Wall clock time and date at job start Wed Apr 1 2020 05:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47126 * 2 1 4 4 H 1.09000 * 109.49606 * 55.06231 * 3 2 1 5 5 C 1.53194 * 109.49931 * 294.99943 * 3 2 1 6 6 N 1.46926 * 108.77404 * 185.41740 * 5 3 2 7 7 C 1.34777 * 120.62490 * 233.63066 * 6 5 3 8 8 O 1.21573 * 120.00397 * 353.98786 * 7 6 5 9 9 C 1.47715 * 119.99669 * 173.99222 * 7 6 5 10 10 C 1.41641 * 126.49373 * 173.24034 * 9 7 6 11 11 C 1.34707 * 105.33448 * 179.83081 * 10 9 7 12 12 N 1.35513 * 107.70728 * 0.45306 * 11 10 9 13 13 N 1.28416 * 109.71937 * 359.67682 * 12 11 10 14 14 C 1.47001 * 123.89834 * 179.67822 * 12 11 10 15 15 C 1.53178 * 108.87445 * 342.27072 * 14 12 11 16 16 C 1.53155 * 109.57790 * 51.16819 * 15 14 12 17 17 C 1.50790 * 127.54073 * 180.15708 * 11 10 9 18 18 C 1.46920 * 118.74307 * 53.60672 * 6 5 3 19 19 C 1.53195 * 108.77285 * 306.39071 * 18 6 5 20 20 C 1.53037 * 109.49702 * 175.15855 * 3 2 1 21 21 H 1.09004 * 109.46237 * 301.34236 * 20 3 2 22 22 N 1.46499 * 109.45793 * 61.29594 * 20 3 2 23 23 C 1.36935 * 120.00202 * 205.00076 * 22 20 3 24 24 H 1.08005 * 120.00337 * 0.02562 * 23 22 20 25 25 C 1.38817 * 120.00122 * 179.97438 * 23 22 20 26 26 N 1.31615 * 119.99906 * 0.02562 * 25 23 22 27 27 Si 1.86805 * 119.99977 * 179.97438 * 25 23 22 28 28 H 1.48506 * 109.46597 * 60.00280 * 27 25 23 29 29 H 1.48497 * 109.47304 * 179.97438 * 27 25 23 30 30 H 1.48497 * 109.47074 * 300.00598 * 27 25 23 31 31 H 1.08997 * 109.47368 * 300.00083 * 1 2 3 32 32 H 1.08998 * 109.47219 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47056 * 59.99533 * 1 2 3 34 34 H 1.09002 * 109.46765 * 120.00011 * 2 1 3 35 35 H 1.08999 * 109.46645 * 239.99760 * 2 1 3 36 36 H 1.09001 * 109.58331 * 305.20275 * 5 3 2 37 37 H 1.09003 * 109.58242 * 65.48416 * 5 3 2 38 38 H 1.07997 * 127.33244 * 359.95899 * 10 9 7 39 39 H 1.09009 * 109.56300 * 102.18656 * 14 12 11 40 40 H 1.08996 * 109.56588 * 222.54199 * 14 12 11 41 41 H 1.09004 * 109.48818 * 291.12620 * 15 14 12 42 42 H 1.08998 * 109.41626 * 171.17562 * 15 14 12 43 43 H 1.08994 * 109.54316 * 170.50611 * 16 15 14 44 44 H 1.09007 * 109.60884 * 50.29131 * 16 15 14 45 45 H 1.08999 * 109.72143 * 284.47147 * 17 11 10 46 46 H 1.09010 * 109.71563 * 45.07409 * 17 11 10 47 47 H 1.09004 * 109.58773 * 66.17618 * 18 6 5 48 48 H 1.09000 * 109.58814 * 186.60435 * 18 6 5 49 49 H 1.09004 * 109.49787 * 174.58196 * 19 18 6 50 50 H 1.08992 * 109.50075 * 294.68220 * 19 18 6 51 51 H 0.97000 * 120.00105 * 25.00248 * 22 20 3 52 52 H 0.97000 * 119.99449 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9816 0.8423 5 6 1.6351 2.1280 -1.3088 6 7 2.2417 3.4656 -1.3493 7 6 1.4816 4.5580 -1.5628 8 8 0.3026 4.4350 -1.8324 9 6 2.0813 5.9047 -1.4693 10 6 1.4523 7.1313 -1.7946 11 6 2.3757 8.0811 -1.5498 12 7 3.4987 7.4612 -1.1128 13 7 3.3056 6.1923 -1.0727 14 6 4.7355 8.1669 -0.7477 15 6 4.6972 9.5761 -1.3469 16 6 3.3776 10.2574 -0.9724 17 6 2.2291 9.5717 -1.7241 18 6 3.6923 3.5898 -1.1522 19 6 4.0741 2.8879 0.1549 20 6 3.5656 1.4449 0.1218 21 1 3.8574 0.9358 1.0404 22 7 4.1480 0.7484 -1.0280 23 6 5.3860 0.1725 -0.9244 24 1 5.9330 0.2314 0.0050 25 6 5.9377 -0.4879 -2.0137 26 7 5.2709 -0.5601 -3.1462 27 14 7.6269 -1.2728 -1.8727 28 1 7.6067 -2.3017 -0.8019 29 1 7.9858 -1.9108 -3.1647 30 1 8.6307 -0.2306 -1.5389 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.8933 -0.5139 -0.8900 36 1 1.9908 1.5397 -2.1546 37 1 0.5496 2.2151 -1.3549 38 1 0.4459 7.2748 -2.1591 39 1 4.8118 8.2320 0.3378 40 1 5.5949 7.6262 -1.1441 41 1 4.7773 9.5122 -2.4321 42 1 5.5307 10.1592 -0.9552 43 1 3.4188 11.3102 -1.2514 44 1 3.2133 10.1710 0.1018 45 1 2.2797 9.8250 -2.7830 46 1 1.2734 9.8978 -1.3133 47 1 4.2158 3.1207 -1.9853 48 1 3.9642 4.6438 -1.0939 49 1 5.1586 2.8890 0.2651 50 1 3.6220 3.4137 0.9958 51 1 3.6566 0.6952 -1.8626 52 1 5.6566 -1.0213 -3.9074 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037869691.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:54:10 Heat of formation + Delta-G solvation = 54.853946 kcal Electronic energy + Delta-G solvation = -31888.945744 eV Core-core repulsion = 27890.196271 eV Total energy + Delta-G solvation = -3998.749472 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.86700 -39.71437 -37.65674 -36.84245 -34.27798 -33.65784 -33.24521 -31.58597 -30.67912 -29.23913 -28.86570 -28.34069 -25.63735 -24.49409 -23.63654 -23.44185 -22.72428 -22.11769 -20.66353 -19.98207 -19.05923 -18.02950 -17.32741 -17.00100 -16.69533 -15.98950 -15.64823 -15.05767 -14.79338 -14.58575 -14.46270 -14.29276 -14.18672 -13.92390 -13.64986 -13.53419 -13.21632 -13.17444 -12.96916 -12.79964 -12.43120 -12.21278 -12.09455 -11.81750 -11.57885 -11.47292 -11.41263 -11.29166 -11.08444 -10.96624 -10.79076 -10.67768 -10.31915 -10.20100 -10.13798 -9.91677 -9.68461 -9.50595 -9.40904 -9.07232 -8.97294 -8.78984 -8.02484 -6.88821 -5.72206 -2.99789 1.66519 2.12656 2.29755 3.44273 3.45349 3.50253 3.50993 3.68178 3.97268 4.18044 4.25502 4.36036 4.62857 4.67186 4.79424 4.92910 5.00743 5.16994 5.21543 5.27001 5.32096 5.38905 5.40010 5.47334 5.50216 5.63862 5.65025 5.67790 5.73810 5.79984 5.81828 5.91166 5.95469 5.99994 6.04127 6.22228 6.29179 6.30518 6.43260 6.48734 6.53939 6.60192 6.67407 6.76047 6.82152 6.90246 6.98482 7.07699 7.22763 7.73903 7.82844 8.03962 8.46562 8.55282 9.57752 10.16271 10.51583 11.50356 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011191 B = 0.003264 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.422816 B = 8575.760570 C =10366.552148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.102 4.102 4 H 0.065 0.935 5 C 0.120 3.880 6 N -0.586 5.586 7 C 0.597 3.403 8 O -0.549 6.549 9 C -0.003 4.003 10 C -0.178 4.178 11 C 0.011 3.989 12 N -0.287 5.287 13 N -0.251 5.251 14 C 0.119 3.881 15 C -0.136 4.136 16 C -0.127 4.127 17 C -0.051 4.051 18 C 0.083 3.917 19 C -0.142 4.142 20 C 0.177 3.823 21 H 0.048 0.952 22 N -0.718 5.718 23 C -0.234 4.234 24 H 0.068 0.932 25 C -0.013 4.013 26 N -0.933 5.933 27 Si 0.904 3.096 28 H -0.287 1.287 29 H -0.293 1.293 30 H -0.288 1.288 31 H 0.047 0.953 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.160 0.840 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.078 0.922 42 H 0.094 0.906 43 H 0.080 0.920 44 H 0.070 0.930 45 H 0.086 0.914 46 H 0.090 0.910 47 H 0.075 0.925 48 H 0.123 0.877 49 H 0.069 0.931 50 H 0.044 0.956 51 H 0.384 0.616 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.796 22.066 5.582 23.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.122 4.122 4 H 0.083 0.917 5 C -0.003 4.003 6 N -0.316 5.316 7 C 0.383 3.617 8 O -0.426 6.426 9 C -0.163 4.163 10 C -0.205 4.205 11 C -0.113 4.113 12 N -0.075 5.075 13 N -0.085 5.085 14 C -0.001 4.001 15 C -0.174 4.174 16 C -0.165 4.165 17 C -0.090 4.090 18 C -0.039 4.039 19 C -0.184 4.184 20 C 0.067 3.933 21 H 0.066 0.934 22 N -0.360 5.360 23 C -0.366 4.366 24 H 0.086 0.914 25 C -0.209 4.209 26 N -0.581 5.581 27 Si 0.735 3.265 28 H -0.214 1.214 29 H -0.219 1.219 30 H -0.215 1.215 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.178 0.822 39 H 0.111 0.889 40 H 0.120 0.880 41 H 0.097 0.903 42 H 0.112 0.888 43 H 0.098 0.902 44 H 0.089 0.911 45 H 0.104 0.896 46 H 0.109 0.891 47 H 0.093 0.907 48 H 0.140 0.860 49 H 0.088 0.912 50 H 0.063 0.937 51 H 0.219 0.781 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.128 21.471 5.891 22.644 hybrid contribution 0.395 -0.273 -0.474 0.675 sum -3.733 21.198 5.417 22.196 Atomic orbital electron populations 1.21858 0.96859 1.00970 1.01377 1.21416 0.94236 0.95787 1.03318 1.21740 0.97482 0.96010 0.96999 0.91669 1.21706 0.98629 0.81602 0.98324 1.47957 1.09190 1.05883 1.68599 1.17002 0.85294 0.82079 0.77285 1.90734 1.15672 1.86045 1.50184 1.22034 0.91409 0.95361 1.07507 1.21262 1.01164 0.89898 1.08218 1.21242 0.88104 0.96391 1.05572 1.45999 1.11557 1.03548 1.46395 1.73280 1.18502 0.96019 1.20696 1.22151 0.83800 0.92424 1.01694 1.21942 0.99375 0.93722 1.02393 1.21689 0.93702 1.00074 1.00991 1.20331 0.99981 0.86854 1.01793 1.22603 0.78140 1.04285 0.98916 1.22431 1.01314 0.98662 0.95953 1.20249 0.89729 0.90949 0.92364 0.93393 1.42459 1.18968 1.63976 1.10643 1.19178 0.93653 1.26733 0.96991 0.91398 1.24689 0.98471 1.01654 0.96062 1.69643 1.38087 1.48190 1.02229 0.86324 0.84527 0.79160 0.76488 1.21434 1.21860 1.21465 0.93413 0.93208 0.92724 0.92090 0.90484 0.90713 0.89661 0.82228 0.88942 0.87988 0.90327 0.88783 0.90175 0.91083 0.89575 0.89149 0.90659 0.85998 0.91193 0.93688 0.78108 0.93567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.67 37.16 0.36 -1.85 16 2 C -0.11 -1.86 5.19 -26.73 -0.14 -2.00 16 3 C -0.10 -1.81 2.14 -90.50 -0.19 -2.00 16 4 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 5 C 0.12 2.22 5.01 -3.71 -0.02 2.20 16 6 N -0.59 -10.99 2.97 -173.93 -0.52 -11.51 16 7 C 0.60 11.33 7.69 -12.39 -0.10 11.23 16 8 O -0.55 -11.44 16.38 5.30 0.09 -11.35 16 9 C 0.00 -0.05 6.88 -82.69 -0.57 -0.62 16 10 C -0.18 -2.44 10.76 -39.53 -0.43 -2.87 16 11 C 0.01 0.12 6.57 -82.17 -0.54 -0.42 16 12 N -0.29 -3.37 3.74 -56.69 -0.21 -3.58 16 13 N -0.25 -3.81 8.42 33.46 0.28 -3.52 16 14 C 0.12 0.89 7.18 -3.68 -0.03 0.86 16 15 C -0.14 -0.65 5.92 -26.56 -0.16 -0.81 16 16 C -0.13 -0.59 5.98 -26.42 -0.16 -0.75 16 17 C -0.05 -0.33 6.28 -27.61 -0.17 -0.51 16 18 C 0.08 1.56 6.07 -3.71 -0.02 1.54 16 19 C -0.14 -2.64 5.78 -26.61 -0.15 -2.79 16 20 C 0.18 3.53 2.53 -67.89 -0.17 3.36 16 21 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 22 N -0.72 -17.28 3.72 -53.38 -0.20 -17.48 16 23 C -0.23 -6.30 9.93 -15.06 -0.15 -6.45 16 24 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 25 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 26 N -0.93 -27.80 13.06 55.49 0.72 -27.07 16 27 Si 0.90 22.25 29.55 -169.99 -5.02 17.23 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 29 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 30 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.79 6.69 -51.93 -0.35 0.45 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.08 1.50 7.69 -51.93 -0.40 1.10 16 36 H 0.07 1.53 6.64 -51.93 -0.34 1.18 16 37 H 0.09 1.56 5.76 -51.93 -0.30 1.26 16 38 H 0.16 2.00 8.06 -52.49 -0.42 1.57 16 39 H 0.09 0.58 8.14 -51.92 -0.42 0.16 16 40 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.08 0.41 8.11 -51.93 -0.42 -0.01 16 42 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 44 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 45 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.09 0.50 8.14 -51.92 -0.42 0.08 16 47 H 0.08 1.63 7.74 -51.93 -0.40 1.23 16 48 H 0.12 2.15 3.75 -109.57 -0.41 1.74 16 49 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 50 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 51 H 0.38 9.92 5.94 -40.82 -0.24 9.68 16 52 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 398.65 15.07 6.01 6.01 Total: -1.00 -32.96 398.65 -10.33 -43.29 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -8.75 Total: 10.32 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -2.73 Total: -2.33 kcal Atomic # 7 Polarization: -63.24 SS G_CDS: 0.08 Total: -63.16 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.09 Total: -11.35 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.96 -10.33 -43.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037869691.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.147 kcal (2) G-P(sol) polarization free energy of solvation -32.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds