Wall clock time and date at job start Wed Apr 1 2020 06:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47266 * 2 1 4 4 H 1.09004 * 109.51583 * 305.07859 * 3 2 1 5 5 C 1.53188 * 109.50022 * 65.15805 * 3 2 1 6 6 N 1.46924 * 108.77780 * 174.58802 * 5 3 2 7 7 C 1.34771 * 120.62958 * 126.41070 * 6 5 3 8 8 O 1.21280 * 120.00414 * 0.02562 * 7 6 5 9 9 C 1.50711 * 119.99990 * 180.02562 * 7 6 5 10 10 N 1.46500 * 109.47261 * 179.97438 * 9 7 6 11 11 C 1.34952 * 126.03288 * 124.71587 * 10 9 7 12 12 C 1.35319 * 107.74233 * 179.84371 * 11 10 9 13 13 C 1.50699 * 126.03897 * 180.16213 * 12 11 10 14 14 C 1.52995 * 117.50020 * 188.90198 * 13 12 11 15 15 C 1.52999 * 60.00119 * 252.51030 * 14 13 12 16 16 C 1.39870 * 107.91898 * 0.42151 * 12 11 10 17 17 N 1.30832 * 108.20662 * 359.74122 * 16 12 11 18 18 C 1.46931 * 118.73773 * 306.39768 * 6 5 3 19 19 C 1.53185 * 108.77641 * 53.60349 * 18 6 5 20 20 C 1.53035 * 109.49709 * 185.00288 * 3 2 1 21 21 H 1.08998 * 109.46520 * 58.67400 * 20 3 2 22 22 N 1.46500 * 109.45711 * 298.69630 * 20 3 2 23 23 C 1.36943 * 119.99878 * 155.00084 * 22 20 3 24 24 H 1.07996 * 119.99698 * 0.02562 * 23 22 20 25 25 C 1.38809 * 119.99902 * 179.97438 * 23 22 20 26 26 N 1.31620 * 120.00319 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00011 * 180.02562 * 25 23 22 28 28 H 1.48506 * 109.47297 * 59.99967 * 27 25 23 29 29 H 1.48503 * 109.47261 * 300.00148 * 27 25 23 30 30 H 1.48500 * 109.47454 * 180.02562 * 27 25 23 31 31 H 1.08998 * 109.46967 * 300.00157 * 1 2 3 32 32 H 1.08998 * 109.47047 * 60.00046 * 1 2 3 33 33 H 1.09003 * 109.47236 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.47345 * 239.99459 * 2 1 3 35 35 H 1.09002 * 109.46848 * 119.99488 * 2 1 3 36 36 H 1.09006 * 109.58625 * 294.37701 * 5 3 2 37 37 H 1.09005 * 109.58706 * 54.65764 * 5 3 2 38 38 H 1.08992 * 109.47258 * 300.00607 * 9 7 6 39 39 H 1.08998 * 109.46461 * 60.00436 * 9 7 6 40 40 H 1.07997 * 126.12876 * 0.02562 * 11 10 9 41 41 H 1.09002 * 115.54913 * 334.61678 * 13 12 11 42 42 H 1.09002 * 117.49945 * 0.02562 * 14 13 12 43 43 H 1.09005 * 117.49884 * 145.01872 * 14 13 12 44 44 H 1.08995 * 117.49728 * 252.50971 * 15 14 13 45 45 H 1.09004 * 117.49520 * 107.49260 * 15 14 13 46 46 H 1.08002 * 125.89569 * 179.75745 * 16 12 11 47 47 H 1.08997 * 109.58256 * 173.39535 * 18 6 5 48 48 H 1.09001 * 109.58249 * 293.67215 * 18 6 5 49 49 H 1.09003 * 109.49822 * 185.41272 * 19 18 6 50 50 H 1.08999 * 109.49921 * 65.32134 * 19 18 6 51 51 H 0.97000 * 120.00415 * 335.00032 * 22 20 3 52 52 H 0.97001 * 119.99542 * 359.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6048 1.9826 -0.8408 5 6 1.6386 2.1268 1.3104 6 7 2.2451 3.4644 1.3506 7 6 1.4858 4.5564 1.5679 8 8 0.2899 4.4405 1.7330 9 6 2.1228 5.9218 1.6057 10 7 1.0935 6.9342 1.8545 11 6 1.0986 7.8430 2.8520 12 6 -0.0214 8.5929 2.7324 13 6 -0.4260 9.7321 3.6323 14 6 -1.8294 10.3131 3.4489 15 6 -0.6060 11.1094 2.9908 16 6 -0.7402 8.1201 1.6297 17 7 -0.0729 7.1257 1.1026 18 6 3.6953 3.5888 1.1496 19 6 4.0737 2.8881 -0.1589 20 6 3.5652 1.4450 -0.1258 21 1 3.8546 0.9370 -1.0457 22 7 4.1507 0.7475 1.0218 23 6 5.3885 0.1718 0.9145 24 1 5.9333 0.2322 -0.0161 25 6 5.9435 -0.4886 2.0020 26 7 5.2798 -0.5618 3.1363 27 14 7.6323 -1.2734 1.8559 28 1 8.6351 -0.2311 1.5192 29 1 7.6091 -2.3021 0.7851 30 1 7.9951 -1.9114 3.1468 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 0.5532 2.2162 1.3584 37 1 1.9943 1.5365 2.1549 38 1 2.8652 5.9544 2.4029 39 1 2.6067 6.1234 0.6501 40 1 1.8615 7.9541 3.6083 41 1 -0.0236 9.6972 4.6447 42 1 -2.4603 9.8711 2.6777 43 1 -2.3509 10.6603 4.3409 44 1 -0.3225 11.9806 3.5814 45 1 -0.4319 11.1916 1.9179 46 1 -1.6831 8.5088 1.2744 47 1 3.9670 4.6428 1.0917 48 1 4.2209 3.1212 1.9823 49 1 5.1578 2.8894 -0.2721 50 1 3.6193 3.4147 -0.9982 51 1 3.6616 0.6936 1.8578 52 1 4.4030 -0.1539 3.2123 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037867581.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:02:39 Heat of formation + Delta-G solvation = 82.878340 kcal Electronic energy + Delta-G solvation = -30975.702910 eV Core-core repulsion = 26978.168667 eV Total energy + Delta-G solvation = -3997.534243 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.44519 -40.12821 -38.01954 -37.16506 -34.67581 -34.05994 -33.16724 -31.87255 -30.27658 -29.52636 -28.78368 -27.41458 -24.79873 -23.91608 -23.48904 -23.07258 -22.59524 -21.45200 -20.96104 -20.24752 -19.37271 -18.47711 -17.55013 -17.30299 -16.94676 -15.95792 -15.73083 -15.53808 -15.16916 -14.62037 -14.56158 -14.27093 -14.20166 -13.84720 -13.73125 -13.42552 -13.40811 -13.18150 -12.89295 -12.85597 -12.47882 -12.34050 -12.13663 -11.85120 -11.74380 -11.61323 -11.27165 -11.06199 -11.04103 -10.77872 -10.68175 -10.64114 -10.45949 -10.38308 -10.28206 -10.04778 -9.96774 -9.92742 -9.34806 -9.21702 -8.99209 -8.41035 -8.32172 -7.10979 -6.16221 -3.17116 1.75411 2.26126 2.58460 2.63614 3.09395 3.46549 3.49177 3.66944 3.80729 4.20028 4.41392 4.60086 4.60830 4.68579 4.72355 4.82532 4.85921 4.95534 5.03233 5.12870 5.18410 5.18848 5.31389 5.37352 5.41715 5.52445 5.55263 5.58058 5.62777 5.65793 5.66627 5.78238 5.87395 5.87946 5.90670 6.01779 6.03522 6.06087 6.19563 6.23710 6.29414 6.42062 6.46611 6.53752 6.53914 6.62961 6.77254 6.81322 6.87423 7.48677 7.64238 7.74539 8.18204 8.68183 9.14338 10.00877 10.16248 11.31222 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016276 B = 0.002342 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.876989 B =11953.381213 C =12964.524723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.109 4.109 3 C -0.105 4.105 4 H 0.068 0.932 5 C 0.122 3.878 6 N -0.601 5.601 7 C 0.500 3.500 8 O -0.522 6.522 9 C 0.117 3.883 10 N -0.358 5.358 11 C 0.060 3.940 12 C -0.207 4.207 13 C -0.071 4.071 14 C -0.177 4.177 15 C -0.177 4.177 16 C 0.044 3.956 17 N -0.262 5.262 18 C 0.112 3.888 19 C -0.150 4.150 20 C 0.184 3.816 21 H 0.053 0.947 22 N -0.729 5.729 23 C -0.329 4.329 24 H 0.064 0.936 25 C -0.043 4.043 26 N -0.943 5.943 27 Si 1.077 2.923 28 H -0.296 1.296 29 H -0.296 1.296 30 H -0.286 1.286 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.124 0.876 39 H 0.114 0.886 40 H 0.173 0.827 41 H 0.108 0.892 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.178 0.822 47 H 0.067 0.933 48 H 0.085 0.915 49 H 0.076 0.924 50 H 0.050 0.950 51 H 0.366 0.634 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.567 18.527 -2.413 20.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.125 4.125 4 H 0.087 0.913 5 C 0.000 4.000 6 N -0.335 5.335 7 C 0.285 3.715 8 O -0.397 6.397 9 C -0.008 4.008 10 N -0.140 5.140 11 C -0.086 4.086 12 C -0.219 4.219 13 C -0.090 4.090 14 C -0.214 4.214 15 C -0.214 4.214 16 C -0.143 4.143 17 N -0.081 5.081 18 C -0.010 4.010 19 C -0.191 4.191 20 C 0.074 3.926 21 H 0.071 0.929 22 N -0.373 5.373 23 C -0.460 4.460 24 H 0.082 0.918 25 C -0.241 4.241 26 N -0.588 5.588 27 Si 0.908 3.092 28 H -0.224 1.224 29 H -0.224 1.224 30 H -0.211 1.211 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.088 0.912 38 H 0.142 0.858 39 H 0.131 0.869 40 H 0.190 0.810 41 H 0.126 0.874 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.195 0.805 47 H 0.086 0.914 48 H 0.103 0.897 49 H 0.095 0.905 50 H 0.069 0.931 51 H 0.201 0.799 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.746 16.570 -2.651 18.482 hybrid contribution -1.051 1.415 0.011 1.763 sum -8.797 17.986 -2.640 20.195 Atomic orbital electron populations 1.21854 0.96626 1.01153 1.01452 1.21402 0.94433 0.95613 1.03223 1.21778 0.97405 0.96213 0.97070 0.91346 1.21657 0.98938 0.81264 0.98121 1.48114 1.08648 1.06439 1.70249 1.20369 0.87419 0.85727 0.77971 1.90753 1.14282 1.85837 1.48823 1.21567 0.88176 0.85589 1.05480 1.47984 1.17650 1.25661 1.22731 1.22193 1.00129 0.92172 0.94063 1.19220 0.97641 1.03294 1.01747 1.20149 0.99732 0.91171 0.97986 1.22955 0.90874 1.04120 1.03444 1.23013 1.02629 0.94485 1.01321 1.23705 1.00177 0.94795 0.95660 1.77509 0.94457 1.17752 1.18411 1.21771 0.79043 0.99847 1.00374 1.22511 1.02021 0.99297 0.95258 1.20148 0.89514 0.90523 0.92440 0.92938 1.42478 1.19417 1.65180 1.10227 1.20006 0.94606 1.31714 0.99643 0.91831 1.25693 1.05575 1.00118 0.92732 1.70909 1.14422 1.47597 1.25867 0.83271 0.74590 0.75898 0.75406 1.22359 1.22358 1.21146 0.92836 0.93224 0.93037 0.91877 0.90917 0.89448 0.91189 0.85811 0.86854 0.80998 0.87430 0.88717 0.88741 0.88876 0.88838 0.80539 0.91426 0.89688 0.90508 0.93080 0.79894 0.93527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.67 37.16 0.36 -1.75 16 2 C -0.11 -1.72 5.19 -26.73 -0.14 -1.86 16 3 C -0.10 -1.67 2.14 -90.50 -0.19 -1.86 16 4 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 5 C 0.12 2.00 5.03 -3.71 -0.02 1.98 16 6 N -0.60 -9.07 2.97 -172.77 -0.51 -9.58 16 7 C 0.50 7.69 7.73 -10.98 -0.08 7.61 16 8 O -0.52 -10.08 15.12 5.56 0.08 -9.99 16 9 C 0.12 1.34 5.34 -5.19 -0.03 1.31 16 10 N -0.36 -4.71 3.40 -62.54 -0.21 -4.93 16 11 C 0.06 0.65 11.36 -17.22 -0.20 0.46 16 12 C -0.21 -2.29 5.76 -105.05 -0.61 -2.89 16 13 C -0.07 -0.61 6.25 -91.77 -0.57 -1.18 16 14 C -0.18 -1.31 10.02 -26.73 -0.27 -1.58 16 15 C -0.18 -1.29 10.23 -26.73 -0.27 -1.56 16 16 C 0.04 0.55 11.35 -17.37 -0.20 0.35 16 17 N -0.26 -3.99 11.64 30.62 0.36 -3.63 16 18 C 0.11 1.59 6.08 -3.71 -0.02 1.56 16 19 C -0.15 -2.31 5.78 -26.61 -0.15 -2.46 16 20 C 0.18 3.31 2.53 -67.89 -0.17 3.13 16 21 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 22 N -0.73 -16.09 3.72 -53.39 -0.20 -16.29 16 23 C -0.33 -8.42 9.93 -15.06 -0.15 -8.57 16 24 H 0.06 1.62 7.83 -52.49 -0.41 1.21 16 25 C -0.04 -1.18 5.50 -17.43 -0.10 -1.28 16 26 N -0.94 -27.59 13.70 55.49 0.76 -26.83 16 27 Si 1.08 24.73 29.92 -169.99 -5.09 19.65 16 28 H -0.30 -6.48 7.11 56.52 0.40 -6.08 16 29 H -0.30 -6.57 7.11 56.52 0.40 -6.17 16 30 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 31 H 0.05 0.74 6.70 -51.93 -0.35 0.40 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.07 1.32 7.70 -51.93 -0.40 0.92 16 36 H 0.09 1.49 5.73 -51.93 -0.30 1.19 16 37 H 0.07 1.25 6.65 -51.93 -0.35 0.91 16 38 H 0.12 1.02 7.87 -51.93 -0.41 0.61 16 39 H 0.11 1.10 7.69 -51.93 -0.40 0.70 16 40 H 0.17 1.28 8.06 -52.49 -0.42 0.85 16 41 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.09 0.70 6.97 -51.93 -0.36 0.33 16 43 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.18 1.74 7.19 -52.49 -0.38 1.36 16 47 H 0.07 0.71 5.93 -51.93 -0.31 0.40 16 48 H 0.08 1.43 7.74 -51.93 -0.40 1.03 16 49 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 50 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 51 H 0.37 8.51 4.78 -40.82 -0.19 8.31 16 52 H 0.25 7.30 6.77 -40.82 -0.28 7.03 16 LS Contribution 408.80 15.07 6.16 6.16 Total: -1.00 -33.20 408.80 -9.86 -43.05 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -8.40 Total: 10.98 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -2.81 Total: -8.59 kcal Atomic # 7 Polarization: -61.45 SS G_CDS: 0.19 Total: -61.26 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.08 Total: -9.99 kcal Atomic # 14 Polarization: 24.73 SS G_CDS: -5.09 Total: 19.65 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.20 -9.86 -43.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037867581.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.931 kcal (2) G-P(sol) polarization free energy of solvation -33.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds