Wall clock time and date at job start Wed Apr 1 2020 05:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47008 * 2 1 4 4 H 1.08997 * 109.49610 * 55.06767 * 3 2 1 5 5 C 1.53182 * 109.49787 * 294.99753 * 3 2 1 6 6 N 1.46925 * 108.77709 * 185.38078 * 5 3 2 7 7 C 1.34780 * 120.63335 * 233.58594 * 6 5 3 8 8 O 1.21575 * 119.99723 * 7.02566 * 7 6 5 9 9 C 1.47711 * 120.00266 * 187.02757 * 7 6 5 10 10 C 1.41634 * 126.49843 * 187.06974 * 9 7 6 11 11 C 1.34696 * 105.33783 * 180.02562 * 10 9 7 12 12 N 1.35503 * 107.71171 * 0.03533 * 11 10 9 13 13 N 1.28421 * 109.72310 * 359.94834 * 12 11 10 14 14 C 1.46943 * 123.89473 * 179.97438 * 12 11 10 15 15 C 1.53144 * 108.91972 * 342.32309 * 14 12 11 16 16 C 1.53159 * 109.58289 * 51.11811 * 15 14 12 17 17 C 1.50802 * 127.54274 * 180.02562 * 11 10 9 18 18 C 1.46924 * 118.73640 * 53.86314 * 6 5 3 19 19 C 1.53619 * 108.54204 * 306.09250 * 18 6 5 20 20 C 1.53036 * 109.24282 * 54.85844 * 19 18 6 21 21 H 1.09000 * 109.46033 * 58.52900 * 20 19 18 22 22 N 1.46499 * 109.45105 * 178.49430 * 20 19 18 23 23 C 1.36935 * 120.00330 * 275.06080 * 22 20 19 24 24 H 1.07995 * 120.00130 * 0.02562 * 23 22 20 25 25 C 1.38813 * 120.00020 * 179.97438 * 23 22 20 26 26 N 1.31612 * 120.00259 * 0.02562 * 25 23 22 27 27 Si 1.86802 * 119.99885 * 179.97438 * 25 23 22 28 28 H 1.48505 * 109.46960 * 0.02562 * 27 25 23 29 29 H 1.48506 * 109.46503 * 120.00691 * 27 25 23 30 30 H 1.48492 * 109.47533 * 240.00297 * 27 25 23 31 31 H 1.09005 * 109.47299 * 299.99775 * 1 2 3 32 32 H 1.09002 * 109.47425 * 59.99868 * 1 2 3 33 33 H 1.09001 * 109.46993 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.47519 * 240.00032 * 2 1 3 35 35 H 1.09003 * 109.47175 * 119.99393 * 2 1 3 36 36 H 1.09009 * 109.58717 * 65.59315 * 5 3 2 37 37 H 1.08996 * 109.59181 * 305.17246 * 5 3 2 38 38 H 1.08005 * 127.33256 * 0.02562 * 10 9 7 39 39 H 1.09000 * 109.53011 * 222.50157 * 14 12 11 40 40 H 1.08998 * 109.56973 * 102.16606 * 14 12 11 41 41 H 1.09002 * 109.44850 * 291.09098 * 15 14 12 42 42 H 1.08995 * 109.44553 * 171.14357 * 15 14 12 43 43 H 1.08998 * 109.53722 * 50.29447 * 16 15 14 44 44 H 1.09001 * 109.53684 * 170.46811 * 16 15 14 45 45 H 1.09004 * 109.71545 * 44.77965 * 17 11 10 46 46 H 1.08997 * 109.72019 * 284.14015 * 17 11 10 47 47 H 1.08998 * 109.58788 * 65.92580 * 18 6 5 48 48 H 1.09009 * 109.58465 * 186.35079 * 18 6 5 49 49 H 1.09002 * 109.63536 * 294.86333 * 19 18 6 50 50 H 1.09001 * 109.43311 * 174.72822 * 19 18 6 51 51 H 0.97006 * 119.99805 * 95.06256 * 22 20 19 52 52 H 0.97001 * 120.00587 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6065 1.9816 0.8424 5 6 1.6350 2.1280 -1.3087 6 7 2.2408 3.4659 -1.3489 7 6 1.4804 4.5579 -1.5634 8 8 0.2693 4.4579 -1.5985 9 6 2.1186 5.8761 -1.7559 10 6 1.4587 7.1258 -1.8502 11 6 2.4385 8.0341 -2.0211 12 7 3.6195 7.3697 -2.0300 13 7 3.4106 6.1123 -1.8733 14 6 4.9256 8.0223 -2.1958 15 6 4.7111 9.4209 -2.7816 16 6 3.6652 10.1705 -1.9510 17 6 2.2908 9.5266 -2.1781 18 6 3.6921 3.5903 -1.1570 19 6 4.0732 2.8890 0.1555 20 6 3.5655 1.4457 0.1221 21 1 3.9993 0.9279 -0.7333 22 7 3.9577 0.7618 1.3569 23 6 5.1963 0.1866 1.4572 24 1 5.8842 0.2374 0.6262 25 6 5.5681 -0.4609 2.6274 26 7 4.7301 -0.5224 3.6403 27 14 7.2575 -1.2463 2.7640 28 1 8.0034 -1.0395 1.4966 29 1 8.0045 -0.6216 3.8852 30 1 7.1079 -2.7015 3.0190 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5137 0.8901 36 1 0.5495 2.2168 -1.3541 37 1 1.9912 1.5401 -2.1546 38 1 0.3960 7.3110 -1.7965 39 1 5.5437 7.4335 -2.8735 40 1 5.4185 8.1039 -1.2271 41 1 4.3627 9.3338 -3.8108 42 1 5.6520 9.9707 -2.7622 43 1 3.9270 10.1099 -0.8946 44 1 3.6350 11.2154 -2.2598 45 1 1.5822 9.9055 -1.4416 46 1 1.9365 9.7574 -3.1827 47 1 4.2127 3.1191 -1.9908 48 1 3.9645 4.6444 -1.1023 49 1 3.6206 3.4145 0.9964 50 1 5.1576 2.8907 0.2661 51 1 3.3400 0.7165 2.1034 52 1 4.9897 -0.9752 4.4580 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037869693.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:54:17 Heat of formation + Delta-G solvation = 50.641680 kcal Electronic energy + Delta-G solvation = -31382.215944 eV Core-core repulsion = 27383.283814 eV Total energy + Delta-G solvation = -3998.932130 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.96761 -39.79674 -37.65154 -36.92222 -34.60255 -33.69865 -33.33329 -31.63578 -30.77983 -29.35120 -28.95004 -28.51375 -25.64158 -24.58992 -23.69878 -23.34507 -22.42998 -22.05043 -20.70656 -20.04726 -19.54251 -18.62213 -17.14323 -17.03777 -16.71064 -16.29429 -15.79102 -15.12393 -14.88500 -14.78691 -14.60000 -14.27423 -14.06517 -13.88472 -13.73159 -13.57054 -13.28304 -13.18699 -13.00150 -12.88824 -12.55542 -12.32385 -11.99424 -11.95644 -11.64946 -11.56901 -11.49377 -11.44920 -11.19584 -10.90817 -10.87294 -10.64647 -10.37533 -10.22279 -10.13082 -10.04387 -9.82342 -9.60006 -9.50096 -9.16602 -9.05203 -8.81395 -8.29024 -6.89788 -5.73210 -3.01117 1.55004 2.02527 2.20661 3.23666 3.44229 3.49807 3.52116 3.53670 3.89613 4.11112 4.18498 4.27634 4.54931 4.61664 4.73506 4.85725 4.90969 5.09185 5.13942 5.20705 5.24905 5.32352 5.35075 5.42795 5.45035 5.54930 5.55387 5.62155 5.65580 5.67726 5.72652 5.78548 5.80727 5.93393 5.97721 6.14864 6.22739 6.25272 6.36622 6.47308 6.47617 6.50103 6.57179 6.63043 6.75793 6.85545 6.95276 7.06610 7.17778 7.62635 7.73551 7.87416 8.38220 8.45235 9.56540 10.15315 10.50513 11.49485 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011969 B = 0.002850 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.825228 B = 9821.872659 C =11702.712869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 C -0.104 4.104 4 H 0.070 0.930 5 C 0.119 3.881 6 N -0.592 5.592 7 C 0.601 3.399 8 O -0.544 6.544 9 C -0.006 4.006 10 C -0.177 4.177 11 C 0.012 3.988 12 N -0.285 5.285 13 N -0.253 5.253 14 C 0.119 3.881 15 C -0.136 4.136 16 C -0.128 4.128 17 C -0.051 4.051 18 C 0.088 3.912 19 C -0.148 4.148 20 C 0.183 3.817 21 H 0.047 0.953 22 N -0.721 5.721 23 C -0.233 4.233 24 H 0.070 0.930 25 C -0.015 4.015 26 N -0.932 5.932 27 Si 0.903 3.097 28 H -0.281 1.281 29 H -0.293 1.293 30 H -0.292 1.292 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.056 0.944 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.066 0.934 38 H 0.161 0.839 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.077 0.923 42 H 0.094 0.906 43 H 0.072 0.928 44 H 0.080 0.920 45 H 0.091 0.909 46 H 0.086 0.914 47 H 0.061 0.939 48 H 0.118 0.882 49 H 0.056 0.944 50 H 0.072 0.928 51 H 0.384 0.616 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.183 21.847 -14.774 26.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.124 4.124 4 H 0.088 0.912 5 C -0.003 4.003 6 N -0.324 5.324 7 C 0.387 3.613 8 O -0.420 6.420 9 C -0.166 4.166 10 C -0.205 4.205 11 C -0.112 4.112 12 N -0.074 5.074 13 N -0.088 5.088 14 C -0.001 4.001 15 C -0.174 4.174 16 C -0.166 4.166 17 C -0.090 4.090 18 C -0.036 4.036 19 C -0.189 4.189 20 C 0.073 3.927 21 H 0.065 0.935 22 N -0.361 5.361 23 C -0.365 4.365 24 H 0.088 0.912 25 C -0.210 4.210 26 N -0.581 5.581 27 Si 0.735 3.265 28 H -0.206 1.206 29 H -0.220 1.220 30 H -0.220 1.220 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.084 0.916 38 H 0.178 0.822 39 H 0.119 0.881 40 H 0.112 0.888 41 H 0.096 0.904 42 H 0.113 0.887 43 H 0.090 0.910 44 H 0.099 0.901 45 H 0.109 0.891 46 H 0.105 0.895 47 H 0.079 0.921 48 H 0.135 0.865 49 H 0.075 0.925 50 H 0.091 0.909 51 H 0.218 0.782 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.467 21.212 -14.845 26.008 hybrid contribution 0.271 -0.172 0.533 0.622 sum -2.196 21.040 -14.312 25.541 Atomic orbital electron populations 1.21844 0.96821 1.00948 1.01364 1.21448 0.94367 0.95737 1.03398 1.21769 0.97652 0.96168 0.96771 0.91191 1.21785 0.99408 0.81239 0.97862 1.47986 1.09046 1.06167 1.69158 1.16987 0.85783 0.81835 0.76703 1.90750 1.13167 1.85233 1.52871 1.21975 0.89425 0.95422 1.09801 1.21272 1.00180 0.90153 1.08848 1.21254 0.85835 0.96242 1.07845 1.45916 1.07276 1.03708 1.50504 1.73404 1.18510 0.97716 1.19189 1.22145 0.80768 0.93545 1.03623 1.21934 1.01289 0.93615 1.00553 1.21703 0.94004 0.99961 1.00882 1.20344 0.98277 0.86887 1.03476 1.22623 0.78505 1.04347 0.98121 1.22718 1.01818 0.98912 0.95456 1.20213 0.90781 0.90703 0.91038 0.93524 1.42428 1.16406 1.64495 1.12789 1.19265 0.91761 1.26931 0.98517 0.91240 1.24717 0.98100 1.01741 0.96479 1.69667 1.35154 1.48568 1.04714 0.86165 0.84154 0.78893 0.77280 1.20627 1.22031 1.21971 0.92969 0.93185 0.93235 0.92497 0.89836 0.89098 0.91619 0.82165 0.88076 0.88789 0.90416 0.88728 0.90967 0.90101 0.89073 0.89545 0.92092 0.86481 0.92528 0.90905 0.78247 0.93651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.67 37.15 0.36 -1.88 16 2 C -0.11 -1.90 5.31 -26.73 -0.14 -2.05 16 3 C -0.10 -1.83 1.92 -90.50 -0.17 -2.01 16 4 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 5 C 0.12 1.93 5.33 -3.72 -0.02 1.91 16 6 N -0.59 -9.82 2.97 -173.67 -0.52 -10.34 16 7 C 0.60 10.40 7.69 -12.39 -0.10 10.31 16 8 O -0.54 -10.55 16.36 5.30 0.09 -10.46 16 9 C -0.01 -0.10 6.83 -82.69 -0.56 -0.66 16 10 C -0.18 -2.26 10.76 -39.54 -0.43 -2.68 16 11 C 0.01 0.12 6.57 -82.18 -0.54 -0.42 16 12 N -0.29 -3.05 3.74 -56.75 -0.21 -3.26 16 13 N -0.25 -3.49 8.51 33.46 0.28 -3.20 16 14 C 0.12 0.77 7.17 -3.73 -0.03 0.74 16 15 C -0.14 -0.53 5.92 -26.57 -0.16 -0.68 16 16 C -0.13 -0.53 5.98 -26.41 -0.16 -0.68 16 17 C -0.05 -0.30 6.28 -27.59 -0.17 -0.47 16 18 C 0.09 1.39 6.14 -3.49 -0.02 1.37 16 19 C -0.15 -2.75 5.67 -26.39 -0.15 -2.90 16 20 C 0.18 3.67 2.19 -67.89 -0.15 3.52 16 21 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 22 N -0.72 -17.84 4.33 -53.39 -0.23 -18.07 16 23 C -0.23 -6.39 9.93 -15.06 -0.15 -6.53 16 24 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 25 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 26 N -0.93 -28.13 13.06 55.49 0.72 -27.40 16 27 Si 0.90 22.38 29.55 -169.99 -5.02 17.36 16 28 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 29 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 30 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.68 6.70 -51.93 -0.35 0.33 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.08 1.68 7.22 -51.93 -0.38 1.31 16 36 H 0.09 1.49 5.72 -51.92 -0.30 1.20 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.16 1.86 8.06 -52.48 -0.42 1.44 16 39 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.32 8.11 -51.93 -0.42 -0.10 16 42 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 43 H 0.07 0.34 8.12 -51.93 -0.42 -0.08 16 44 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 45 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.12 1.82 4.17 -70.17 -0.29 1.52 16 49 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 50 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 51 H 0.38 10.24 7.51 -40.82 -0.31 9.93 16 52 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 402.50 15.07 6.07 6.07 Total: -1.00 -33.59 402.50 -10.27 -43.87 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -8.77 Total: 9.08 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -2.68 Total: -3.64 kcal Atomic # 7 Polarization: -62.32 SS G_CDS: 0.05 Total: -62.27 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.09 Total: -10.46 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.59 -10.27 -43.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037869693.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.507 kcal (2) G-P(sol) polarization free energy of solvation -33.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds