Wall clock time and date at job start Wed Apr 1 2020 05:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47492 * 2 1 4 4 H 1.09006 * 109.52016 * 55.07861 * 3 2 1 5 5 C 1.53189 * 109.49842 * 295.00227 * 3 2 1 6 6 N 1.46926 * 108.77454 * 185.40819 * 5 3 2 7 7 C 1.34774 * 120.63222 * 233.57973 * 6 5 3 8 8 O 1.21633 * 120.00000 * 354.71644 * 7 6 5 9 9 C 1.47159 * 120.00197 * 174.71020 * 7 6 5 10 10 C 1.38408 * 126.88342 * 268.89266 * 9 7 6 11 11 C 1.50700 * 127.32062 * 0.03646 * 10 9 7 12 12 C 1.52999 * 117.49992 * 188.62376 * 11 10 9 13 13 C 1.53001 * 117.50108 * 119.99868 * 11 10 9 14 14 C 1.39672 * 105.36017 * 179.91356 * 10 9 7 15 15 N 1.30869 * 107.86372 * 0.35354 * 14 10 9 16 16 N 1.28447 * 110.92067 * 359.77149 * 15 14 10 17 17 C 1.46499 * 125.18813 * 179.97438 * 16 15 14 18 18 C 1.46927 * 118.73795 * 53.61343 * 6 5 3 19 19 C 1.53201 * 108.77390 * 306.38354 * 18 6 5 20 20 C 1.53037 * 109.50106 * 175.15951 * 3 2 1 21 21 H 1.09003 * 109.46125 * 301.33904 * 20 3 2 22 22 N 1.46496 * 109.45882 * 61.29799 * 20 3 2 23 23 C 1.36946 * 120.00108 * 205.00183 * 22 20 3 24 24 H 1.07996 * 119.99644 * 359.97438 * 23 22 20 25 25 C 1.38809 * 119.99962 * 179.97438 * 23 22 20 26 26 N 1.31617 * 119.99779 * 179.97438 * 25 23 22 27 27 Si 1.86798 * 119.99935 * 0.02562 * 25 23 22 28 28 H 1.48505 * 109.47108 * 90.00012 * 27 25 23 29 29 H 1.48504 * 109.46756 * 209.99384 * 27 25 23 30 30 H 1.48495 * 109.47435 * 329.99415 * 27 25 23 31 31 H 1.09003 * 109.47032 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47248 * 299.99861 * 1 2 3 33 33 H 1.08998 * 109.46852 * 59.99783 * 1 2 3 34 34 H 1.08998 * 109.47248 * 240.00139 * 2 1 3 35 35 H 1.08998 * 109.47376 * 120.00201 * 2 1 3 36 36 H 1.09001 * 109.58350 * 305.19473 * 5 3 2 37 37 H 1.08998 * 109.58751 * 65.48067 * 5 3 2 38 38 H 1.09007 * 115.54769 * 334.32710 * 11 10 9 39 39 H 1.09000 * 117.49547 * 359.97438 * 12 11 10 40 40 H 1.09003 * 117.50166 * 145.01564 * 12 11 10 41 41 H 1.08999 * 117.49477 * 214.97731 * 13 11 10 42 42 H 1.08995 * 117.49858 * 359.97438 * 13 11 10 43 43 H 1.08000 * 126.06995 * 180.16377 * 14 10 9 44 44 H 1.09005 * 109.47351 * 274.96544 * 17 16 15 45 45 H 1.09002 * 109.47043 * 34.95754 * 17 16 15 46 46 H 1.08994 * 109.47121 * 154.96227 * 17 16 15 47 47 H 1.08999 * 109.58805 * 66.17134 * 18 6 5 48 48 H 1.08996 * 109.58518 * 186.45911 * 18 6 5 49 49 H 1.08992 * 109.49670 * 174.58697 * 19 18 6 50 50 H 1.09001 * 109.49533 * 294.65912 * 19 18 6 51 51 H 0.97003 * 119.99925 * 25.00170 * 22 20 3 52 52 H 0.97007 * 119.99912 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6070 1.9819 0.8424 5 6 1.6351 2.1280 -1.3087 6 7 2.2416 3.4656 -1.3492 7 6 1.4818 4.5579 -1.5636 8 8 0.2994 4.4352 -1.8213 9 6 2.0826 5.8990 -1.4860 10 6 2.1627 6.7099 -0.3672 11 6 1.6567 6.4062 1.0195 12 6 1.6811 7.5415 2.0448 13 6 2.6801 6.3880 2.1567 14 6 2.8149 7.8683 -0.7958 15 7 3.0804 7.7314 -2.0699 16 7 2.6677 6.5956 -2.5050 17 6 2.8031 6.1199 -3.8840 18 6 3.6923 3.5898 -1.1521 19 6 4.0742 2.8879 0.1550 20 6 3.5656 1.4449 0.1217 21 1 3.8574 0.9358 1.0404 22 7 4.1480 0.7484 -1.0280 23 6 5.3862 0.1725 -0.9245 24 1 5.9334 0.2322 0.0047 25 6 5.9378 -0.4878 -2.0137 26 7 7.1280 -1.0408 -1.9143 27 14 4.9915 -0.5902 -3.6210 28 1 5.3329 0.5781 -4.4718 29 1 5.3558 -1.8427 -4.3309 30 1 3.5337 -0.5876 -3.3383 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 1.9909 1.5397 -2.1546 37 1 0.5496 2.2151 -1.3549 38 1 0.8313 5.6962 1.0737 39 1 2.0636 8.5079 1.7165 40 1 0.8716 7.5788 2.7738 41 1 2.5276 5.6664 2.9593 42 1 3.7193 6.5952 1.9019 43 1 3.0544 8.7261 -0.1849 44 1 1.9725 6.4960 -4.4814 45 1 3.7433 6.4800 -4.3019 46 1 2.7943 5.0301 -3.8949 47 1 4.2157 3.1207 -1.9853 48 1 3.9645 4.6438 -1.0964 49 1 5.1586 2.8891 0.2651 50 1 3.6224 3.4141 0.9959 51 1 3.6566 0.6952 -1.8627 52 1 7.5136 -1.5020 -2.6756 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037867618.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:57:23 Heat of formation + Delta-G solvation = 83.373494 kcal Electronic energy + Delta-G solvation = -32768.177509 eV Core-core repulsion = 28770.664737 eV Total energy + Delta-G solvation = -3997.512772 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -42.68862 -40.07345 -37.97860 -37.36815 -34.66948 -33.93115 -33.26215 -31.85151 -31.03051 -29.92254 -28.81258 -27.27181 -25.65134 -24.07610 -23.68766 -23.26746 -22.54835 -22.12331 -20.91065 -20.18653 -19.52461 -18.47852 -18.00849 -17.51737 -16.72263 -15.93316 -15.80484 -15.63281 -15.12962 -14.78125 -14.51804 -14.38481 -14.29407 -13.87628 -13.58002 -13.49838 -13.30858 -13.14447 -13.04096 -12.90934 -12.57045 -12.51813 -12.12211 -12.00546 -11.70216 -11.65026 -11.34447 -11.18656 -11.10246 -11.01179 -10.90263 -10.80436 -10.48125 -10.44308 -10.40606 -10.27913 -10.05467 -9.91096 -9.61897 -9.23277 -9.01626 -8.59879 -8.53172 -7.34871 -5.84659 -3.20198 1.56366 2.02010 2.49158 2.63777 3.06897 3.27079 3.29245 3.37643 3.85352 4.21075 4.33161 4.49976 4.68556 4.75308 4.89392 4.89486 4.93840 5.01863 5.07183 5.11466 5.15505 5.18166 5.26493 5.34699 5.39182 5.46945 5.49775 5.51441 5.54389 5.59838 5.69478 5.73907 5.79534 5.81622 5.94760 5.98350 6.00045 6.09948 6.11370 6.20666 6.26962 6.33394 6.39455 6.43214 6.50203 6.60250 6.62201 6.70118 6.80612 7.35607 7.91611 7.95063 8.00793 8.34321 9.12221 9.84714 10.04229 11.33778 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010959 B = 0.004041 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2554.379360 B = 6926.977168 C = 7550.926483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.106 4.106 4 H 0.074 0.926 5 C 0.117 3.883 6 N -0.588 5.588 7 C 0.589 3.411 8 O -0.534 6.534 9 C -0.012 4.012 10 C -0.126 4.126 11 C -0.081 4.081 12 C -0.171 4.171 13 C -0.166 4.166 14 C 0.007 3.993 15 N -0.284 5.284 16 N -0.273 5.273 17 C 0.087 3.913 18 C 0.114 3.886 19 C -0.146 4.146 20 C 0.185 3.815 21 H 0.062 0.938 22 N -0.743 5.743 23 C -0.240 4.240 24 H 0.091 0.909 25 C 0.008 3.992 26 N -0.932 5.932 27 Si 0.876 3.124 28 H -0.286 1.286 29 H -0.291 1.291 30 H -0.278 1.278 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.109 0.891 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.183 0.817 44 H 0.086 0.914 45 H 0.100 0.900 46 H 0.092 0.908 47 H 0.080 0.920 48 H 0.071 0.929 49 H 0.079 0.921 50 H 0.056 0.944 51 H 0.359 0.641 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.346 14.547 4.167 18.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.149 4.149 3 C -0.126 4.126 4 H 0.092 0.908 5 C -0.005 4.005 6 N -0.319 5.319 7 C 0.374 3.626 8 O -0.410 6.410 9 C -0.140 4.140 10 C -0.137 4.137 11 C -0.100 4.100 12 C -0.208 4.208 13 C -0.203 4.203 14 C -0.170 4.170 15 N -0.114 5.114 16 N -0.061 5.061 17 C -0.053 4.053 18 C -0.008 4.008 19 C -0.187 4.187 20 C 0.075 3.925 21 H 0.080 0.920 22 N -0.387 5.387 23 C -0.370 4.370 24 H 0.109 0.891 25 C -0.188 4.188 26 N -0.580 5.580 27 Si 0.707 3.293 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.204 1.204 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.109 0.891 38 H 0.127 0.873 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.199 0.801 44 H 0.105 0.895 45 H 0.119 0.881 46 H 0.110 0.890 47 H 0.098 0.902 48 H 0.089 0.911 49 H 0.098 0.902 50 H 0.075 0.925 51 H 0.193 0.807 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.227 14.846 2.991 18.852 hybrid contribution -0.737 -0.524 -0.706 1.147 sum -11.965 14.322 2.285 18.801 Atomic orbital electron populations 1.21863 0.96589 1.01254 1.01466 1.21437 0.94499 0.95568 1.03440 1.21807 0.97562 0.96261 0.96957 0.90794 1.21778 0.99144 0.81087 0.98494 1.48152 1.08952 1.06083 1.68753 1.17076 0.85674 0.82395 0.77475 1.90814 1.15457 1.86185 1.48522 1.21176 1.06616 0.96129 0.90107 1.19711 1.05812 0.94699 0.93463 1.20143 1.01400 1.02569 0.85902 1.22961 1.02386 0.93939 1.01498 1.23017 0.96188 1.01290 0.99820 1.23307 1.03035 0.99565 0.91110 1.73143 1.20585 1.03510 1.14192 1.45499 1.40429 1.10926 1.09254 1.22189 1.04933 1.01125 0.77071 1.21756 0.78264 1.00533 1.00232 1.22466 1.02358 0.98520 0.95352 1.20200 0.89303 0.90730 0.92283 0.92027 1.42841 1.19598 1.65868 1.10413 1.19052 0.91803 1.26904 0.99272 0.89123 1.24625 0.96416 1.00279 0.97470 1.69686 1.16269 1.41243 1.30797 0.86691 0.79621 0.77489 0.85498 1.21257 1.21692 1.20397 0.92985 0.93063 0.92903 0.91059 0.91387 0.91235 0.89061 0.87320 0.88592 0.88542 0.88428 0.88458 0.80050 0.89542 0.88130 0.88958 0.90214 0.91052 0.90195 0.92516 0.80693 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.67 37.16 0.36 -1.49 16 2 C -0.11 -1.58 5.19 -26.73 -0.14 -1.72 16 3 C -0.11 -1.53 2.14 -90.50 -0.19 -1.72 16 4 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 5 C 0.12 1.74 5.01 -3.71 -0.02 1.72 16 6 N -0.59 -8.70 2.97 -174.13 -0.52 -9.22 16 7 C 0.59 9.13 6.71 -12.64 -0.08 9.04 16 8 O -0.53 -9.65 16.55 5.25 0.09 -9.56 16 9 C -0.01 -0.17 4.64 -82.06 -0.38 -0.55 16 10 C -0.13 -1.62 5.94 -104.02 -0.62 -2.24 16 11 C -0.08 -0.90 6.12 -91.77 -0.56 -1.46 16 12 C -0.17 -1.45 10.05 -26.73 -0.27 -1.72 16 13 C -0.17 -1.54 10.23 -26.73 -0.27 -1.82 16 14 C 0.01 0.09 11.41 -17.43 -0.20 -0.11 16 15 N -0.28 -3.80 11.90 30.59 0.36 -3.44 16 16 N -0.27 -3.61 3.75 -63.88 -0.24 -3.85 16 17 C 0.09 0.88 11.22 59.85 0.67 1.55 16 18 C 0.11 1.71 6.09 -3.71 -0.02 1.69 16 19 C -0.15 -2.24 5.78 -26.60 -0.15 -2.39 16 20 C 0.18 3.11 2.53 -67.89 -0.17 2.94 16 21 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 22 N -0.74 -15.44 3.52 -53.39 -0.19 -15.63 16 23 C -0.24 -6.17 10.41 -15.06 -0.16 -6.33 16 24 H 0.09 2.53 8.06 -52.49 -0.42 2.10 16 25 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 26 N -0.93 -27.99 13.97 55.49 0.78 -27.21 16 27 Si 0.88 20.93 27.74 -169.99 -4.71 16.21 16 28 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 29 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 30 H -0.28 -6.20 6.52 56.52 0.37 -5.83 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.63 6.69 -51.93 -0.35 0.28 16 34 H 0.07 1.16 7.69 -51.93 -0.40 0.76 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 1.12 6.64 -51.93 -0.34 0.77 16 37 H 0.09 1.36 5.76 -51.93 -0.30 1.06 16 38 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.10 0.72 7.12 -51.93 -0.37 0.35 16 40 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.18 1.62 7.34 -52.49 -0.39 1.23 16 44 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 46 H 0.09 0.94 7.65 -51.93 -0.40 0.55 16 47 H 0.08 1.34 7.74 -51.93 -0.40 0.94 16 48 H 0.07 1.03 6.32 -51.93 -0.33 0.70 16 49 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 50 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 51 H 0.36 7.50 3.80 -40.82 -0.16 7.35 16 52 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 408.69 15.07 6.16 6.16 Total: -1.00 -31.42 408.69 -9.09 -40.52 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: -8.51 Total: 10.49 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -2.31 Total: -4.47 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: 0.19 Total: -59.34 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.56 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.71 Total: 16.21 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -31.42 -9.09 -40.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037867618.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.893 kcal (2) G-P(sol) polarization free energy of solvation -31.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds