Wall clock time and date at job start Wed Apr 1 2020 05:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46993 * 2 1 4 4 H 1.09004 * 109.49999 * 305.06719 * 3 2 1 5 5 C 1.53198 * 109.52498 * 65.14836 * 3 2 1 6 6 N 1.46926 * 108.77800 * 174.60257 * 5 3 2 7 7 C 1.34781 * 120.62813 * 126.41085 * 6 5 3 8 8 O 1.21621 * 120.00170 * 354.86900 * 7 6 5 9 9 C 1.47158 * 119.99700 * 174.86498 * 7 6 5 10 10 C 1.38404 * 126.88403 * 99.56662 * 9 7 6 11 11 C 1.50703 * 127.31728 * 0.04023 * 10 9 7 12 12 C 1.53001 * 117.49643 * 188.74548 * 11 10 9 13 13 C 1.53004 * 117.49808 * 120.08569 * 11 10 9 14 14 C 1.39675 * 105.35859 * 179.91708 * 10 9 7 15 15 N 1.30858 * 107.86561 * 0.35622 * 14 10 9 16 16 N 1.28451 * 110.92598 * 359.77017 * 15 14 10 17 17 C 1.46495 * 125.19206 * 179.97438 * 16 15 14 18 18 C 1.46917 * 118.73789 * 306.38879 * 6 5 3 19 19 C 1.53199 * 108.77600 * 53.60994 * 18 6 5 20 20 C 1.53035 * 109.31238 * 305.36617 * 19 18 6 21 21 H 1.09005 * 109.44590 * 301.34818 * 20 19 18 22 22 N 1.46500 * 109.46248 * 181.38376 * 20 19 18 23 23 C 1.36938 * 119.99975 * 84.92955 * 22 20 19 24 24 H 1.08003 * 120.00020 * 359.97438 * 23 22 20 25 25 C 1.38817 * 120.00249 * 180.02562 * 23 22 20 26 26 N 1.31615 * 120.00241 * 179.97438 * 25 23 22 27 27 Si 1.86794 * 119.99680 * 359.97438 * 25 23 22 28 28 H 1.48503 * 109.47014 * 90.00115 * 27 25 23 29 29 H 1.48497 * 109.47384 * 330.00606 * 27 25 23 30 30 H 1.48496 * 109.47192 * 210.00302 * 27 25 23 31 31 H 1.09000 * 109.47362 * 59.99588 * 1 2 3 32 32 H 1.09002 * 109.47190 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47173 * 299.99778 * 1 2 3 34 34 H 1.09003 * 109.47228 * 240.00769 * 2 1 3 35 35 H 1.08992 * 109.47597 * 120.00194 * 2 1 3 36 36 H 1.09001 * 109.58121 * 294.39090 * 5 3 2 37 37 H 1.08997 * 109.58422 * 54.80822 * 5 3 2 38 38 H 1.08997 * 115.55044 * 334.41285 * 11 10 9 39 39 H 1.09002 * 117.50157 * 359.97438 * 12 11 10 40 40 H 1.08999 * 117.50041 * 145.02306 * 12 11 10 41 41 H 1.08993 * 117.49576 * 214.97908 * 13 11 10 42 42 H 1.08999 * 117.49913 * 359.97438 * 13 11 10 43 43 H 1.07998 * 126.06354 * 180.09597 * 14 10 9 44 44 H 1.08999 * 109.47324 * 275.01064 * 17 16 15 45 45 H 1.09005 * 109.47018 * 35.00865 * 17 16 15 46 46 H 1.09002 * 109.46924 * 155.00986 * 17 16 15 47 47 H 1.09000 * 109.58701 * 173.39700 * 18 6 5 48 48 H 1.09001 * 109.59117 * 293.68362 * 18 6 5 49 49 H 1.08998 * 109.49792 * 185.40735 * 19 18 6 50 50 H 1.09002 * 109.49290 * 65.31546 * 19 18 6 51 51 H 0.97000 * 119.99944 * 264.93525 * 22 20 19 52 52 H 0.96994 * 119.99850 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6046 1.9823 -0.8410 5 6 1.6385 2.1275 1.3102 6 7 2.2449 3.4652 1.3497 7 6 1.4855 4.5573 1.5665 8 8 0.2759 4.4523 1.6388 9 6 2.1198 5.8767 1.7160 10 6 2.2343 6.8580 0.7466 11 6 1.7376 6.8002 -0.6750 12 6 2.1618 7.9280 -1.6179 13 6 0.7192 7.8555 -1.1110 14 6 2.9054 7.9142 1.3669 15 7 3.1626 7.5578 2.5995 16 7 2.7189 6.3761 2.8375 17 6 2.8378 5.6712 4.1162 18 6 3.6950 3.5896 1.1488 19 6 4.0735 2.8882 -0.1596 20 6 3.5651 1.4452 -0.1258 21 1 4.0009 0.9269 0.7285 22 7 3.9541 0.7615 -1.3617 23 6 5.1922 0.1858 -1.4652 24 1 5.8822 0.2361 -0.6358 25 6 5.5610 -0.4616 -2.6365 26 7 6.7512 -1.0145 -2.7362 27 14 4.3680 -0.5479 -4.0712 28 1 4.5678 0.6303 -4.9528 29 1 2.9748 -0.5507 -3.5571 30 1 4.6128 -1.7919 -4.8444 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5137 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 0.5532 2.2167 1.3581 37 1 1.9964 1.5388 2.1548 38 1 1.6391 5.8006 -1.0983 39 1 2.7997 8.7120 -1.2099 40 1 2.3419 7.6705 -2.6616 41 1 -0.0491 7.5503 -1.8214 42 1 0.4081 8.5914 -0.3695 43 1 3.1693 8.8561 0.9091 44 1 3.8046 5.1704 4.1665 45 1 2.7563 6.3868 4.9344 46 1 2.0410 4.9321 4.1990 47 1 3.9667 4.6435 1.0902 48 1 4.2207 3.1224 1.9815 49 1 5.1576 2.8896 -0.2727 50 1 3.6190 3.4145 -0.9991 51 1 3.3346 0.7167 -2.1068 52 1 7.0087 -1.4671 -3.5545 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037867622.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:58:01 Heat of formation + Delta-G solvation = 81.582937 kcal Electronic energy + Delta-G solvation = -32129.610259 eV Core-core repulsion = 28132.019842 eV Total energy + Delta-G solvation = -3997.590416 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 5.07 seconds Orbital eigenvalues (eV) -42.75581 -40.08172 -37.93603 -37.37232 -34.95608 -33.96642 -33.34406 -31.86409 -31.12021 -29.97971 -28.91715 -27.34818 -25.60183 -24.10896 -23.75747 -22.97813 -22.48788 -21.81933 -20.90560 -20.23934 -19.95265 -19.14514 -17.91015 -17.48150 -16.75982 -16.02332 -15.82344 -15.70104 -15.18371 -14.83858 -14.53429 -14.41247 -14.26371 -13.85158 -13.58005 -13.51429 -13.36544 -13.15739 -13.02605 -12.93648 -12.76015 -12.43608 -12.14930 -12.04441 -11.90685 -11.65873 -11.49564 -11.15698 -11.08303 -11.07089 -10.85792 -10.82735 -10.51315 -10.45870 -10.39191 -10.26112 -10.14153 -9.81912 -9.62708 -9.30431 -8.98277 -8.71018 -8.65396 -7.32756 -5.82533 -3.18264 1.45767 1.96105 2.43522 2.54565 2.96711 3.33119 3.36488 3.42120 3.84352 4.14440 4.23452 4.54134 4.62183 4.74008 4.78444 4.86477 4.90020 4.95089 5.02315 5.04797 5.06104 5.11377 5.14981 5.28046 5.32638 5.40440 5.45622 5.49692 5.51964 5.54566 5.67830 5.70637 5.79876 5.84644 5.92408 5.97314 5.99333 6.02242 6.08262 6.17033 6.19779 6.27109 6.30812 6.36928 6.47549 6.55225 6.65153 6.72574 6.87697 7.22456 7.86903 7.92059 7.92672 8.36470 9.14532 9.87305 10.06952 11.35722 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011194 B = 0.003416 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.781441 B = 8195.607501 C = 8718.441626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.108 4.108 4 H 0.070 0.930 5 C 0.119 3.881 6 N -0.594 5.594 7 C 0.592 3.408 8 O -0.527 6.527 9 C -0.016 4.016 10 C -0.122 4.122 11 C -0.082 4.082 12 C -0.169 4.169 13 C -0.168 4.168 14 C 0.008 3.992 15 N -0.283 5.283 16 N -0.275 5.275 17 C 0.088 3.912 18 C 0.108 3.892 19 C -0.149 4.149 20 C 0.189 3.811 21 H 0.057 0.943 22 N -0.744 5.744 23 C -0.244 4.244 24 H 0.090 0.910 25 C 0.008 3.992 26 N -0.933 5.933 27 Si 0.881 3.119 28 H -0.285 1.285 29 H -0.276 1.276 30 H -0.291 1.291 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.110 0.890 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.183 0.817 44 H 0.088 0.912 45 H 0.098 0.902 46 H 0.091 0.909 47 H 0.076 0.924 48 H 0.069 0.931 49 H 0.082 0.918 50 H 0.060 0.940 51 H 0.361 0.639 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.776 14.887 10.710 21.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.128 4.128 4 H 0.089 0.911 5 C -0.003 4.003 6 N -0.326 5.326 7 C 0.376 3.624 8 O -0.402 6.402 9 C -0.144 4.144 10 C -0.133 4.133 11 C -0.101 4.101 12 C -0.206 4.206 13 C -0.205 4.205 14 C -0.169 4.169 15 N -0.113 5.113 16 N -0.063 5.063 17 C -0.052 4.052 18 C -0.015 4.015 19 C -0.190 4.190 20 C 0.079 3.921 21 H 0.075 0.925 22 N -0.386 5.386 23 C -0.373 4.373 24 H 0.108 0.892 25 C -0.188 4.188 26 N -0.580 5.580 27 Si 0.712 3.288 28 H -0.211 1.211 29 H -0.203 1.203 30 H -0.218 1.218 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.112 0.888 37 H 0.090 0.910 38 H 0.128 0.872 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.115 0.885 42 H 0.113 0.887 43 H 0.200 0.800 44 H 0.106 0.894 45 H 0.116 0.884 46 H 0.110 0.890 47 H 0.095 0.905 48 H 0.087 0.913 49 H 0.101 0.899 50 H 0.079 0.921 51 H 0.194 0.806 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.661 14.978 11.955 21.930 hybrid contribution -0.884 -0.368 -1.890 2.119 sum -11.545 14.610 10.065 21.167 Atomic orbital electron populations 1.21855 0.96582 1.01229 1.01454 1.21466 0.94572 0.95556 1.03535 1.21834 0.97699 0.96372 0.96927 0.91115 1.21830 0.99600 0.80816 0.98067 1.48184 1.08849 1.06352 1.69235 1.17064 0.86050 0.82048 0.77243 1.90821 1.13321 1.85262 1.50766 1.21167 1.06429 0.97308 0.89488 1.19755 1.05175 0.93660 0.94667 1.20158 1.04029 0.95985 0.89941 1.22993 0.97808 1.00515 0.99251 1.23002 0.92617 1.01572 1.03324 1.23326 1.02825 1.00584 0.90211 1.73141 1.20144 0.98363 1.19687 1.45489 1.39599 1.10918 1.10293 1.22170 1.04343 0.97292 0.81429 1.21882 0.78759 1.01446 0.99419 1.22628 1.02752 0.98626 0.94994 1.20155 0.90591 0.90605 0.90745 0.92515 1.42758 1.16475 1.66238 1.13107 1.19036 0.90374 1.27444 1.00486 0.89227 1.24643 0.96369 1.00188 0.97643 1.69690 1.19285 1.41504 1.27558 0.86608 0.81145 0.77369 0.83725 1.21139 1.20266 1.21775 0.93036 0.92996 0.92971 0.90319 0.91901 0.88817 0.91011 0.87232 0.88496 0.88306 0.88536 0.88680 0.79983 0.89362 0.88362 0.89035 0.90526 0.91256 0.89942 0.92093 0.80576 0.93033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.67 37.16 0.36 -1.53 16 2 C -0.11 -1.63 5.31 -26.73 -0.14 -1.77 16 3 C -0.11 -1.58 1.92 -90.50 -0.17 -1.76 16 4 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 5 C 0.12 1.52 5.34 -3.71 -0.02 1.50 16 6 N -0.59 -7.69 2.97 -174.14 -0.52 -8.21 16 7 C 0.59 8.39 6.71 -12.64 -0.08 8.31 16 8 O -0.53 -8.96 16.52 5.26 0.09 -8.87 16 9 C -0.02 -0.20 4.66 -82.06 -0.38 -0.59 16 10 C -0.12 -1.53 5.94 -104.02 -0.62 -2.15 16 11 C -0.08 -0.95 6.12 -91.77 -0.56 -1.51 16 12 C -0.17 -1.55 10.06 -26.69 -0.27 -1.82 16 13 C -0.17 -1.64 10.24 -26.69 -0.27 -1.92 16 14 C 0.01 0.09 11.41 -17.43 -0.20 -0.11 16 15 N -0.28 -3.48 11.90 30.59 0.36 -3.11 16 16 N -0.27 -3.20 3.75 -63.88 -0.24 -3.44 16 17 C 0.09 0.69 11.22 59.84 0.67 1.36 16 18 C 0.11 1.36 6.32 -3.71 -0.02 1.34 16 19 C -0.15 -2.33 5.66 -26.61 -0.15 -2.48 16 20 C 0.19 3.25 2.19 -67.89 -0.15 3.10 16 21 H 0.06 1.01 8.08 -51.93 -0.42 0.60 16 22 N -0.74 -16.19 4.13 -53.38 -0.22 -16.42 16 23 C -0.24 -6.44 10.41 -15.06 -0.16 -6.60 16 24 H 0.09 2.55 8.06 -52.48 -0.42 2.12 16 25 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 26 N -0.93 -28.41 13.97 55.49 0.78 -27.64 16 27 Si 0.88 21.45 27.73 -169.99 -4.71 16.74 16 28 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 29 H -0.28 -6.30 6.52 56.52 0.37 -5.93 16 30 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.58 6.70 -51.93 -0.35 0.24 16 34 H 0.08 1.34 7.21 -51.93 -0.37 0.97 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.09 1.25 5.72 -51.93 -0.30 0.95 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.11 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.10 0.77 7.13 -51.93 -0.37 0.40 16 40 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.18 1.56 7.34 -52.49 -0.39 1.17 16 44 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.09 0.69 7.65 -51.93 -0.40 0.29 16 47 H 0.08 0.97 6.38 -51.93 -0.33 0.63 16 48 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 49 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 50 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 51 H 0.36 7.93 5.37 -40.82 -0.22 7.71 16 52 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 412.33 15.07 6.21 6.21 Total: -1.00 -32.57 412.33 -9.17 -41.74 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -8.65 Total: 9.49 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -2.27 Total: -6.49 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: 0.16 Total: -58.82 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.09 Total: -8.87 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.71 Total: 16.74 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -32.57 -9.17 -41.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037867622.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.328 kcal (2) G-P(sol) polarization free energy of solvation -32.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.07 seconds