 -12.92906 -12.75859 -12.59105 -12.41856 -12.19211 -12.07820 -11.89665 -11.78551 -11.48182 -11.12218 -11.09904 -11.08851 -10.87072 -10.73490 -10.53138 -10.50890 -10.38793 -10.27363 -10.09154 -9.81900 -9.64806 -9.44360 -8.99974 -8.65153 -8.39182 -7.35040 -5.84602 -3.20437 1.67766 2.17119 2.44963 2.57097 2.92759 3.31292 3.34478 3.40188 3.76069 4.09597 4.30155 4.51683 4.51978 4.62817 4.67432 4.72979 4.80442 4.82234 4.95549 4.97609 5.03955 5.11896 5.13537 5.25538 5.37703 5.39592 5.45082 5.46953 5.51414 5.52097 5.61568 5.72423 5.81921 5.83637 5.86243 5.93910 5.95393 6.00651 6.01073 6.16219 6.19712 6.27366 6.34783 6.45661 6.47237 6.63114 6.70328 6.76144 6.85651 7.29454 7.56674 7.90509 8.03365 8.34386 9.12334 9.85183 10.04775 11.33482 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017105 B = 0.002198 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.526867 B =12737.564427 C =13189.916387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.108 4.108 4 H 0.068 0.932 5 C 0.122 3.878 6 N -0.606 5.606 7 C 0.502 3.498 8 O -0.518 6.518 9 C 0.117 3.883 10 N -0.360 5.360 11 C 0.060 3.940 12 C -0.206 4.206 13 C -0.072 4.072 14 C -0.177 4.177 15 C -0.177 4.177 16 C 0.045 3.955 17 N -0.263 5.263 18 C 0.104 3.896 19 C -0.153 4.153 20 C 0.188 3.812 21 H 0.058 0.942 22 N -0.744 5.744 23 C -0.243 4.243 24 H 0.090 0.910 25 C 0.006 3.994 26 N -0.932 5.932 27 Si 0.881 3.119 28 H -0.284 1.284 29 H -0.291 1.291 30 H -0.278 1.278 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.125 0.875 39 H 0.114 0.886 40 H 0.173 0.827 41 H 0.108 0.892 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.178 0.822 47 H 0.074 0.926 48 H 0.075 0.925 49 H 0.083 0.917 50 H 0.059 0.941 51 H 0.361 0.639 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.512 20.093 -9.642 25.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.151 4.151 3 C -0.128 4.128 4 H 0.087 0.913 5 C 0.000 4.000 6 N -0.340 5.340 7 C 0.287 3.713 8 O -0.393 6.393 9 C -0.009 4.009 10 N -0.142 5.142 11 C -0.085 4.085 12 C -0.218 4.218 13 C -0.091 4.091 14 C -0.214 4.214 15 C -0.214 4.214 16 C -0.142 4.142 17 N -0.083 5.083 18 C -0.019 4.019 19 C -0.194 4.194 20 C 0.078 3.922 21 H 0.076 0.924 22 N -0.386 5.386 23 C -0.373 4.373 24 H 0.108 0.892 25 C -0.190 4.190 26 N -0.580 5.580 27 Si 0.712 3.288 28 H -0.210 1.210 29 H -0.218 1.218 30 H -0.204 1.204 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.143 0.857 39 H 0.132 0.868 40 H 0.190 0.810 41 H 0.126 0.874 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.195 0.805 47 H 0.092 0.908 48 H 0.093 0.907 49 H 0.101 0.899 50 H 0.077 0.923 51 H 0.194 0.806 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.512 18.759 -10.441 24.849 hybrid contribution -0.698 0.560 1.822 2.030 sum -13.209 19.320 -8.619 24.940 Atomic orbital electron populations 1.21858 0.96600 1.01245 1.01456 1.21458 0.94567 0.95608 1.03463 1.21836 0.97603 0.96359 0.97027 0.91318 1.21734 0.99523 0.81100 0.97663 1.48156 1.08517 1.06623 1.70709 1.20400 0.87445 0.85791 0.77683 1.90765 1.14345 1.85854 1.48292 1.21566 0.88522 0.85785 1.04984 1.47959 1.27860 1.18829 1.19532 1.22191 0.99151 0.89089 0.98080 1.19229 1.02184 1.00571 0.99809 1.20154 1.00540 0.90973 0.97456 1.22955 0.91023 1.03874 1.03522 1.23015 1.01033 0.95932 1.01440 1.23712 0.99682 0.92877 0.97935 1.77496 1.03625 1.20097 1.07043 1.21929 0.79273 1.00968 0.99700 1.22663 1.02779 0.98943 0.94983 1.20151 0.90661 0.90593 0.90766 0.92400 1.42779 1.16618 1.66258 1.12967 1.19034 0.90615 1.27230 1.00443 0.89177 1.24660 0.96412 1.00223 0.97677 1.69695 1.19266 1.41396 1.27606 0.86603 0.80948 0.77831 0.83426 1.21038 1.21791 1.20406 0.93105 0.92969 0.92934 0.90465 0.91845 0.91292 0.89064 0.85703 0.86800 0.80970 0.87416 0.88712 0.88720 0.88853 0.88822 0.80501 0.90757 0.90697 0.89854 0.92255 0.80602 0.93032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.67 37.16 0.36 -1.61 16 2 C -0.11 -1.66 5.31 -26.73 -0.14 -1.80 16 3 C -0.11 -1.59 1.92 -90.50 -0.17 -1.77 16 4 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 5 C 0.12 1.63 5.32 -3.71 -0.02 1.61 16 6 N -0.61 -7.49 2.97 -172.77 -0.51 -8.01 16 7 C 0.50 6.67 7.73 -10.98 -0.08 6.59 16 8 O -0.52 -9.06 15.13 5.56 0.08 -8.98 16 9 C 0.12 1.13 5.34 -5.19 -0.03 1.10 16 10 N -0.36 -4.27 3.39 -62.54 -0.21 -4.48 16 11 C 0.06 0.60 11.36 -17.23 -0.20 0.40 16 12 C -0.21 -2.10 5.76 -105.05 -0.61 -2.70 16 13 C -0.07 -0.57 6.25 -91.78 -0.57 -1.14 16 14 C -0.18 -1.21 10.02 -26.74 -0.27 -1.47 16 15 C -0.18 -1.18 10.23 -26.74 -0.27 -1.46 16 16 C 0.05 0.52 11.35 -17.36 -0.20 0.32 16 17 N -0.26 -3.70 11.66 30.62 0.36 -3.34 16 18 C 0.10 1.11 6.34 -3.71 -0.02 1.09 16 19 C -0.15 -2.18 5.66 -26.62 -0.15 -2.33 16 20 C 0.19 3.18 2.19 -67.89 -0.15 3.03 16 21 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 22 N -0.74 -16.03 4.14 -53.39 -0.22 -16.25 16 23 C -0.24 -6.37 10.41 -15.06 -0.16 -6.53 16 24 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 25 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 26 N -0.93 -28.20 13.97 55.49 0.78 -27.43 16 27 Si 0.88 21.36 27.74 -169.99 -4.71 16.64 16 28 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 29 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 30 H -0.28 -6.36 6.52 56.52 0.37 -5.99 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.64 6.70 -51.93 -0.35 0.29 16 34 H 0.08 1.31 7.22 -51.93 -0.37 0.94 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.09 1.32 5.72 -51.93 -0.30 1.02 16 38 H 0.13 0.82 7.62 -51.93 -0.40 0.42 16 39 H 0.11 0.87 7.94 -51.93 -0.41 0.46 16 40 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 41 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.09 0.64 6.98 -51.92 -0.36 0.27 16 43 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.18 1.59 7.19 -52.49 -0.38 1.21 16 47 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 48 H 0.07 0.56 5.93 -51.93 -0.31 0.26 16 49 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 50 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 51 H 0.36 7.87 5.37 -40.82 -0.22 7.66 16 52 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 411.01 15.07 6.19 6.19 Total: -1.00 -34.34 411.01 -9.63 -43.97 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -8.60 Total: 8.27 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -2.78 Total: -6.60 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: 0.19 Total: -59.51 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.08 Total: -8.98 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.71 Total: 16.64 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.34 -9.63 -43.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037867580.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.235 kcal (2) G-P(sol) polarization free energy of solvation -34.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds