Wall clock time and date at job start Wed Apr 1 2020 06:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.49820 * 55.00164 * 3 2 1 5 5 C 1.53192 * 109.50018 * 294.94185 * 3 2 1 6 6 N 1.46928 * 108.77721 * 185.41314 * 5 3 2 7 7 C 1.34778 * 120.62521 * 233.58058 * 6 5 3 8 8 O 1.21279 * 120.00554 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.99656 * 179.97438 * 7 6 5 10 10 N 1.46501 * 109.46974 * 180.02562 * 9 7 6 11 11 C 1.34947 * 126.03803 * 125.00505 * 10 9 7 12 12 C 1.35312 * 107.74666 * 179.97438 * 11 10 9 13 13 C 1.50694 * 126.04276 * 179.97438 * 12 11 10 14 14 C 1.52998 * 117.50378 * 188.62303 * 13 12 11 15 15 C 1.52991 * 60.00051 * 252.50947 * 14 13 12 16 16 C 1.39878 * 107.92158 * 359.97438 * 12 11 10 17 17 N 1.30837 * 108.19679 * 359.74305 * 16 12 11 18 18 C 1.46924 * 118.73866 * 53.60365 * 6 5 3 19 19 C 1.53186 * 108.77549 * 306.39158 * 18 6 5 20 20 C 1.53034 * 109.34096 * 54.62162 * 19 18 6 21 21 H 1.09002 * 109.43537 * 58.68794 * 20 19 18 22 22 N 1.46501 * 109.49032 * 178.64412 * 20 19 18 23 23 C 1.36939 * 120.00156 * 275.08925 * 22 20 19 24 24 H 1.07995 * 119.99658 * 359.97438 * 23 22 20 25 25 C 1.38809 * 119.99916 * 179.97438 * 23 22 20 26 26 N 1.31618 * 119.99898 * 179.97438 * 25 23 22 27 27 Si 1.86803 * 120.00198 * 0.02562 * 25 23 22 28 28 H 1.48496 * 109.47228 * 89.99760 * 27 25 23 29 29 H 1.48497 * 109.46917 * 209.99947 * 27 25 23 30 30 H 1.48504 * 109.47070 * 329.99627 * 27 25 23 31 31 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 32 32 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 34 34 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 35 35 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 36 36 H 1.09006 * 109.58137 * 305.19478 * 5 3 2 37 37 H 1.09002 * 109.59024 * 65.61983 * 5 3 2 38 38 H 1.09002 * 109.47270 * 300.00543 * 9 7 6 39 39 H 1.09000 * 109.47083 * 60.00160 * 9 7 6 40 40 H 1.07999 * 126.12688 * 359.95196 * 11 10 9 41 41 H 1.09001 * 115.55041 * 334.32611 * 13 12 11 42 42 H 1.09008 * 117.49831 * 359.97438 * 14 13 12 43 43 H 1.08995 * 117.50417 * 145.01432 * 14 13 12 44 44 H 1.09005 * 117.49614 * 252.51251 * 15 14 13 45 45 H 1.09004 * 117.50389 * 107.49025 * 15 14 13 46 46 H 1.07993 * 125.90402 * 179.97438 * 16 12 11 47 47 H 1.08993 * 109.58709 * 66.18313 * 18 6 5 48 48 H 1.09005 * 109.57954 * 186.60798 * 18 6 5 49 49 H 1.09005 * 109.50101 * 174.59032 * 19 18 6 50 50 H 1.09005 * 109.49897 * 294.65316 * 19 18 6 51 51 H 0.97005 * 120.00060 * 95.08035 * 22 20 19 52 52 H 0.97007 * 119.99970 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6057 1.9820 0.8417 5 6 1.6364 2.1276 -1.3094 6 7 2.2429 3.4652 -1.3498 7 6 1.4832 4.5574 -1.5654 8 8 0.2869 4.4416 -1.7278 9 6 2.1201 5.9227 -1.6035 10 7 1.0903 6.9352 -1.8502 11 6 0.8404 8.0167 -1.0828 12 6 -0.1822 8.6975 -1.6501 13 6 -0.7949 9.9725 -1.1306 14 6 -2.0720 10.4706 -1.8100 15 6 -0.7478 11.2011 -2.0411 16 6 -0.5701 8.0087 -2.8041 17 7 0.1960 6.9553 -2.9281 18 6 3.6934 3.5895 -1.1512 19 6 4.0739 2.8881 0.1564 20 6 3.5654 1.4451 0.1241 21 1 4.0001 0.9264 -0.7304 22 7 3.9556 0.7615 1.3597 23 6 5.1939 0.1857 1.4619 24 1 5.8826 0.2352 0.6315 25 6 5.5638 -0.4615 2.6328 26 7 6.7538 -1.0153 2.7309 27 14 4.3723 -0.5477 4.0689 28 1 3.5400 -1.7716 3.9487 29 1 5.1346 -0.5905 5.3426 30 1 3.4952 0.6506 4.0570 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5139 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.8933 -0.5138 -0.8900 36 1 1.9930 1.5390 -2.1547 37 1 0.5510 2.2169 -1.3556 38 1 2.6056 6.1239 -0.6485 39 1 2.8613 5.9557 -2.4019 40 1 1.3626 8.2897 -0.1778 41 1 -0.6982 10.1373 -0.0575 42 1 -2.4690 9.8763 -2.6331 43 1 -2.8160 10.9631 -1.1838 44 1 -0.6205 12.1743 -1.5668 45 1 -0.2736 11.0873 -3.0159 46 1 -1.3622 8.2985 -3.4785 47 1 4.2177 3.1202 -1.9836 48 1 3.9651 4.6435 -1.0930 49 1 5.1582 2.8893 0.2678 50 1 3.6213 3.4146 0.9968 51 1 3.3370 0.7168 2.1055 52 1 7.0122 -1.4679 3.5490 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037867580.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:02:33 Heat of formation + Delta-G solvation = 63.635667 kcal Electronic energy + Delta-G solvation = -30603.951090 eV Core-core repulsion = 26605.582422 eV Total energy + Delta-G solvation = -3998.368668 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.30324 -41.25112 -39.23348 -37.81107 -36.31825 -35.44268 -34.06798 -33.61691 -31.52239 -31.11858 -30.40495 -28.52107 -26.42287 -25.17222 -24.17760 -23.78774 -23.15674 -22.34518 -22.14883 -21.35041 -20.91407 -19.98829 -19.39980 -18.46517 -17.89507 -16.97307 -16.77571 -16.68711 -16.29113 -16.04560 -15.70291 -15.34673 -15.19365 -14.93728 -14.85454 -14.73056 -14.58041 -14.40016 -14.16688 -13.95690 -13.64295 -13.39411 -13.29523 -13.10099 -12.92624 -12.84444 -12.69421 -12.58760 -12.27176 -12.13315 -12.10924 -11.85034 -11.75574 -11.65028 -11.59416 -11.38817 -11.14878 -11.13382 -11.08912 -10.88525 -10.30700 -9.72773 -9.26193 -9.10904 -7.99461 -5.31004 0.91156 1.37663 1.39310 1.44828 1.46231 1.48264 1.81548 1.99393 2.49154 3.20997 3.25955 3.32797 3.53537 3.60083 3.72766 3.92208 3.94350 3.99372 4.02705 4.10672 4.13645 4.20556 4.27760 4.29813 4.31143 4.37513 4.43512 4.54763 4.58218 4.66019 4.75351 4.76669 4.80573 4.84297 4.89397 4.97039 5.01083 5.08850 5.13890 5.17563 5.21649 5.31052 5.37161 5.42073 5.42550 5.48159 5.60941 5.70379 5.81386 6.05551 6.24703 6.33297 6.77173 7.05158 7.10863 7.88028 8.05734 9.21913 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017105 B = 0.002198 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.526867 B =12737.564427 C =13189.916387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.113 4.113 3 C -0.095 4.095 4 H 0.061 0.939 5 C 0.128 3.872 6 N -0.604 5.604 7 C 0.499 3.501 8 O -0.565 6.565 9 C 0.115 3.885 10 N -0.369 5.369 11 C 0.059 3.941 12 C -0.216 4.216 13 C -0.082 4.082 14 C -0.179 4.179 15 C -0.170 4.170 16 C 0.036 3.964 17 N -0.314 5.314 18 C 0.111 3.889 19 C -0.144 4.144 20 C 0.180 3.820 21 H 0.048 0.952 22 N -0.747 5.747 23 C -0.215 4.215 24 H 0.063 0.937 25 C -0.063 4.063 26 N -0.983 5.983 27 Si 0.945 3.055 28 H -0.283 1.283 29 H -0.300 1.300 30 H -0.255 1.255 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.163 0.837 39 H 0.138 0.862 40 H 0.208 0.792 41 H 0.119 0.881 42 H 0.091 0.909 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.087 0.913 46 H 0.189 0.811 47 H 0.085 0.915 48 H 0.118 0.882 49 H 0.069 0.931 50 H 0.059 0.941 51 H 0.362 0.638 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.522 22.621 -9.529 28.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.151 4.151 3 C -0.115 4.115 4 H 0.080 0.920 5 C 0.005 3.995 6 N -0.337 5.337 7 C 0.287 3.713 8 O -0.443 6.443 9 C -0.009 4.009 10 N -0.151 5.151 11 C -0.086 4.086 12 C -0.228 4.228 13 C -0.101 4.101 14 C -0.216 4.216 15 C -0.207 4.207 16 C -0.150 4.150 17 N -0.134 5.134 18 C -0.012 4.012 19 C -0.185 4.185 20 C 0.072 3.928 21 H 0.066 0.934 22 N -0.389 5.389 23 C -0.346 4.346 24 H 0.081 0.919 25 C -0.254 4.254 26 N -0.634 5.634 27 Si 0.774 3.226 28 H -0.210 1.210 29 H -0.228 1.228 30 H -0.180 1.180 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.181 0.819 39 H 0.156 0.844 40 H 0.225 0.775 41 H 0.137 0.863 42 H 0.109 0.891 43 H 0.124 0.876 44 H 0.126 0.874 45 H 0.105 0.895 46 H 0.206 0.794 47 H 0.104 0.896 48 H 0.136 0.864 49 H 0.088 0.912 50 H 0.077 0.923 51 H 0.194 0.806 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.550 21.335 -10.369 27.318 hybrid contribution -0.395 -0.209 1.670 1.729 sum -13.945 21.126 -8.699 26.766 Atomic orbital electron populations 1.21792 0.94950 1.01995 1.01744 1.21426 0.96027 0.95344 1.02290 1.21673 0.95609 0.96515 0.97671 0.92009 1.21578 0.99131 0.81941 0.96898 1.48205 1.09145 1.06113 1.70223 1.21064 0.86901 0.87046 0.76332 1.90749 1.16542 1.86629 1.50422 1.21858 0.88172 0.83027 1.07876 1.48130 1.28037 1.19629 1.19339 1.22816 0.98918 0.88225 0.98604 1.19553 1.02412 1.01390 0.99420 1.20237 1.01198 0.90487 0.98160 1.23038 0.91222 1.03816 1.03500 1.23035 1.00582 0.96117 1.00945 1.24054 0.99644 0.92595 0.98755 1.77411 1.05341 1.21616 1.09035 1.22013 0.78116 1.03294 0.97735 1.22457 1.01690 0.97055 0.97311 1.20416 0.92271 0.91772 0.88322 0.93376 1.42794 1.14945 1.66597 1.14602 1.18993 0.91428 1.25214 0.98944 0.91890 1.25369 0.98112 1.01246 1.00714 1.69862 1.21629 1.43711 1.28238 0.85557 0.78931 0.78530 0.79602 1.21005 1.22754 1.18020 0.93227 0.92035 0.92192 0.92930 0.91679 0.90443 0.89988 0.81932 0.84394 0.77541 0.86280 0.89067 0.87597 0.87434 0.89465 0.79405 0.89648 0.86416 0.91222 0.92266 0.80550 0.93612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 9.67 71.98 0.70 -2.89 16 2 C -0.11 -3.22 5.31 30.59 0.16 -3.06 16 3 C -0.09 -2.67 1.92 -10.72 -0.02 -2.69 16 4 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 5 C 0.13 3.20 5.32 86.36 0.46 3.66 16 6 N -0.60 -13.39 2.97 -818.90 -2.43 -15.82 16 7 C 0.50 12.13 7.73 87.66 0.68 12.80 16 8 O -0.57 -19.29 15.13 -3.02 -0.05 -19.34 16 9 C 0.11 1.81 5.34 85.63 0.46 2.27 16 10 N -0.37 -7.92 3.39 -351.79 -1.19 -9.11 16 11 C 0.06 1.02 11.36 83.54 0.95 1.96 16 12 C -0.22 -4.04 5.76 -20.14 -0.12 -4.15 16 13 C -0.08 -1.12 6.25 -11.54 -0.07 -1.19 16 14 C -0.18 -2.15 10.02 30.59 0.31 -1.84 16 15 C -0.17 -1.93 10.23 30.59 0.31 -1.62 16 16 C 0.04 0.81 11.35 85.24 0.97 1.78 16 17 N -0.31 -8.60 11.66 -57.02 -0.66 -9.26 16 18 C 0.11 1.97 6.34 86.36 0.55 2.52 16 19 C -0.14 -3.82 5.66 30.67 0.17 -3.65 16 20 C 0.18 5.90 2.19 45.02 0.10 6.00 16 21 H 0.05 1.68 8.08 -2.39 -0.02 1.66 16 22 N -0.75 -31.77 4.14 -322.83 -1.34 -33.10 16 23 C -0.21 -11.36 10.41 84.03 0.87 -10.48 16 24 H 0.06 3.63 8.06 -2.91 -0.02 3.61 16 25 C -0.06 -3.57 5.50 84.86 0.47 -3.11 16 26 N -0.98 -61.14 13.97 21.65 0.30 -60.84 16 27 Si 0.94 44.45 27.74 68.60 1.90 46.35 16 28 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 29 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 30 H -0.26 -10.89 6.52 99.48 0.65 -10.24 16 31 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.06 1.37 6.70 -2.38 -0.02 1.35 16 34 H 0.05 1.77 7.22 -2.39 -0.02 1.75 16 35 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 37 H 0.08 2.28 5.72 -2.39 -0.01 2.27 16 38 H 0.16 1.27 7.62 -2.39 -0.02 1.25 16 39 H 0.14 1.51 7.94 -2.39 -0.02 1.49 16 40 H 0.21 1.83 8.06 -2.91 -0.02 1.81 16 41 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.09 1.14 6.98 -2.38 -0.02 1.12 16 43 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.11 0.91 8.14 -2.38 -0.02 0.89 16 45 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 46 H 0.19 3.37 7.19 -2.91 -0.02 3.35 16 47 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 48 H 0.12 1.16 5.93 -2.38 -0.01 1.14 16 49 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 50 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 51 H 0.36 15.34 5.37 -92.70 -0.50 14.84 16 52 H 0.25 15.28 8.31 -92.70 -0.77 14.50 16 Total: -1.00 -77.74 411.01 3.83 -73.91 By element: Atomic # 1 Polarization: 30.54 SS G_CDS: 0.36 Total: 30.90 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: 6.94 Total: -3.68 kcal Atomic # 7 Polarization: -122.81 SS G_CDS: -5.33 Total: -128.13 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.05 Total: -19.34 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.90 Total: 46.35 kcal Total: -77.74 3.83 -73.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037867580.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.541 kcal (2) G-P(sol) polarization free energy of solvation -77.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds