Wall clock time and date at job start Wed Apr 1 2020 05:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47150 * 2 1 4 4 H 1.09005 * 109.49991 * 305.06430 * 3 2 1 5 5 C 1.53630 * 109.43169 * 65.28324 * 3 2 1 6 6 N 1.46925 * 108.54229 * 174.72788 * 5 3 2 7 7 C 1.34777 * 120.63239 * 126.37192 * 6 5 3 8 8 O 1.21625 * 119.99854 * 4.95552 * 7 6 5 9 9 C 1.47157 * 120.00129 * 184.95466 * 7 6 5 10 10 C 1.38404 * 126.88370 * 93.72609 * 9 7 6 11 11 C 1.50706 * 127.32118 * 359.97211 * 10 9 7 12 12 C 1.52996 * 117.49894 * 188.95240 * 11 10 9 13 13 C 1.52996 * 60.00199 * 252.50970 * 12 11 10 14 14 C 1.39676 * 105.36213 * 180.26435 * 10 9 7 15 15 N 1.30864 * 107.85807 * 359.74041 * 14 10 9 16 16 N 1.28446 * 110.92597 * 0.02562 * 15 14 10 17 17 C 1.46500 * 125.18795 * 179.97438 * 16 15 14 18 18 C 1.46928 * 118.73906 * 306.09396 * 6 5 3 19 19 C 1.53188 * 108.77278 * 53.86343 * 18 6 5 20 20 C 1.53040 * 109.50149 * 184.99897 * 3 2 1 21 21 H 1.08994 * 109.44667 * 58.66932 * 20 3 2 22 22 N 1.46502 * 109.45592 * 298.69984 * 20 3 2 23 23 C 1.36937 * 119.99533 * 154.92744 * 22 20 3 24 24 H 1.08002 * 120.00510 * 0.02562 * 23 22 20 25 25 C 1.38812 * 120.00055 * 179.97438 * 23 22 20 26 26 N 1.31627 * 119.99844 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00474 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47007 * 59.99769 * 27 25 23 29 29 H 1.48491 * 109.47450 * 180.02562 * 27 25 23 30 30 H 1.48507 * 109.46836 * 300.00661 * 27 25 23 31 31 H 1.09002 * 109.46485 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47664 * 299.99957 * 1 2 3 33 33 H 1.09002 * 109.46932 * 60.00285 * 1 2 3 34 34 H 1.08995 * 109.47664 * 240.00043 * 2 1 3 35 35 H 1.09000 * 109.47447 * 119.99703 * 2 1 3 36 36 H 1.09003 * 109.73829 * 54.99447 * 5 3 2 37 37 H 1.08995 * 109.66440 * 294.42368 * 5 3 2 38 38 H 1.08995 * 115.54645 * 334.65752 * 11 10 9 39 39 H 1.09007 * 117.50157 * 359.97438 * 12 11 10 40 40 H 1.09001 * 117.50138 * 145.02092 * 12 11 10 41 41 H 1.08998 * 117.49993 * 252.51167 * 13 12 11 42 42 H 1.08998 * 117.51883 * 107.47685 * 13 12 11 43 43 H 1.07999 * 126.07573 * 179.76324 * 14 10 9 44 44 H 1.09004 * 109.46800 * 85.38136 * 17 16 15 45 45 H 1.09003 * 109.47671 * 325.38642 * 17 16 15 46 46 H 1.09001 * 109.47491 * 205.38118 * 17 16 15 47 47 H 1.08998 * 109.58932 * 173.64687 * 18 6 5 48 48 H 1.08997 * 109.58752 * 294.07570 * 18 6 5 49 49 H 1.08994 * 109.50076 * 65.31840 * 19 18 6 50 50 H 1.09011 * 109.49821 * 185.38325 * 19 18 6 51 51 H 0.96993 * 120.00378 * 334.93495 * 22 20 3 52 52 H 0.96995 * 119.99663 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9823 -0.8410 5 6 1.6392 2.1263 1.3161 6 7 2.2449 3.4644 1.3506 7 6 1.4856 4.5565 1.5681 8 8 0.3036 4.4336 1.8273 9 6 2.0865 5.8976 1.4918 10 6 2.1209 6.7309 0.3873 11 6 1.5546 6.4568 -0.9821 12 6 1.8989 7.4435 -2.0995 13 6 0.4872 7.4172 -1.5104 14 6 2.7980 7.8773 0.8096 15 7 3.1215 7.7121 2.0668 16 7 2.7198 6.5707 2.4977 17 6 2.9162 6.0652 3.8586 18 6 3.6951 3.5889 1.1499 19 6 4.0735 2.8883 -0.1588 20 6 3.5652 1.4451 -0.1257 21 1 3.8544 0.9371 -1.0456 22 7 4.1506 0.7477 1.0220 23 6 5.3879 0.1708 0.9142 24 1 5.9322 0.2302 -0.0167 25 6 5.9429 -0.4896 2.0017 26 7 5.2797 -0.5617 3.1364 27 14 7.6309 -1.2761 1.8550 28 1 8.6344 -0.2348 1.5172 29 1 7.9938 -1.9138 3.1459 30 1 7.6061 -2.3052 0.7846 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 2.0007 1.5397 2.1607 37 1 0.5541 2.2149 1.3678 38 1 1.4620 5.4044 -1.2504 39 1 2.5348 8.2913 -1.8441 40 1 2.0330 7.0404 -3.1033 41 1 -0.3075 6.9967 -2.1266 42 1 0.1942 8.2470 -0.8674 43 1 3.0157 8.7460 0.2059 44 1 2.1148 6.4303 4.5010 45 1 3.8756 6.4141 4.2410 46 1 2.9045 4.9754 3.8468 47 1 3.9668 4.6429 1.0918 48 1 4.2207 3.1191 1.9811 49 1 3.6192 3.4149 -0.9980 50 1 5.1577 2.8900 -0.2721 51 1 3.6619 0.6945 1.8581 52 1 5.6677 -1.0228 3.8964 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037867621.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:57:40 Heat of formation + Delta-G solvation = 63.381515 kcal Electronic energy + Delta-G solvation = -32519.227853 eV Core-core repulsion = 28520.848164 eV Total energy + Delta-G solvation = -3998.379689 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 7.65 seconds Orbital eigenvalues (eV) -43.63834 -41.25541 -39.21610 -38.12878 -35.97670 -35.35969 -34.12185 -33.44186 -32.02747 -31.06487 -29.87627 -28.12105 -26.83154 -25.51356 -25.12655 -24.56692 -23.41705 -23.05526 -22.12432 -21.06527 -20.57964 -19.76481 -19.26003 -18.75050 -17.80131 -16.89580 -16.84969 -16.64060 -16.46572 -15.99701 -15.91292 -15.58399 -15.34267 -15.13872 -14.81866 -14.60904 -14.59430 -14.20571 -14.09247 -13.88077 -13.71646 -13.64258 -13.14031 -12.98698 -12.93329 -12.81656 -12.65751 -12.41066 -12.29787 -12.20926 -12.14278 -11.98648 -11.85872 -11.64147 -11.60341 -11.45878 -11.28019 -11.20414 -11.13739 -10.82707 -10.18339 -9.76284 -9.50701 -8.91683 -7.87860 -5.13622 0.57011 0.98105 1.50643 1.51108 1.56745 1.58247 1.61360 1.97895 2.60394 3.10095 3.21211 3.42504 3.45954 3.75070 3.83154 3.90680 3.97404 3.99232 4.04546 4.14556 4.17058 4.20870 4.28010 4.29933 4.31611 4.41521 4.44667 4.45419 4.50807 4.55512 4.65731 4.77849 4.85175 4.85826 4.91110 4.99063 5.01563 5.09403 5.15034 5.18609 5.23613 5.24240 5.29343 5.34163 5.39387 5.48116 5.50172 5.59618 5.63878 5.71239 6.18883 6.33831 6.83353 7.01446 7.42094 8.17337 8.41372 9.34945 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011078 B = 0.003668 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.032066 B = 7631.007404 C = 8489.530795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.105 4.105 3 C -0.090 4.090 4 H 0.087 0.913 5 C 0.124 3.876 6 N -0.582 5.582 7 C 0.595 3.405 8 O -0.564 6.564 9 C -0.038 4.038 10 C -0.124 4.124 11 C -0.106 4.106 12 C -0.147 4.147 13 C -0.166 4.166 14 C 0.007 3.993 15 N -0.297 5.297 16 N -0.278 5.278 17 C 0.080 3.920 18 C 0.130 3.870 19 C -0.138 4.138 20 C 0.174 3.826 21 H 0.051 0.949 22 N -0.723 5.723 23 C -0.227 4.227 24 H 0.074 0.926 25 C -0.068 4.068 26 N -0.967 5.967 27 Si 0.960 3.040 28 H -0.281 1.281 29 H -0.303 1.303 30 H -0.283 1.283 31 H 0.059 0.941 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.046 0.954 36 H 0.057 0.943 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.103 0.897 42 H 0.094 0.906 43 H 0.213 0.787 44 H 0.099 0.901 45 H 0.117 0.883 46 H 0.084 0.916 47 H 0.077 0.923 48 H 0.058 0.942 49 H 0.075 0.925 50 H 0.065 0.935 51 H 0.374 0.626 52 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.810 15.209 -8.415 19.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.143 4.143 3 C -0.110 4.110 4 H 0.106 0.894 5 C 0.002 3.998 6 N -0.312 5.312 7 C 0.381 3.619 8 O -0.442 6.442 9 C -0.167 4.167 10 C -0.135 4.135 11 C -0.125 4.125 12 C -0.184 4.184 13 C -0.204 4.204 14 C -0.170 4.170 15 N -0.127 5.127 16 N -0.066 5.066 17 C -0.059 4.059 18 C 0.007 3.993 19 C -0.179 4.179 20 C 0.065 3.935 21 H 0.069 0.931 22 N -0.364 5.364 23 C -0.359 4.359 24 H 0.092 0.908 25 C -0.261 4.261 26 N -0.618 5.618 27 Si 0.791 3.209 28 H -0.208 1.208 29 H -0.229 1.229 30 H -0.209 1.209 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.108 0.892 38 H 0.115 0.885 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.122 0.878 42 H 0.113 0.887 43 H 0.229 0.771 44 H 0.117 0.883 45 H 0.136 0.864 46 H 0.103 0.897 47 H 0.095 0.905 48 H 0.076 0.924 49 H 0.093 0.907 50 H 0.084 0.916 51 H 0.208 0.792 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -7.699 15.514 -7.255 18.778 hybrid contribution 0.629 -1.317 0.289 1.488 sum -7.069 14.197 -6.967 17.322 Atomic orbital electron populations 1.21793 0.94724 1.01974 1.01919 1.21337 0.96059 0.94962 1.01946 1.21742 0.95737 0.96615 0.96909 0.89446 1.21769 0.98816 0.80937 0.98293 1.48105 1.08770 1.06069 1.68273 1.17217 0.85228 0.82917 0.76585 1.90780 1.16835 1.86669 1.49906 1.21151 1.07462 0.96195 0.91864 1.20017 1.04859 0.94493 0.94138 1.20164 1.05521 0.97073 0.89774 1.23088 0.97812 1.00491 0.97009 1.23054 0.92959 1.01103 1.03235 1.23803 1.01599 1.00348 0.91243 1.73122 1.21412 1.03027 1.15145 1.45721 1.39027 1.10937 1.10888 1.22383 1.06144 1.00348 0.77039 1.21524 0.78275 1.00331 0.99150 1.22373 1.01392 0.97970 0.96158 1.20434 0.91073 0.91010 0.90978 0.93109 1.42551 1.18301 1.64168 1.11356 1.19509 0.94382 1.25284 0.96726 0.90806 1.25314 1.01533 1.03134 0.96101 1.69782 1.39513 1.49755 1.02738 0.85414 0.81205 0.78436 0.75887 1.20788 1.22929 1.20903 0.92181 0.93171 0.91756 0.91782 0.93557 0.92498 0.89151 0.88532 0.87131 0.87088 0.87831 0.88709 0.77070 0.88298 0.86432 0.89749 0.90451 0.92359 0.90691 0.91621 0.79249 0.94420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.68 71.98 0.70 -2.91 16 2 C -0.10 -3.14 5.19 30.59 0.16 -2.98 16 3 C -0.09 -2.71 2.15 -10.57 -0.02 -2.74 16 4 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 5 C 0.12 4.01 5.04 86.51 0.44 4.44 16 6 N -0.58 -18.32 2.97 -822.25 -2.44 -20.76 16 7 C 0.59 19.45 6.71 86.58 0.58 20.03 16 8 O -0.56 -21.60 16.54 -4.11 -0.07 -21.67 16 9 C -0.04 -1.12 4.64 40.79 0.19 -0.93 16 10 C -0.12 -3.15 5.94 -19.48 -0.12 -3.26 16 11 C -0.11 -2.27 6.12 -11.54 -0.07 -2.34 16 12 C -0.15 -2.13 10.05 30.59 0.31 -1.82 16 13 C -0.17 -2.84 10.23 30.59 0.31 -2.53 16 14 C 0.01 0.16 11.41 85.18 0.97 1.13 16 15 N -0.30 -7.78 11.90 -57.14 -0.68 -8.46 16 16 N -0.28 -7.47 3.75 -356.02 -1.33 -8.81 16 17 C 0.08 1.73 11.21 127.77 1.43 3.17 16 18 C 0.13 4.11 6.09 86.36 0.53 4.63 16 19 C -0.14 -4.31 5.78 30.67 0.18 -4.13 16 20 C 0.17 6.06 2.53 45.02 0.11 6.17 16 21 H 0.05 1.81 8.08 -2.39 -0.02 1.79 16 22 N -0.72 -32.18 3.72 -322.81 -1.20 -33.38 16 23 C -0.23 -11.51 9.93 84.03 0.83 -10.67 16 24 H 0.07 3.62 7.83 -2.91 -0.02 3.60 16 25 C -0.07 -3.69 5.50 84.86 0.47 -3.22 16 26 N -0.97 -56.02 13.06 21.65 0.28 -55.74 16 27 Si 0.96 44.35 29.55 68.60 2.03 46.37 16 28 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 29 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 30 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 31 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.05 1.26 6.70 -2.39 -0.02 1.25 16 33 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.05 1.68 7.70 -2.39 -0.02 1.66 16 36 H 0.06 2.11 6.63 -2.39 -0.02 2.09 16 37 H 0.09 2.91 5.76 -2.39 -0.01 2.89 16 38 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.11 1.29 7.12 -2.38 -0.02 1.28 16 40 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.21 3.19 7.34 -2.91 -0.02 3.17 16 44 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 45 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 46 H 0.08 1.97 7.65 -2.39 -0.02 1.95 16 47 H 0.08 2.32 6.32 -2.39 -0.02 2.30 16 48 H 0.06 2.20 7.74 -2.39 -0.02 2.18 16 49 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 50 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 51 H 0.37 18.21 5.93 -92.71 -0.55 17.66 16 52 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -65.01 411.84 3.95 -61.05 By element: Atomic # 1 Polarization: 38.96 SS G_CDS: 0.37 Total: 39.33 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: 7.00 Total: 2.04 kcal Atomic # 7 Polarization: -121.76 SS G_CDS: -5.37 Total: -127.13 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.07 Total: -21.67 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Total: -65.01 3.95 -61.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037867621.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.436 kcal (2) G-P(sol) polarization free energy of solvation -65.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.65 seconds