Wall clock time and date at job start Wed Apr 1 2020 05:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.47083 * 2 1 4 4 H 1.09000 * 109.49441 * 304.99635 * 3 2 1 5 5 C 1.53191 * 109.49660 * 65.06528 * 3 2 1 6 6 N 1.46920 * 108.77331 * 174.58561 * 5 3 2 7 7 C 1.34775 * 120.63244 * 126.41223 * 6 5 3 8 8 O 1.21577 * 120.00072 * 353.00680 * 7 6 5 9 9 C 1.47711 * 120.00301 * 173.00669 * 7 6 5 10 10 C 1.41640 * 126.49637 * 172.87916 * 9 7 6 11 11 C 1.34704 * 105.33592 * 179.97438 * 10 9 7 12 12 N 1.35509 * 107.71193 * 0.02623 * 11 10 9 13 13 N 1.28424 * 109.71856 * 359.68602 * 12 11 10 14 14 C 1.46992 * 123.90434 * 179.90836 * 12 11 10 15 15 C 1.53145 * 108.88937 * 342.36559 * 14 12 11 16 16 C 1.53153 * 109.60552 * 51.10581 * 15 14 12 17 17 C 1.50799 * 127.54066 * 180.02562 * 11 10 9 18 18 C 1.46923 * 118.74085 * 306.38897 * 6 5 3 19 19 C 1.53194 * 108.77624 * 53.60964 * 18 6 5 20 20 C 1.53037 * 109.33863 * 305.38515 * 19 18 6 21 21 H 1.09005 * 109.42816 * 301.30662 * 20 19 18 22 22 N 1.46497 * 109.48996 * 181.35329 * 20 19 18 23 23 C 1.36939 * 120.00308 * 84.90519 * 22 20 19 24 24 H 1.08005 * 119.99668 * 0.02562 * 23 22 20 25 25 C 1.38808 * 120.00097 * 180.02562 * 23 22 20 26 26 N 1.31614 * 120.00281 * 0.02562 * 25 23 22 27 27 Si 1.86809 * 119.99899 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.46762 * 90.00428 * 27 25 23 29 29 H 1.48498 * 109.47155 * 210.00232 * 27 25 23 30 30 H 1.48497 * 109.47071 * 330.00576 * 27 25 23 31 31 H 1.08997 * 109.46556 * 60.00230 * 1 2 3 32 32 H 1.08996 * 109.46755 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47072 * 299.99924 * 1 2 3 34 34 H 1.08995 * 109.47275 * 239.99570 * 2 1 3 35 35 H 1.09005 * 109.46841 * 120.00339 * 2 1 3 36 36 H 1.09005 * 109.58756 * 294.37216 * 5 3 2 37 37 H 1.08994 * 109.58796 * 54.65708 * 5 3 2 38 38 H 1.07994 * 127.33559 * 359.97395 * 10 9 7 39 39 H 1.09007 * 109.56550 * 102.18267 * 14 12 11 40 40 H 1.08998 * 109.56849 * 222.54045 * 14 12 11 41 41 H 1.08997 * 109.44990 * 171.14986 * 15 14 12 42 42 H 1.09009 * 109.44502 * 291.08947 * 15 14 12 43 43 H 1.09000 * 109.54380 * 50.27772 * 16 15 14 44 44 H 1.08996 * 109.53821 * 170.45266 * 16 15 14 45 45 H 1.09001 * 109.71650 * 284.10130 * 17 11 10 46 46 H 1.08999 * 109.71866 * 44.73913 * 17 11 10 47 47 H 1.09005 * 109.59010 * 173.39217 * 18 6 5 48 48 H 1.08993 * 109.59175 * 293.67918 * 18 6 5 49 49 H 1.09007 * 109.49525 * 65.31325 * 19 18 6 50 50 H 1.09000 * 109.50074 * 185.37736 * 19 18 6 51 51 H 0.97001 * 119.99722 * 264.91868 * 22 20 19 52 52 H 0.97003 * 120.00308 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6057 1.9819 -0.8417 5 6 1.6365 2.1275 1.3095 6 7 2.2430 3.4650 1.3499 7 6 1.4834 4.5573 1.5654 8 8 0.2723 4.4579 1.6020 9 6 2.1223 5.8752 1.7573 10 6 1.4631 7.1252 1.8516 11 6 2.4435 8.0331 2.0218 12 7 3.6243 7.3683 2.0290 13 7 3.4141 6.1102 1.8795 14 6 4.9315 8.0206 2.1912 15 6 4.7780 9.5170 1.9043 16 6 3.6172 10.0818 2.7284 17 6 2.2965 9.5256 2.1796 18 6 3.6934 3.5894 1.1513 19 6 4.0740 2.8880 -0.1564 20 6 3.5654 1.4450 -0.1241 21 1 4.0002 0.9263 0.7304 22 7 3.9557 0.7614 -1.3597 23 6 5.1939 0.1857 -1.4620 24 1 5.8827 0.2352 -0.6315 25 6 5.5638 -0.4615 -2.6329 26 7 4.7247 -0.5214 -3.6451 27 14 7.2528 -1.2475 -2.7721 28 1 7.1826 -2.6566 -2.3089 29 1 7.6994 -1.2135 -4.1880 30 1 8.2189 -0.4972 -1.9302 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.8934 -0.5139 0.8900 36 1 0.5511 2.2169 1.3557 37 1 1.9909 1.5376 2.1547 38 1 0.4006 7.3110 1.7984 39 1 5.2859 7.8791 3.2123 40 1 5.6456 7.5861 1.4916 41 1 5.6990 10.0344 2.1725 42 1 4.5748 9.6641 0.8434 43 1 3.7325 9.7860 3.7711 44 1 3.6142 11.1694 2.6562 45 1 2.0810 9.9782 1.2117 46 1 1.4873 9.7438 2.8765 47 1 3.9653 4.6434 1.0931 48 1 4.2178 3.1223 1.9849 49 1 3.6209 3.4142 -0.9967 50 1 5.1583 2.8898 -0.2680 51 1 3.3370 0.7168 -2.1054 52 1 4.9831 -0.9740 -4.4632 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037869696.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:54:22 Heat of formation + Delta-G solvation = 50.528042 kcal Electronic energy + Delta-G solvation = -31385.637936 eV Core-core repulsion = 27386.700879 eV Total energy + Delta-G solvation = -3998.937058 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.96350 -39.80076 -37.65492 -36.92058 -34.60504 -33.70049 -33.32998 -31.64276 -30.77690 -29.37017 -28.95009 -28.51274 -25.64114 -24.58875 -23.69673 -23.34374 -22.42445 -22.04968 -20.71093 -20.05763 -19.52361 -18.60420 -17.18152 -17.05356 -16.76758 -16.17726 -15.79777 -15.09155 -14.93858 -14.73419 -14.60000 -14.37714 -14.01456 -13.86188 -13.73599 -13.58629 -13.27799 -13.19352 -12.99724 -12.86730 -12.59412 -12.32086 -12.00400 -11.93012 -11.64328 -11.56927 -11.49044 -11.46123 -11.19452 -10.90901 -10.85618 -10.64344 -10.37907 -10.22162 -10.15674 -10.05044 -9.82390 -9.59783 -9.50027 -9.16419 -9.05009 -8.80968 -8.29237 -6.89844 -5.73070 -3.01042 1.55048 2.02636 2.20768 3.23547 3.44593 3.49670 3.51350 3.53769 3.89779 4.11224 4.19021 4.27766 4.55056 4.61702 4.72069 4.86146 4.91425 5.09356 5.15011 5.20986 5.24878 5.32482 5.35127 5.42688 5.44915 5.55170 5.55607 5.62031 5.65541 5.67860 5.72656 5.78802 5.80792 5.93464 5.97806 6.14996 6.22794 6.25333 6.36551 6.47671 6.47686 6.50108 6.57207 6.63087 6.75675 6.85321 6.95286 7.06572 7.17717 7.62647 7.73017 7.87393 8.38205 8.45428 9.56621 10.15376 10.50601 11.49564 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012002 B = 0.002856 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.369091 B = 9802.050048 C =11717.473023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 C -0.104 4.104 4 H 0.070 0.930 5 C 0.119 3.881 6 N -0.592 5.592 7 C 0.601 3.399 8 O -0.544 6.544 9 C -0.007 4.007 10 C -0.177 4.177 11 C 0.012 3.988 12 N -0.286 5.286 13 N -0.253 5.253 14 C 0.120 3.880 15 C -0.137 4.137 16 C -0.127 4.127 17 C -0.052 4.052 18 C 0.089 3.911 19 C -0.148 4.148 20 C 0.183 3.817 21 H 0.047 0.953 22 N -0.721 5.721 23 C -0.234 4.234 24 H 0.069 0.931 25 C -0.014 4.014 26 N -0.933 5.933 27 Si 0.904 3.096 28 H -0.291 1.291 29 H -0.293 1.293 30 H -0.283 1.283 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.083 0.917 35 H 0.056 0.944 36 H 0.091 0.909 37 H 0.066 0.934 38 H 0.161 0.839 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.094 0.906 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.080 0.920 45 H 0.087 0.913 46 H 0.091 0.909 47 H 0.117 0.883 48 H 0.061 0.939 49 H 0.056 0.944 50 H 0.073 0.927 51 H 0.384 0.616 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.132 21.853 14.584 26.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.124 4.124 4 H 0.088 0.912 5 C -0.003 4.003 6 N -0.323 5.323 7 C 0.387 3.613 8 O -0.420 6.420 9 C -0.166 4.166 10 C -0.205 4.205 11 C -0.112 4.112 12 N -0.074 5.074 13 N -0.088 5.088 14 C 0.000 4.000 15 C -0.175 4.175 16 C -0.165 4.165 17 C -0.090 4.090 18 C -0.035 4.035 19 C -0.190 4.190 20 C 0.073 3.927 21 H 0.065 0.935 22 N -0.361 5.361 23 C -0.366 4.366 24 H 0.087 0.913 25 C -0.210 4.210 26 N -0.581 5.581 27 Si 0.735 3.265 28 H -0.218 1.218 29 H -0.219 1.219 30 H -0.209 1.209 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.102 0.898 35 H 0.075 0.925 36 H 0.109 0.891 37 H 0.084 0.916 38 H 0.178 0.822 39 H 0.111 0.889 40 H 0.120 0.880 41 H 0.113 0.887 42 H 0.097 0.903 43 H 0.089 0.911 44 H 0.099 0.901 45 H 0.105 0.895 46 H 0.109 0.891 47 H 0.134 0.866 48 H 0.079 0.921 49 H 0.074 0.926 50 H 0.091 0.909 51 H 0.218 0.782 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.415 21.223 14.650 25.901 hybrid contribution 0.270 -0.178 -0.513 0.606 sum -2.145 21.045 14.137 25.443 Atomic orbital electron populations 1.21843 0.96822 1.00949 1.01363 1.21451 0.94368 0.95736 1.03401 1.21769 0.97656 0.96174 0.96762 0.91191 1.21778 0.99404 0.81261 0.97858 1.47975 1.09093 1.06164 1.69105 1.16984 0.85779 0.81823 0.76707 1.90751 1.13160 1.85228 1.52878 1.21972 0.89459 0.95420 1.09787 1.21274 1.00179 0.90157 1.08848 1.21255 0.85813 0.96261 1.07847 1.45931 1.07250 1.03668 1.50578 1.73414 1.18514 0.97733 1.19144 1.22151 0.80926 0.92798 1.04150 1.21942 1.00583 0.92896 1.02073 1.21692 0.93662 1.01231 0.99877 1.20344 0.98710 0.87188 1.02771 1.22508 0.78552 1.04295 0.98131 1.22644 1.01845 0.98954 0.95509 1.20207 0.90786 0.90698 0.91029 0.93531 1.42418 1.16412 1.64484 1.12783 1.19221 0.91804 1.27033 0.98494 0.91296 1.24715 0.98097 1.01719 0.96466 1.69659 1.35253 1.48500 1.04718 0.86235 0.84164 0.79341 0.76722 1.21816 1.21911 1.20864 0.92975 0.93234 0.93179 0.89831 0.92499 0.89114 0.91608 0.82169 0.88943 0.87955 0.88719 0.90288 0.91094 0.90103 0.89499 0.89090 0.86586 0.92106 0.92556 0.90864 0.78245 0.93598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.67 37.16 0.36 -1.88 16 2 C -0.11 -1.91 5.31 -26.73 -0.14 -2.05 16 3 C -0.10 -1.83 1.92 -90.50 -0.17 -2.01 16 4 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 5 C 0.12 1.93 5.34 -3.71 -0.02 1.91 16 6 N -0.59 -9.82 2.97 -173.94 -0.52 -10.34 16 7 C 0.60 10.41 7.69 -12.39 -0.10 10.32 16 8 O -0.54 -10.55 16.36 5.30 0.09 -10.47 16 9 C -0.01 -0.10 6.82 -82.68 -0.56 -0.66 16 10 C -0.18 -2.26 10.76 -39.54 -0.43 -2.68 16 11 C 0.01 0.12 6.57 -82.17 -0.54 -0.42 16 12 N -0.29 -3.05 3.74 -56.71 -0.21 -3.27 16 13 N -0.25 -3.49 8.53 33.46 0.29 -3.20 16 14 C 0.12 0.77 7.17 -3.70 -0.03 0.75 16 15 C -0.14 -0.55 5.91 -26.58 -0.16 -0.71 16 16 C -0.13 -0.51 5.98 -26.42 -0.16 -0.67 16 17 C -0.05 -0.30 6.28 -27.60 -0.17 -0.48 16 18 C 0.09 1.41 6.10 -3.71 -0.02 1.39 16 19 C -0.15 -2.76 5.66 -26.61 -0.15 -2.91 16 20 C 0.18 3.67 2.19 -67.89 -0.15 3.52 16 21 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 22 N -0.72 -17.83 4.33 -53.39 -0.23 -18.06 16 23 C -0.23 -6.41 9.93 -15.06 -0.15 -6.56 16 24 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 25 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 26 N -0.93 -28.13 13.06 55.49 0.72 -27.41 16 27 Si 0.90 22.37 29.55 -169.99 -5.02 17.35 16 28 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 29 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 30 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.68 6.70 -51.93 -0.35 0.33 16 34 H 0.08 1.68 7.22 -51.93 -0.37 1.31 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.09 1.49 5.72 -51.93 -0.30 1.19 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.16 1.86 8.06 -52.49 -0.42 1.44 16 39 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 42 H 0.08 0.37 8.11 -51.92 -0.42 -0.05 16 43 H 0.07 0.30 8.12 -51.93 -0.42 -0.12 16 44 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 45 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.12 1.80 4.19 -67.54 -0.28 1.52 16 48 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 49 H 0.06 1.12 8.14 -51.92 -0.42 0.70 16 50 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 51 H 0.38 10.24 7.51 -40.82 -0.31 9.93 16 52 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 402.50 15.07 6.07 6.07 Total: -1.00 -33.56 402.50 -10.26 -43.83 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -8.76 Total: 9.15 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -2.68 Total: -3.64 kcal Atomic # 7 Polarization: -62.33 SS G_CDS: 0.05 Total: -62.28 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.09 Total: -10.47 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.56 -10.26 -43.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037869696.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.354 kcal (2) G-P(sol) polarization free energy of solvation -33.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds