Wall clock time and date at job start Wed Apr 1 2020 05:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47150 * 2 1 4 4 H 1.09005 * 109.49991 * 305.06430 * 3 2 1 5 5 C 1.53630 * 109.43169 * 65.28324 * 3 2 1 6 6 N 1.46925 * 108.54229 * 174.72788 * 5 3 2 7 7 C 1.34777 * 120.63239 * 126.37192 * 6 5 3 8 8 O 1.21625 * 119.99854 * 4.95552 * 7 6 5 9 9 C 1.47157 * 120.00129 * 184.95466 * 7 6 5 10 10 C 1.38404 * 126.88370 * 93.72609 * 9 7 6 11 11 C 1.50706 * 127.32118 * 359.97211 * 10 9 7 12 12 C 1.52996 * 117.49894 * 188.95240 * 11 10 9 13 13 C 1.52996 * 60.00199 * 252.50970 * 12 11 10 14 14 C 1.39676 * 105.36213 * 180.26435 * 10 9 7 15 15 N 1.30864 * 107.85807 * 359.74041 * 14 10 9 16 16 N 1.28446 * 110.92597 * 0.02562 * 15 14 10 17 17 C 1.46500 * 125.18795 * 179.97438 * 16 15 14 18 18 C 1.46928 * 118.73906 * 306.09396 * 6 5 3 19 19 C 1.53188 * 108.77278 * 53.86343 * 18 6 5 20 20 C 1.53040 * 109.50149 * 184.99897 * 3 2 1 21 21 H 1.08994 * 109.44667 * 58.66932 * 20 3 2 22 22 N 1.46502 * 109.45592 * 298.69984 * 20 3 2 23 23 C 1.36937 * 119.99533 * 154.92744 * 22 20 3 24 24 H 1.08002 * 120.00510 * 0.02562 * 23 22 20 25 25 C 1.38812 * 120.00055 * 179.97438 * 23 22 20 26 26 N 1.31627 * 119.99844 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00474 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47007 * 59.99769 * 27 25 23 29 29 H 1.48491 * 109.47450 * 180.02562 * 27 25 23 30 30 H 1.48507 * 109.46836 * 300.00661 * 27 25 23 31 31 H 1.09002 * 109.46485 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47664 * 299.99957 * 1 2 3 33 33 H 1.09002 * 109.46932 * 60.00285 * 1 2 3 34 34 H 1.08995 * 109.47664 * 240.00043 * 2 1 3 35 35 H 1.09000 * 109.47447 * 119.99703 * 2 1 3 36 36 H 1.09003 * 109.73829 * 54.99447 * 5 3 2 37 37 H 1.08995 * 109.66440 * 294.42368 * 5 3 2 38 38 H 1.08995 * 115.54645 * 334.65752 * 11 10 9 39 39 H 1.09007 * 117.50157 * 359.97438 * 12 11 10 40 40 H 1.09001 * 117.50138 * 145.02092 * 12 11 10 41 41 H 1.08998 * 117.49993 * 252.51167 * 13 12 11 42 42 H 1.08998 * 117.51883 * 107.47685 * 13 12 11 43 43 H 1.07999 * 126.07573 * 179.76324 * 14 10 9 44 44 H 1.09004 * 109.46800 * 85.38136 * 17 16 15 45 45 H 1.09003 * 109.47671 * 325.38642 * 17 16 15 46 46 H 1.09001 * 109.47491 * 205.38118 * 17 16 15 47 47 H 1.08998 * 109.58932 * 173.64687 * 18 6 5 48 48 H 1.08997 * 109.58752 * 294.07570 * 18 6 5 49 49 H 1.08994 * 109.50076 * 65.31840 * 19 18 6 50 50 H 1.09011 * 109.49821 * 185.38325 * 19 18 6 51 51 H 0.96993 * 120.00378 * 334.93495 * 22 20 3 52 52 H 0.96995 * 119.99663 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9823 -0.8410 5 6 1.6392 2.1263 1.3161 6 7 2.2449 3.4644 1.3506 7 6 1.4856 4.5565 1.5681 8 8 0.3036 4.4336 1.8273 9 6 2.0865 5.8976 1.4918 10 6 2.1209 6.7309 0.3873 11 6 1.5546 6.4568 -0.9821 12 6 1.8989 7.4435 -2.0995 13 6 0.4872 7.4172 -1.5104 14 6 2.7980 7.8773 0.8096 15 7 3.1215 7.7121 2.0668 16 7 2.7198 6.5707 2.4977 17 6 2.9162 6.0652 3.8586 18 6 3.6951 3.5889 1.1499 19 6 4.0735 2.8883 -0.1588 20 6 3.5652 1.4451 -0.1257 21 1 3.8544 0.9371 -1.0456 22 7 4.1506 0.7477 1.0220 23 6 5.3879 0.1708 0.9142 24 1 5.9322 0.2302 -0.0167 25 6 5.9429 -0.4896 2.0017 26 7 5.2797 -0.5617 3.1364 27 14 7.6309 -1.2761 1.8550 28 1 8.6344 -0.2348 1.5172 29 1 7.9938 -1.9138 3.1459 30 1 7.6061 -2.3052 0.7846 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 2.0007 1.5397 2.1607 37 1 0.5541 2.2149 1.3678 38 1 1.4620 5.4044 -1.2504 39 1 2.5348 8.2913 -1.8441 40 1 2.0330 7.0404 -3.1033 41 1 -0.3075 6.9967 -2.1266 42 1 0.1942 8.2470 -0.8674 43 1 3.0157 8.7460 0.2059 44 1 2.1148 6.4303 4.5010 45 1 3.8756 6.4141 4.2410 46 1 2.9045 4.9754 3.8468 47 1 3.9668 4.6429 1.0918 48 1 4.2207 3.1191 1.9811 49 1 3.6192 3.4149 -0.9980 50 1 5.1577 2.8900 -0.2721 51 1 3.6619 0.6945 1.8581 52 1 5.6677 -1.0228 3.8964 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037867621.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:57:45 Heat of formation + Delta-G solvation = 79.115901 kcal Electronic energy + Delta-G solvation = -32518.545559 eV Core-core repulsion = 28520.848164 eV Total energy + Delta-G solvation = -3997.697395 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 5.37 seconds Orbital eigenvalues (eV) -42.61336 -39.91403 -37.80844 -37.32598 -34.52228 -33.79889 -33.18097 -31.76961 -30.93941 -29.48415 -28.49452 -27.18493 -25.45976 -23.94633 -23.61813 -23.54734 -22.52219 -22.05497 -20.82246 -20.11881 -19.39819 -18.43186 -17.58649 -17.30819 -16.58928 -15.84563 -15.73315 -15.53938 -14.99226 -14.59914 -14.54797 -14.31960 -14.03514 -13.92118 -13.48990 -13.32841 -13.23835 -13.01094 -12.94745 -12.80511 -12.58064 -12.28732 -12.06666 -11.82969 -11.63203 -11.46966 -11.15106 -11.06532 -11.01133 -10.85242 -10.78246 -10.73304 -10.39973 -10.37717 -10.32944 -10.24833 -9.92928 -9.85070 -9.60271 -9.15451 -8.96853 -8.53698 -8.37531 -7.03128 -5.84176 -3.12586 1.64136 2.12865 2.55332 2.75420 3.19649 3.38489 3.44056 3.44572 3.88859 4.29609 4.42779 4.53170 4.76188 4.79091 4.94788 4.99288 5.05117 5.12504 5.17247 5.20762 5.28528 5.28940 5.44303 5.47436 5.50123 5.53727 5.53913 5.63810 5.71575 5.75640 5.76773 5.83979 5.87177 6.01063 6.01735 6.09023 6.12200 6.14862 6.27011 6.32908 6.37568 6.43078 6.50852 6.55116 6.65317 6.68889 6.71758 6.87981 6.93536 7.50168 7.63876 8.02265 8.14243 8.34364 9.46217 10.01995 10.37198 11.38091 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011078 B = 0.003668 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.032066 B = 7631.007404 C = 8489.530795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.110 4.110 3 C -0.102 4.102 4 H 0.067 0.933 5 C 0.118 3.882 6 N -0.586 5.586 7 C 0.587 3.413 8 O -0.533 6.533 9 C -0.008 4.008 10 C -0.129 4.129 11 C -0.078 4.078 12 C -0.170 4.170 13 C -0.169 4.169 14 C 0.006 3.994 15 N -0.285 5.285 16 N -0.273 5.273 17 C 0.087 3.913 18 C 0.116 3.884 19 C -0.147 4.147 20 C 0.178 3.822 21 H 0.052 0.948 22 N -0.718 5.718 23 C -0.238 4.238 24 H 0.069 0.931 25 C -0.010 4.010 26 N -0.933 5.933 27 Si 0.904 3.096 28 H -0.287 1.287 29 H -0.292 1.292 30 H -0.287 1.287 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.109 0.891 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.182 0.818 44 H 0.086 0.914 45 H 0.100 0.900 46 H 0.094 0.906 47 H 0.067 0.933 48 H 0.086 0.914 49 H 0.050 0.950 50 H 0.074 0.926 51 H 0.383 0.617 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.728 13.416 -6.165 16.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.122 4.122 4 H 0.086 0.914 5 C -0.004 4.004 6 N -0.317 5.317 7 C 0.371 3.629 8 O -0.409 6.409 9 C -0.137 4.137 10 C -0.140 4.140 11 C -0.097 4.097 12 C -0.207 4.207 13 C -0.207 4.207 14 C -0.171 4.171 15 N -0.116 5.116 16 N -0.061 5.061 17 C -0.054 4.054 18 C -0.007 4.007 19 C -0.188 4.188 20 C 0.068 3.932 21 H 0.070 0.930 22 N -0.360 5.360 23 C -0.369 4.369 24 H 0.087 0.913 25 C -0.206 4.206 26 N -0.581 5.581 27 Si 0.735 3.265 28 H -0.214 1.214 29 H -0.218 1.218 30 H -0.213 1.213 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.127 0.873 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.114 0.886 42 H 0.113 0.887 43 H 0.199 0.801 44 H 0.104 0.896 45 H 0.118 0.882 46 H 0.113 0.887 47 H 0.085 0.915 48 H 0.104 0.896 49 H 0.069 0.931 50 H 0.093 0.907 51 H 0.218 0.782 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.623 13.703 -4.958 16.446 hybrid contribution 0.656 -0.820 -0.345 1.105 sum -6.967 12.884 -5.303 15.577 Atomic orbital electron populations 1.21857 0.96780 1.01106 1.01350 1.21418 0.94285 0.95622 1.03474 1.21834 0.97461 0.96205 0.96725 0.91435 1.21888 0.98831 0.80929 0.98711 1.48149 1.08923 1.06157 1.68519 1.17071 0.85721 0.82362 0.77712 1.90807 1.15481 1.86114 1.48532 1.21225 1.05521 0.96415 0.90525 1.19693 1.05724 0.94724 0.93825 1.20124 1.03055 0.96942 0.89588 1.22965 0.98624 1.01555 0.97517 1.22992 0.92308 1.01969 1.03400 1.23285 1.02510 0.99777 0.91543 1.73129 1.21090 1.03041 1.14307 1.45517 1.39122 1.11008 1.10411 1.22209 1.04606 1.00894 0.77661 1.21742 0.78513 1.00101 1.00313 1.22501 1.01900 0.99116 0.95301 1.20234 0.89653 0.90603 0.92731 0.92967 1.42457 1.19127 1.63961 1.10501 1.19170 0.93630 1.27064 0.97064 0.91310 1.24683 0.98505 1.01405 0.96002 1.69633 1.38183 1.48080 1.02211 0.86325 0.84366 0.79218 0.76594 1.21380 1.21809 1.21339 0.93110 0.92811 0.93342 0.91921 0.90444 0.90283 0.89383 0.87284 0.88559 0.88452 0.88599 0.88709 0.80138 0.89597 0.88167 0.88698 0.91486 0.89590 0.93120 0.90711 0.78156 0.93489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.68 37.16 0.36 -1.62 16 2 C -0.11 -1.67 5.19 -26.73 -0.14 -1.81 16 3 C -0.10 -1.57 2.15 -90.27 -0.19 -1.77 16 4 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 5 C 0.12 1.89 5.04 -3.48 -0.02 1.87 16 6 N -0.59 -9.21 2.97 -173.87 -0.52 -9.72 16 7 C 0.59 9.61 6.71 -12.64 -0.08 9.53 16 8 O -0.53 -10.15 16.54 5.26 0.09 -10.06 16 9 C -0.01 -0.12 4.64 -82.07 -0.38 -0.50 16 10 C -0.13 -1.74 5.94 -104.02 -0.62 -2.36 16 11 C -0.08 -0.92 6.12 -91.77 -0.56 -1.48 16 12 C -0.17 -1.52 10.05 -26.74 -0.27 -1.79 16 13 C -0.17 -1.67 10.23 -26.73 -0.27 -1.94 16 14 C 0.01 0.08 11.41 -17.43 -0.20 -0.12 16 15 N -0.29 -3.97 11.90 30.59 0.36 -3.61 16 16 N -0.27 -3.78 3.75 -63.88 -0.24 -4.02 16 17 C 0.09 0.94 11.21 59.85 0.67 1.61 16 18 C 0.12 1.84 6.09 -3.71 -0.02 1.81 16 19 C -0.15 -2.37 5.78 -26.61 -0.15 -2.53 16 20 C 0.18 3.16 2.53 -67.89 -0.17 2.99 16 21 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 22 N -0.72 -15.75 3.72 -53.38 -0.20 -15.94 16 23 C -0.24 -6.01 9.93 -15.06 -0.15 -6.16 16 24 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 25 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 26 N -0.93 -26.26 13.06 55.49 0.72 -25.54 16 27 Si 0.90 21.34 29.55 -169.99 -5.02 16.32 16 28 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 29 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 30 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.70 6.70 -51.93 -0.35 0.35 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.08 1.37 7.70 -51.93 -0.40 0.97 16 36 H 0.08 1.39 6.63 -51.93 -0.34 1.05 16 37 H 0.09 1.41 5.76 -51.93 -0.30 1.11 16 38 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 39 H 0.10 0.77 7.12 -51.92 -0.37 0.40 16 40 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.18 1.69 7.34 -52.49 -0.39 1.31 16 44 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 46 H 0.09 1.07 7.65 -51.93 -0.40 0.67 16 47 H 0.07 1.02 6.32 -51.93 -0.33 0.69 16 48 H 0.09 1.57 7.74 -51.93 -0.40 1.17 16 49 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.07 1.29 8.14 -51.92 -0.42 0.87 16 51 H 0.38 9.00 5.93 -40.82 -0.24 8.76 16 52 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 411.84 15.07 6.21 6.21 Total: -1.00 -30.01 411.84 -9.45 -39.46 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: -8.55 Total: 11.53 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -2.30 Total: -4.63 kcal Atomic # 7 Polarization: -58.96 SS G_CDS: 0.13 Total: -58.83 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -30.01 -9.45 -39.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037867621.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.580 kcal (2) G-P(sol) polarization free energy of solvation -30.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.37 seconds