Wall clock time and date at job start Wed Apr 1 2020 05:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46898 * 2 1 4 4 H 1.09000 * 109.52770 * 54.92287 * 3 2 1 5 5 C 1.53194 * 109.49994 * 294.84047 * 3 2 1 6 6 N 1.46927 * 108.77445 * 185.41326 * 5 3 2 7 7 C 1.34777 * 120.63061 * 233.58435 * 6 5 3 8 8 O 1.21634 * 119.99770 * 354.79967 * 7 6 5 9 9 C 1.47165 * 120.00105 * 174.80419 * 7 6 5 10 10 C 1.38402 * 126.88335 * 99.69446 * 9 7 6 11 11 C 1.50694 * 127.32417 * 0.02562 * 10 9 7 12 12 C 1.52998 * 117.50262 * 188.61946 * 11 10 9 13 13 C 1.52999 * 60.00148 * 252.51540 * 12 11 10 14 14 C 1.39681 * 105.35440 * 180.02562 * 10 9 7 15 15 N 1.30853 * 107.86272 * 0.02562 * 14 10 9 16 16 N 1.28448 * 110.92781 * 359.71289 * 15 14 10 17 17 C 1.46508 * 125.18957 * 180.27904 * 16 15 14 18 18 C 1.46920 * 118.73833 * 53.61406 * 6 5 3 19 19 C 1.53191 * 108.76646 * 306.37857 * 18 6 5 20 20 C 1.53039 * 109.49846 * 175.00339 * 3 2 1 21 21 H 1.08999 * 109.46405 * 61.30708 * 20 3 2 22 22 N 1.46501 * 109.46174 * 301.33944 * 20 3 2 23 23 C 1.36932 * 120.00500 * 154.96899 * 22 20 3 24 24 H 1.08005 * 119.99837 * 0.02562 * 23 22 20 25 25 C 1.38809 * 120.00311 * 180.02562 * 23 22 20 26 26 N 1.31623 * 119.99866 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 120.00463 * 180.02562 * 25 23 22 28 28 H 1.48492 * 109.47632 * 180.02562 * 27 25 23 29 29 H 1.48501 * 109.46757 * 300.00040 * 27 25 23 30 30 H 1.48501 * 109.47143 * 59.99899 * 27 25 23 31 31 H 1.09003 * 109.46916 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46853 * 299.99617 * 1 2 3 33 33 H 1.09001 * 109.47163 * 60.00115 * 1 2 3 34 34 H 1.08998 * 109.46853 * 240.00383 * 2 1 3 35 35 H 1.08992 * 109.47694 * 120.00111 * 2 1 3 36 36 H 1.08997 * 109.58581 * 305.20148 * 5 3 2 37 37 H 1.08994 * 109.58734 * 65.62438 * 5 3 2 38 38 H 1.08996 * 115.55184 * 334.33152 * 11 10 9 39 39 H 1.09007 * 117.49827 * 0.02562 * 12 11 10 40 40 H 1.09001 * 117.50286 * 145.01904 * 12 11 10 41 41 H 1.09000 * 117.49219 * 252.50786 * 13 12 11 42 42 H 1.08998 * 117.49813 * 107.49322 * 13 12 11 43 43 H 1.08000 * 126.06749 * 179.97438 * 14 10 9 44 44 H 1.09000 * 109.47132 * 275.19579 * 17 16 15 45 45 H 1.08998 * 109.47101 * 35.19579 * 17 16 15 46 46 H 1.08998 * 109.46713 * 155.19508 * 17 16 15 47 47 H 1.08998 * 109.59557 * 66.17336 * 18 6 5 48 48 H 1.08998 * 109.58990 * 186.45930 * 18 6 5 49 49 H 1.09006 * 109.50984 * 294.70520 * 19 18 6 50 50 H 1.08996 * 109.49357 * 174.60546 * 19 18 6 51 51 H 0.97008 * 119.99641 * 334.97014 * 22 20 3 52 52 H 0.97000 * 120.00260 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9828 0.8407 5 6 1.6384 2.1268 -1.3105 6 7 2.2450 3.4645 -1.3506 7 6 1.4856 4.5565 -1.5680 8 8 0.3036 4.4336 -1.8270 9 6 2.0867 5.8977 -1.4921 10 6 2.4986 6.6847 -2.5535 11 6 2.4258 6.3503 -4.0211 12 6 3.1284 7.2963 -4.9969 13 6 1.6006 7.2768 -4.9165 14 6 2.9962 7.8547 -1.9751 15 7 2.8771 7.7428 -0.6768 16 7 2.3457 6.6171 -0.3602 17 6 2.0638 6.1712 1.0066 18 6 3.6951 3.5889 -1.1499 19 6 4.0734 2.8883 0.1589 20 6 3.5652 1.4451 0.1256 21 1 4.0008 0.9264 -0.7283 22 7 3.9543 0.7621 1.3619 23 6 5.1921 0.1859 1.4654 24 1 5.8819 0.2353 0.6358 25 6 5.5606 -0.4618 2.6366 26 7 4.7202 -0.5216 3.6479 27 14 7.2494 -1.2472 2.7781 28 1 7.3950 -1.8702 4.1181 29 1 7.4006 -2.2881 1.7298 30 1 8.2952 -0.2082 2.5985 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 1.9964 1.5378 -2.1549 37 1 0.5532 2.2161 -1.3585 38 1 2.4265 5.2873 -4.2616 39 1 3.6437 8.1604 -4.5773 40 1 3.5917 6.8557 -5.8797 41 1 1.0589 6.8232 -5.7465 42 1 1.1106 8.1281 -4.4441 43 1 3.4071 8.7011 -2.5053 44 1 2.9584 5.7164 1.4322 45 1 1.7670 7.0263 1.6138 46 1 1.2565 5.4391 0.9907 47 1 4.2208 3.1191 -1.9811 48 1 3.9673 4.6428 -1.0944 49 1 3.6187 3.4147 0.9982 50 1 5.1574 2.8898 0.2721 51 1 3.3349 0.7180 2.1072 52 1 4.9777 -0.9738 4.4664 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037867619.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:57:32 Heat of formation + Delta-G solvation = 77.072212 kcal Electronic energy + Delta-G solvation = -31993.253477 eV Core-core repulsion = 27995.467461 eV Total energy + Delta-G solvation = -3997.786016 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.70822 -40.00476 -37.84900 -37.40776 -34.83935 -33.87849 -33.24720 -31.83116 -31.05858 -29.60773 -28.69987 -27.23877 -25.47467 -24.02346 -23.78737 -23.12789 -22.55450 -21.89227 -20.89575 -20.22030 -19.75195 -19.10869 -17.71939 -17.14923 -16.71458 -15.95818 -15.83963 -15.64795 -15.04633 -14.87939 -14.48133 -14.35140 -14.06083 -13.89181 -13.66451 -13.41193 -13.19862 -13.08564 -13.01086 -12.92819 -12.65047 -12.24126 -12.13765 -11.93650 -11.71294 -11.70091 -11.38178 -11.15969 -10.98764 -10.92016 -10.83712 -10.78507 -10.49063 -10.46304 -10.30144 -10.23783 -10.10130 -9.80413 -9.68535 -9.24776 -8.96422 -8.65042 -8.62036 -7.04188 -5.84151 -3.13257 1.51370 2.02188 2.47087 2.66248 3.00220 3.38381 3.43615 3.44293 3.79611 4.20898 4.28379 4.51562 4.67758 4.70274 4.85697 4.92961 4.97027 5.03878 5.05941 5.12241 5.16878 5.24409 5.27378 5.36622 5.38155 5.45722 5.49940 5.53414 5.59105 5.61569 5.66510 5.75515 5.79377 5.92577 5.93605 6.03017 6.03931 6.06805 6.22452 6.24161 6.29550 6.35010 6.37812 6.44574 6.56649 6.61546 6.73363 6.86950 6.94566 7.28990 7.62238 7.93477 7.98142 8.33880 9.45623 10.01696 10.36627 11.38033 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012874 B = 0.003062 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.325597 B = 9142.229310 C = 9896.133034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.104 4.104 4 H 0.069 0.931 5 C 0.119 3.881 6 N -0.592 5.592 7 C 0.591 3.409 8 O -0.528 6.528 9 C -0.013 4.013 10 C -0.130 4.130 11 C -0.079 4.079 12 C -0.170 4.170 13 C -0.168 4.168 14 C 0.006 3.994 15 N -0.282 5.282 16 N -0.270 5.270 17 C 0.086 3.914 18 C 0.108 3.892 19 C -0.150 4.150 20 C 0.184 3.816 21 H 0.049 0.951 22 N -0.719 5.719 23 C -0.241 4.241 24 H 0.069 0.931 25 C -0.010 4.010 26 N -0.932 5.932 27 Si 0.905 3.095 28 H -0.291 1.291 29 H -0.286 1.286 30 H -0.286 1.286 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.058 0.942 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.182 0.818 44 H 0.092 0.908 45 H 0.098 0.902 46 H 0.092 0.908 47 H 0.071 0.929 48 H 0.073 0.927 49 H 0.057 0.943 50 H 0.077 0.923 51 H 0.384 0.616 52 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.141 13.442 -13.220 19.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.150 4.150 3 C -0.124 4.124 4 H 0.088 0.912 5 C -0.003 4.003 6 N -0.325 5.325 7 C 0.375 3.625 8 O -0.403 6.403 9 C -0.142 4.142 10 C -0.140 4.140 11 C -0.098 4.098 12 C -0.207 4.207 13 C -0.206 4.206 14 C -0.171 4.171 15 N -0.113 5.113 16 N -0.058 5.058 17 C -0.055 4.055 18 C -0.015 4.015 19 C -0.191 4.191 20 C 0.073 3.927 21 H 0.067 0.933 22 N -0.359 5.359 23 C -0.372 4.372 24 H 0.087 0.913 25 C -0.206 4.206 26 N -0.580 5.580 27 Si 0.736 3.264 28 H -0.217 1.217 29 H -0.213 1.213 30 H -0.213 1.213 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.110 0.890 38 H 0.126 0.874 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.199 0.801 44 H 0.110 0.890 45 H 0.117 0.883 46 H 0.111 0.889 47 H 0.090 0.910 48 H 0.092 0.908 49 H 0.076 0.924 50 H 0.096 0.904 51 H 0.218 0.782 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.436 13.769 -12.153 19.460 hybrid contribution 0.803 -0.807 -0.173 1.152 sum -5.632 12.962 -12.326 18.753 Atomic orbital electron populations 1.21850 0.96756 1.01170 1.01275 1.21450 0.94397 0.95488 1.03632 1.21790 0.97746 0.96415 0.96416 0.91238 1.21856 0.99418 0.80834 0.98239 1.48159 1.08793 1.06475 1.69024 1.17074 0.85507 0.82423 0.77494 1.90822 1.15248 1.86208 1.48000 1.21179 1.09077 0.96113 0.87801 1.19722 1.06262 0.94886 0.93154 1.20119 1.05982 0.97146 0.86595 1.22978 0.95092 1.01760 1.00898 1.22995 0.93778 1.02035 1.01743 1.23301 1.05158 0.99407 0.89269 1.73152 1.16119 1.04389 1.17615 1.45537 1.42575 1.10960 1.06699 1.22247 1.03659 1.01997 0.77550 1.21888 0.78927 1.01216 0.99515 1.22703 1.02394 0.99317 0.94693 1.20182 0.90690 0.90426 0.91387 0.93272 1.42385 1.16478 1.64443 1.12617 1.19157 0.91787 1.27583 0.98652 0.91290 1.24716 0.98112 1.01413 0.96408 1.69642 1.35296 1.48276 1.04750 0.86309 0.84123 0.79207 0.76778 1.21739 1.21261 1.21309 0.93072 0.93008 0.93197 0.92333 0.89666 0.91178 0.88966 0.87368 0.88494 0.88447 0.88553 0.88633 0.80080 0.88975 0.88315 0.88906 0.91021 0.90815 0.92442 0.90419 0.78195 0.93431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.67 37.16 0.36 -1.62 16 2 C -0.11 -1.69 5.31 -26.73 -0.14 -1.83 16 3 C -0.10 -1.56 1.92 -90.50 -0.17 -1.74 16 4 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 5 C 0.12 1.61 5.31 -3.71 -0.02 1.59 16 6 N -0.59 -8.06 2.97 -174.14 -0.52 -8.58 16 7 C 0.59 8.74 6.71 -12.64 -0.08 8.65 16 8 O -0.53 -9.26 16.54 5.25 0.09 -9.18 16 9 C -0.01 -0.18 4.65 -82.06 -0.38 -0.56 16 10 C -0.13 -1.61 5.94 -104.03 -0.62 -2.22 16 11 C -0.08 -0.84 6.12 -91.77 -0.56 -1.40 16 12 C -0.17 -1.35 10.05 -26.73 -0.27 -1.62 16 13 C -0.17 -1.50 10.23 -26.73 -0.27 -1.78 16 14 C 0.01 0.07 11.41 -17.43 -0.20 -0.13 16 15 N -0.28 -3.71 11.90 30.59 0.36 -3.35 16 16 N -0.27 -3.49 3.74 -63.88 -0.24 -3.73 16 17 C 0.09 0.89 11.22 59.85 0.67 1.56 16 18 C 0.11 1.41 6.35 -3.71 -0.02 1.39 16 19 C -0.15 -2.35 5.66 -26.61 -0.15 -2.50 16 20 C 0.18 3.23 2.19 -67.89 -0.15 3.08 16 21 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 22 N -0.72 -16.28 4.33 -53.39 -0.23 -16.51 16 23 C -0.24 -6.20 9.93 -15.06 -0.15 -6.35 16 24 H 0.07 1.73 7.83 -52.48 -0.41 1.32 16 25 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 26 N -0.93 -26.81 13.06 55.49 0.72 -26.09 16 27 Si 0.90 21.53 29.55 -169.99 -5.02 16.51 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 29 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 30 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.59 6.70 -51.93 -0.35 0.25 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.08 1.56 7.22 -51.93 -0.37 1.19 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.09 1.29 5.76 -51.93 -0.30 1.00 16 38 H 0.11 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.10 0.68 7.12 -51.92 -0.37 0.31 16 40 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.18 1.55 7.34 -52.49 -0.39 1.16 16 44 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 45 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.09 0.97 7.65 -51.93 -0.40 0.57 16 47 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.07 0.96 6.31 -51.93 -0.33 0.63 16 49 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 50 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 51 H 0.38 9.41 7.51 -40.82 -0.31 9.11 16 52 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 415.41 15.07 6.26 6.26 Total: -1.00 -30.78 415.41 -9.53 -40.30 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: -8.69 Total: 10.21 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -2.26 Total: -5.85 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: 0.10 Total: -58.26 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.09 Total: -9.18 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -30.78 -9.53 -40.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037867619.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.377 kcal (2) G-P(sol) polarization free energy of solvation -30.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds