Wall clock time and date at job start Wed Apr 1 2020 05:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.46962 * 2 1 4 4 H 1.09004 * 109.49808 * 304.93689 * 3 2 1 5 5 C 1.53190 * 109.49959 * 64.99919 * 3 2 1 6 6 N 1.46921 * 108.77776 * 174.58619 * 5 3 2 7 7 C 1.34779 * 120.63244 * 126.36940 * 6 5 3 8 8 O 1.21592 * 119.99833 * 3.78930 * 7 6 5 9 9 C 1.47548 * 120.00266 * 183.78784 * 7 6 5 10 10 C 1.40347 * 120.47627 * 309.77581 * 9 7 6 11 11 C 1.36855 * 118.49411 * 179.97438 * 10 9 7 12 12 C 1.39392 * 119.37727 * 0.02562 * 11 10 9 13 13 N 1.38464 * 119.53939 * 179.97438 * 12 11 10 14 14 C 1.46504 * 120.00005 * 4.99777 * 13 12 11 15 15 C 1.46503 * 120.00140 * 184.99870 * 13 12 11 16 16 N 1.32604 * 120.92328 * 359.97438 * 12 11 10 17 17 C 1.31673 * 121.63722 * 359.97438 * 16 12 11 18 18 C 1.46927 * 118.74048 * 306.64199 * 6 5 3 19 19 C 1.52765 * 109.00629 * 53.31250 * 18 6 5 20 20 C 1.53039 * 109.50052 * 184.83746 * 3 2 1 21 21 H 1.09006 * 109.45928 * 58.67709 * 20 3 2 22 22 N 1.46502 * 109.45922 * 298.70738 * 20 3 2 23 23 C 1.36940 * 120.00023 * 154.99881 * 22 20 3 24 24 H 1.07994 * 119.99960 * 359.97438 * 23 22 20 25 25 C 1.38815 * 119.99776 * 179.97438 * 23 22 20 26 26 N 1.31622 * 119.99746 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 119.99879 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.46777 * 0.02562 * 27 25 23 29 29 H 1.48505 * 109.46885 * 119.99876 * 27 25 23 30 30 H 1.48499 * 109.47252 * 240.00215 * 27 25 23 31 31 H 1.08996 * 109.47285 * 299.99699 * 1 2 3 32 32 H 1.09001 * 109.47376 * 60.00681 * 1 2 3 33 33 H 1.09001 * 109.47075 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47037 * 239.99624 * 2 1 3 35 35 H 1.08999 * 109.47213 * 120.00257 * 2 1 3 36 36 H 1.09004 * 109.58448 * 54.79610 * 5 3 2 37 37 H 1.09000 * 109.70107 * 294.44600 * 5 3 2 38 38 H 1.08002 * 120.75185 * 359.70173 * 10 9 7 39 39 H 1.08002 * 120.31111 * 179.97438 * 11 10 9 40 40 H 1.09003 * 109.46912 * 90.00173 * 14 13 12 41 41 H 1.08988 * 109.47145 * 210.00018 * 14 13 12 42 42 H 1.09006 * 109.46878 * 330.00580 * 14 13 12 43 43 H 1.08994 * 109.47139 * 0.02562 * 15 13 12 44 44 H 1.09001 * 109.47242 * 120.00110 * 15 13 12 45 45 H 1.09004 * 109.46972 * 239.99917 * 15 13 12 46 46 H 1.07998 * 119.74056 * 179.97438 * 17 16 12 47 47 H 1.08998 * 109.58892 * 173.14282 * 18 6 5 48 48 H 1.08997 * 109.58686 * 293.57202 * 18 6 5 49 49 H 1.08998 * 109.56724 * 185.55835 * 19 18 6 50 50 H 1.08993 * 109.36333 * 65.49464 * 19 18 6 51 51 H 0.97005 * 119.99769 * 334.99441 * 22 20 3 52 52 H 0.97006 * 119.99114 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6064 1.9816 -0.8424 5 6 1.6350 2.1280 1.3087 6 7 2.2414 3.4656 1.3493 7 6 1.4813 4.5580 1.5628 8 8 0.2935 4.4367 1.7925 9 6 2.0907 5.9010 1.5178 10 6 3.2544 6.1796 2.2512 11 6 3.7855 7.4389 2.1795 12 6 3.1604 8.4005 1.3874 13 7 3.6946 9.6758 1.3128 14 6 4.9667 9.9770 1.9742 15 6 2.9876 10.7240 0.5727 16 7 2.0614 8.1112 0.7042 17 6 1.5186 6.9122 0.7446 18 6 3.6912 3.5904 1.1467 19 6 4.0740 2.8881 -0.1548 20 6 3.5655 1.4450 -0.1217 21 1 3.8574 0.9362 -1.0404 22 7 4.1479 0.7485 1.0281 23 6 5.3861 0.1727 0.9246 24 1 5.9330 0.2317 -0.0048 25 6 5.9382 -0.4867 2.0142 26 7 5.2717 -0.5582 3.1470 27 14 7.6268 -1.2728 1.8727 28 1 8.1623 -1.0526 0.5052 29 1 8.5432 -0.6593 2.8674 30 1 7.5177 -2.7306 2.1333 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 1.9907 1.5397 2.1546 37 1 0.5497 2.2171 1.3563 38 1 3.7177 5.4188 2.8618 39 1 4.6800 7.6854 2.7322 40 1 5.7886 9.7896 1.2832 41 1 4.9792 11.0235 2.2783 42 1 5.0787 9.3417 2.8529 43 1 2.0681 10.3157 0.1536 44 1 2.7458 11.5452 1.2474 45 1 3.6230 11.0912 -0.2333 46 1 0.6228 6.7101 0.1761 47 1 3.9622 4.6444 1.0848 48 1 4.2180 3.1239 1.9790 49 1 5.1584 2.8892 -0.2650 50 1 3.6218 3.4138 -0.9957 51 1 3.6565 0.6952 1.8628 52 1 5.6574 -1.0193 3.9082 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037871535.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:55:05 Heat of formation + Delta-G solvation = 30.664226 kcal Electronic energy + Delta-G solvation = -31521.862411 eV Core-core repulsion = 27522.063993 eV Total energy + Delta-G solvation = -3999.798417 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.84237 -39.62874 -37.77986 -36.58598 -34.49903 -33.74813 -32.72321 -31.67471 -30.78857 -29.41571 -28.60814 -28.37296 -26.22414 -24.74985 -23.95944 -23.50111 -23.16430 -22.02123 -20.75465 -19.91226 -18.43461 -17.63767 -17.38619 -17.07669 -16.65705 -15.91296 -15.60843 -14.92858 -14.89466 -14.76721 -14.52111 -14.27961 -13.99824 -13.83465 -13.52165 -13.44709 -13.24671 -13.11591 -12.90895 -12.85660 -12.66953 -12.47807 -12.36647 -12.19061 -12.09834 -11.71776 -11.38315 -11.06496 -11.00176 -10.81235 -10.76005 -10.29879 -10.25114 -10.21238 -10.13294 -9.87172 -9.79588 -9.74829 -9.54865 -9.34729 -8.92227 -8.20856 -7.76003 -6.97887 -5.80182 -3.08310 0.98949 1.23562 2.63074 2.93009 3.32086 3.39851 3.46413 3.48169 3.81146 4.28954 4.56353 4.62748 4.73250 4.81003 4.92305 4.95118 5.06152 5.12379 5.18258 5.28516 5.30968 5.33351 5.36695 5.54139 5.56883 5.58592 5.60082 5.64147 5.72253 5.79249 5.84917 5.87913 5.94390 6.05297 6.12581 6.17852 6.22420 6.32544 6.37936 6.41414 6.44282 6.58696 6.61373 6.67308 6.72904 6.79381 6.96266 7.03764 7.06780 7.68295 7.74088 7.93276 8.38407 8.43038 9.50185 10.07161 10.42421 11.42220 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010919 B = 0.003135 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.610557 B = 8930.591234 C =10793.246012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.103 4.103 4 H 0.066 0.934 5 C 0.119 3.881 6 N -0.594 5.594 7 C 0.568 3.432 8 O -0.551 6.551 9 C -0.235 4.235 10 C 0.001 3.999 11 C -0.243 4.243 12 C 0.414 3.586 13 N -0.613 5.613 14 C 0.092 3.908 15 C 0.091 3.909 16 N -0.547 5.547 17 C 0.200 3.800 18 C 0.108 3.892 19 C -0.149 4.149 20 C 0.179 3.821 21 H 0.050 0.950 22 N -0.718 5.718 23 C -0.235 4.235 24 H 0.070 0.930 25 C -0.012 4.012 26 N -0.932 5.932 27 Si 0.903 3.097 28 H -0.281 1.281 29 H -0.293 1.293 30 H -0.293 1.293 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.142 0.858 39 H 0.138 0.862 40 H 0.055 0.945 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.092 0.908 44 H 0.052 0.948 45 H 0.052 0.948 46 H 0.161 0.839 47 H 0.075 0.925 48 H 0.085 0.915 49 H 0.073 0.927 50 H 0.047 0.953 51 H 0.384 0.616 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.931 18.683 -4.546 19.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.123 4.123 4 H 0.084 0.916 5 C -0.003 4.003 6 N -0.325 5.325 7 C 0.355 3.645 8 O -0.430 6.430 9 C -0.243 4.243 10 C -0.025 4.025 11 C -0.267 4.267 12 C 0.179 3.821 13 N -0.326 5.326 14 C -0.052 4.052 15 C -0.052 4.052 16 N -0.264 5.264 17 C 0.041 3.959 18 C -0.015 4.015 19 C -0.191 4.191 20 C 0.068 3.932 21 H 0.068 0.932 22 N -0.361 5.361 23 C -0.366 4.366 24 H 0.088 0.912 25 C -0.208 4.208 26 N -0.580 5.580 27 Si 0.734 3.266 28 H -0.207 1.207 29 H -0.220 1.220 30 H -0.220 1.220 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.159 0.841 39 H 0.155 0.845 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.111 0.889 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.179 0.821 47 H 0.093 0.907 48 H 0.103 0.897 49 H 0.092 0.908 50 H 0.066 0.934 51 H 0.219 0.781 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.665 19.375 -4.978 20.541 hybrid contribution 1.495 -1.085 0.766 2.000 sum -3.170 18.290 -4.213 19.035 Atomic orbital electron populations 1.21855 0.96808 1.01025 1.01382 1.21414 0.94283 0.95731 1.03349 1.21744 0.97351 0.96130 0.97053 0.91569 1.21699 0.98791 0.81471 0.98306 1.48042 1.08725 1.06363 1.69332 1.17999 0.85909 0.83789 0.76770 1.90752 1.15465 1.86739 1.50031 1.20563 1.00249 0.96328 1.07189 1.21283 0.91527 0.95946 0.93748 1.21105 1.05200 0.94092 1.06353 1.18462 0.89077 0.85585 0.89019 1.46129 1.23232 1.07132 1.56129 1.21756 0.84091 1.01795 0.97518 1.21665 0.98353 0.89711 0.95433 1.67218 1.12227 1.21912 1.25051 1.22436 0.95905 0.85434 0.92108 1.21874 0.79209 1.00393 0.99987 1.22442 1.01712 0.99227 0.95673 1.20222 0.89774 0.90623 0.92555 0.93179 1.42488 1.19008 1.63993 1.10604 1.19257 0.93513 1.26831 0.97034 0.91250 1.24698 0.98516 1.01550 0.96056 1.69664 1.37976 1.48144 1.02232 0.86182 0.84333 0.78948 0.77096 1.20664 1.22028 1.22003 0.92735 0.93382 0.93188 0.92058 0.90488 0.90709 0.89526 0.84069 0.84472 0.92654 0.90951 0.90744 0.88890 0.92952 0.92921 0.82139 0.90709 0.89727 0.90827 0.93383 0.78089 0.93610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.67 37.16 0.36 -1.73 16 2 C -0.11 -1.75 5.19 -26.73 -0.14 -1.89 16 3 C -0.10 -1.67 2.14 -90.51 -0.19 -1.86 16 4 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 5 C 0.12 2.02 5.02 -3.71 -0.02 2.01 16 6 N -0.59 -9.74 2.98 -174.26 -0.52 -10.26 16 7 C 0.57 9.48 7.25 -12.46 -0.09 9.39 16 8 O -0.55 -10.71 16.47 5.28 0.09 -10.62 16 9 C -0.24 -3.36 5.02 -104.82 -0.53 -3.88 16 10 C 0.00 0.01 7.42 -39.29 -0.29 -0.28 16 11 C -0.24 -2.70 9.20 -39.65 -0.36 -3.07 16 12 C 0.41 4.90 7.36 -155.27 -1.14 3.75 16 13 N -0.61 -5.73 3.38 -189.70 -0.64 -6.37 16 14 C 0.09 0.56 10.31 59.85 0.62 1.18 16 15 C 0.09 0.71 10.71 59.85 0.64 1.35 16 16 N -0.55 -7.15 8.82 -12.14 -0.11 -7.25 16 17 C 0.20 2.69 10.90 -17.13 -0.19 2.50 16 18 C 0.11 1.71 5.11 -3.93 -0.02 1.69 16 19 C -0.15 -2.47 5.76 -26.83 -0.15 -2.63 16 20 C 0.18 3.29 2.53 -67.89 -0.17 3.11 16 21 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 22 N -0.72 -16.20 3.72 -53.38 -0.20 -16.40 16 23 C -0.24 -6.03 9.93 -15.06 -0.15 -6.18 16 24 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 25 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 26 N -0.93 -26.70 13.06 55.49 0.72 -25.98 16 27 Si 0.90 21.55 29.55 -169.99 -5.02 16.52 16 28 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 29 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 30 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 31 H 0.05 0.75 6.70 -51.93 -0.35 0.40 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.08 1.42 7.69 -51.93 -0.40 1.02 16 36 H 0.07 1.40 6.64 -51.93 -0.34 1.06 16 37 H 0.09 1.48 5.74 -51.93 -0.30 1.18 16 38 H 0.14 1.69 7.12 -52.49 -0.37 1.32 16 39 H 0.14 1.19 5.99 -52.49 -0.31 0.87 16 40 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.07 0.32 8.07 -51.94 -0.42 -0.10 16 42 H 0.07 0.42 5.95 -51.93 -0.31 0.11 16 43 H 0.09 0.85 6.80 -51.93 -0.35 0.50 16 44 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.16 1.98 8.06 -52.49 -0.42 1.55 16 47 H 0.07 1.05 4.54 -51.93 -0.24 0.82 16 48 H 0.08 1.55 7.74 -51.93 -0.40 1.15 16 49 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 50 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 51 H 0.38 9.31 5.94 -40.82 -0.24 9.07 16 52 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 402.79 15.07 6.07 6.07 Total: -1.00 -30.94 402.79 -9.77 -40.71 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -8.23 Total: 10.53 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: -1.93 Total: 3.04 kcal Atomic # 7 Polarization: -65.51 SS G_CDS: -0.74 Total: -66.25 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.09 Total: -10.62 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -30.94 -9.77 -40.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037871535.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.375 kcal (2) G-P(sol) polarization free energy of solvation -30.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds