Wall clock time and date at job start Wed Apr 1 2020 05:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.46958 * 2 1 4 4 H 1.08998 * 109.52945 * 54.92130 * 3 2 1 5 5 C 1.53192 * 109.49774 * 294.83789 * 3 2 1 6 6 N 1.46928 * 108.77467 * 185.41546 * 5 3 2 7 7 C 1.34772 * 120.62824 * 233.58601 * 6 5 3 8 8 O 1.21589 * 120.00612 * 356.17021 * 7 6 5 9 9 C 1.47545 * 120.00034 * 176.17660 * 7 6 5 10 10 C 1.40348 * 120.47726 * 230.87719 * 9 7 6 11 11 C 1.36851 * 118.49484 * 180.02562 * 10 9 7 12 12 C 1.39401 * 119.38074 * 359.97438 * 11 10 9 13 13 N 1.38457 * 119.54320 * 180.02562 * 12 11 10 14 14 C 1.46506 * 119.99571 * 4.99701 * 13 12 11 15 15 C 1.46495 * 120.00419 * 184.99864 * 13 12 11 16 16 N 1.32600 * 120.91835 * 359.97438 * 12 11 10 17 17 C 1.31679 * 121.63771 * 359.74946 * 16 12 11 18 18 C 1.46927 * 118.73807 * 53.60765 * 6 5 3 19 19 C 1.53189 * 108.77898 * 306.38977 * 18 6 5 20 20 C 1.53038 * 109.49717 * 175.00014 * 3 2 1 21 21 H 1.08996 * 109.46572 * 61.30685 * 20 3 2 22 22 N 1.46508 * 109.46089 * 301.33557 * 20 3 2 23 23 C 1.36934 * 120.00218 * 155.00223 * 22 20 3 24 24 H 1.08005 * 119.99933 * 359.97438 * 23 22 20 25 25 C 1.38811 * 120.00253 * 180.02562 * 23 22 20 26 26 N 1.31616 * 119.99739 * 0.02562 * 25 23 22 27 27 Si 1.86794 * 119.99978 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.46913 * 179.97438 * 27 25 23 29 29 H 1.48498 * 109.47555 * 299.99966 * 27 25 23 30 30 H 1.48496 * 109.47075 * 60.00003 * 27 25 23 31 31 H 1.08996 * 109.47274 * 299.99950 * 1 2 3 32 32 H 1.08993 * 109.47150 * 60.00287 * 1 2 3 33 33 H 1.09007 * 109.46676 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.46880 * 239.99750 * 2 1 3 35 35 H 1.09007 * 109.46761 * 120.00142 * 2 1 3 36 36 H 1.09001 * 109.58636 * 305.19611 * 5 3 2 37 37 H 1.08995 * 109.58699 * 65.63004 * 5 3 2 38 38 H 1.08005 * 120.75310 * 0.02562 * 10 9 7 39 39 H 1.08004 * 120.30967 * 180.02562 * 11 10 9 40 40 H 1.09002 * 109.47062 * 90.00224 * 14 13 12 41 41 H 1.08997 * 109.46821 * 210.00070 * 14 13 12 42 42 H 1.08997 * 109.47367 * 330.00112 * 14 13 12 43 43 H 1.09000 * 109.46801 * 59.99993 * 15 13 12 44 44 H 1.08999 * 109.47151 * 179.97438 * 15 13 12 45 45 H 1.08994 * 109.47317 * 300.00442 * 15 13 12 46 46 H 1.08002 * 119.73793 * 180.26599 * 17 16 12 47 47 H 1.08994 * 109.58815 * 66.18144 * 18 6 5 48 48 H 1.09003 * 109.58144 * 186.45727 * 18 6 5 49 49 H 1.09001 * 109.49741 * 294.68834 * 19 18 6 50 50 H 1.08991 * 109.50182 * 174.58845 * 19 18 6 51 51 H 0.96997 * 119.99780 * 334.99994 * 22 20 3 52 52 H 0.96995 * 120.00298 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6048 1.9827 0.8407 5 6 1.6385 2.1267 -1.3105 6 7 2.2451 3.4643 -1.3507 7 6 1.4857 4.5563 -1.5681 8 8 0.2988 4.4348 -1.8025 9 6 2.0947 5.8994 -1.5220 10 6 1.5235 6.9134 -0.7376 11 6 2.1216 8.1443 -0.7251 12 6 3.2714 8.3537 -1.4849 13 7 3.8795 9.5976 -1.4742 14 6 3.3798 10.6496 -0.5855 15 6 5.0226 9.8617 -2.3516 16 7 3.7915 7.3780 -2.2168 17 6 3.2506 6.1780 -2.2527 18 6 3.6952 3.5887 -1.1498 19 6 4.0737 2.8881 0.1589 20 6 3.5652 1.4450 0.1257 21 1 4.0009 0.9262 -0.7281 22 7 3.9542 0.7620 1.3621 23 6 5.1923 0.1863 1.4659 24 1 5.8819 0.2354 0.6362 25 6 5.5606 -0.4612 2.6372 26 7 4.7196 -0.5223 3.6478 27 14 7.2493 -1.2471 2.7785 28 1 7.3953 -1.8689 4.1191 29 1 7.4002 -2.2882 1.7304 30 1 8.2953 -0.2084 2.5986 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0278 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 1.9965 1.5377 -2.1549 37 1 0.5533 2.2160 -1.3585 38 1 0.6322 6.7266 -0.1570 39 1 1.7070 8.9457 -0.1315 40 1 3.8960 10.5913 0.3727 41 1 3.5624 11.6244 -1.0379 42 1 2.3092 10.5160 -0.4303 43 1 4.7226 9.7241 -3.3904 44 1 5.3640 10.8864 -2.2051 45 1 5.8313 9.1712 -2.1126 46 1 3.7024 5.4046 -2.8562 47 1 4.2209 3.1189 -1.9811 48 1 3.9673 4.6428 -1.0945 49 1 3.6192 3.4147 0.9981 50 1 5.1577 2.8894 0.2720 51 1 3.3347 0.7176 2.1072 52 1 4.9771 -0.9745 4.4664 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037871537.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:55:14 Heat of formation + Delta-G solvation = 27.709174 kcal Electronic energy + Delta-G solvation = -31096.193438 eV Core-core repulsion = 27096.266880 eV Total energy + Delta-G solvation = -3999.926558 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.93770 -39.66931 -37.75816 -36.71044 -34.70884 -33.77120 -32.78351 -31.71293 -31.02041 -29.47311 -28.65717 -28.51147 -26.23606 -24.82618 -23.97418 -23.49528 -22.80609 -21.91435 -20.79454 -20.02204 -19.20724 -17.75385 -17.46200 -17.07901 -16.72514 -16.04309 -15.64279 -15.03730 -14.99452 -14.90230 -14.60206 -14.27017 -13.95518 -13.70752 -13.50980 -13.39854 -13.29224 -13.18681 -12.97935 -12.95709 -12.74413 -12.62342 -12.54017 -12.21323 -12.02510 -11.76868 -11.56768 -11.26883 -10.91068 -10.85127 -10.68428 -10.39537 -10.26800 -10.21801 -10.14127 -10.03294 -9.91732 -9.69528 -9.57620 -9.44365 -8.88298 -8.44445 -7.83338 -6.95472 -5.76973 -3.05474 0.87836 1.17862 2.56590 2.77356 3.14560 3.42977 3.47889 3.48554 3.71555 4.18820 4.51831 4.57871 4.59870 4.70841 4.82511 4.88292 5.00078 5.02216 5.08147 5.25146 5.25853 5.29828 5.32010 5.40162 5.46864 5.50711 5.53847 5.59120 5.63227 5.71140 5.71948 5.72750 5.90048 6.01453 6.05082 6.15608 6.18359 6.22712 6.36003 6.38659 6.42546 6.48827 6.52977 6.60621 6.71122 6.85672 6.98171 6.99831 7.08408 7.54395 7.68774 7.84173 8.26780 8.41336 9.52702 10.10370 10.45330 11.45457 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010848 B = 0.002837 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2580.585258 B = 9866.008781 C =11677.967732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.104 4.104 4 H 0.069 0.931 5 C 0.120 3.880 6 N -0.599 5.599 7 C 0.570 3.430 8 O -0.547 6.547 9 C -0.237 4.237 10 C 0.015 3.985 11 C -0.243 4.243 12 C 0.414 3.586 13 N -0.614 5.614 14 C 0.092 3.908 15 C 0.103 3.897 16 N -0.542 5.542 17 C 0.184 3.816 18 C 0.099 3.901 19 C -0.150 4.150 20 C 0.184 3.816 21 H 0.048 0.952 22 N -0.720 5.720 23 C -0.238 4.238 24 H 0.069 0.931 25 C -0.012 4.012 26 N -0.932 5.932 27 Si 0.905 3.095 28 H -0.292 1.292 29 H -0.286 1.286 30 H -0.287 1.287 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.057 0.943 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.091 0.909 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.055 0.945 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.057 0.943 44 H 0.069 0.931 45 H 0.061 0.939 46 H 0.162 0.838 47 H 0.069 0.931 48 H 0.081 0.919 49 H 0.059 0.941 50 H 0.075 0.925 51 H 0.384 0.616 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.581 19.868 -11.430 23.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.124 4.124 4 H 0.088 0.912 5 C -0.002 4.002 6 N -0.331 5.331 7 C 0.358 3.642 8 O -0.425 6.425 9 C -0.245 4.245 10 C -0.011 4.011 11 C -0.267 4.267 12 C 0.179 3.821 13 N -0.326 5.326 14 C -0.051 4.051 15 C -0.039 4.039 16 N -0.259 5.259 17 C 0.025 3.975 18 C -0.024 4.024 19 C -0.191 4.191 20 C 0.073 3.927 21 H 0.066 0.934 22 N -0.360 5.360 23 C -0.369 4.369 24 H 0.087 0.913 25 C -0.208 4.208 26 N -0.581 5.581 27 Si 0.736 3.264 28 H -0.218 1.218 29 H -0.213 1.213 30 H -0.214 1.214 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.109 0.891 38 H 0.156 0.844 39 H 0.155 0.845 40 H 0.074 0.926 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.076 0.924 44 H 0.088 0.912 45 H 0.080 0.920 46 H 0.179 0.821 47 H 0.087 0.913 48 H 0.099 0.901 49 H 0.077 0.923 50 H 0.094 0.906 51 H 0.218 0.782 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.184 20.079 -12.030 23.778 hybrid contribution 0.233 -0.556 1.012 1.178 sum -3.952 19.523 -11.018 22.763 Atomic orbital electron populations 1.21845 0.96826 1.01024 1.01308 1.21450 0.94360 0.95684 1.03477 1.21779 0.97665 0.96253 0.96716 0.91230 1.21770 0.99412 0.81228 0.97837 1.48091 1.08610 1.06599 1.69775 1.18009 0.85893 0.83785 0.76494 1.90757 1.15470 1.86694 1.49609 1.20543 1.00969 0.95920 1.07106 1.21003 0.96759 0.90535 0.92773 1.21104 0.98849 0.99325 1.07454 1.18446 0.88250 0.85887 0.89541 1.46160 1.33812 1.09146 1.43527 1.21805 1.00188 0.89637 0.93505 1.21550 0.87897 1.00757 0.93738 1.67257 1.33900 1.00682 1.24061 1.22666 0.89364 0.92279 0.93187 1.22116 0.79393 1.01567 0.99342 1.22665 1.02155 0.99178 0.95119 1.20191 0.90784 0.90513 0.91184 0.93399 1.42402 1.16408 1.64474 1.12733 1.19169 0.91798 1.27337 0.98576 0.91302 1.24717 0.98093 1.01568 0.96462 1.69644 1.35229 1.48416 1.04775 0.86308 0.84210 0.79188 0.76713 1.21788 1.21312 1.21352 0.93021 0.93181 0.93188 0.92433 0.89793 0.91547 0.89105 0.84388 0.84501 0.92615 0.90857 0.90831 0.92427 0.91235 0.92014 0.82098 0.91264 0.90082 0.92265 0.90633 0.78217 0.93498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.67 37.16 0.36 -1.77 16 2 C -0.11 -1.81 5.31 -26.73 -0.14 -1.95 16 3 C -0.10 -1.71 1.92 -90.51 -0.17 -1.88 16 4 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 5 C 0.12 1.76 5.32 -3.71 -0.02 1.74 16 6 N -0.60 -8.67 2.97 -174.00 -0.52 -9.18 16 7 C 0.57 8.71 7.25 -12.47 -0.09 8.62 16 8 O -0.55 -9.92 16.48 5.29 0.09 -9.84 16 9 C -0.24 -3.13 5.02 -104.82 -0.53 -3.66 16 10 C 0.02 0.18 9.83 -39.29 -0.39 -0.20 16 11 C -0.24 -2.51 9.20 -39.65 -0.36 -2.87 16 12 C 0.41 4.62 7.36 -155.28 -1.14 3.48 16 13 N -0.61 -5.33 3.37 -189.71 -0.64 -5.97 16 14 C 0.09 0.49 10.24 59.85 0.61 1.10 16 15 C 0.10 0.75 10.16 59.84 0.61 1.35 16 16 N -0.54 -6.67 9.54 -12.14 -0.12 -6.79 16 17 C 0.18 2.23 8.54 -17.13 -0.15 2.08 16 18 C 0.10 1.34 5.38 -3.71 -0.02 1.32 16 19 C -0.15 -2.54 5.66 -26.61 -0.15 -2.69 16 20 C 0.18 3.44 2.19 -67.88 -0.15 3.29 16 21 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 22 N -0.72 -17.13 4.33 -53.38 -0.23 -17.36 16 23 C -0.24 -6.32 9.93 -15.06 -0.15 -6.47 16 24 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 25 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 26 N -0.93 -27.59 13.06 55.49 0.72 -26.86 16 27 Si 0.90 22.01 29.55 -169.99 -5.02 16.99 16 28 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 29 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 30 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.65 6.70 -51.93 -0.35 0.30 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.08 1.62 7.22 -51.92 -0.37 1.25 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.09 1.39 5.75 -51.93 -0.30 1.09 16 38 H 0.14 1.51 8.06 -52.48 -0.42 1.09 16 39 H 0.14 1.04 5.99 -52.48 -0.31 0.73 16 40 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.07 0.25 7.92 -51.93 -0.41 -0.16 16 42 H 0.07 0.34 5.95 -51.93 -0.31 0.03 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.32 7.79 -51.93 -0.40 -0.08 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.16 1.68 7.05 -52.49 -0.37 1.31 16 47 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 48 H 0.08 1.02 4.54 -51.93 -0.24 0.78 16 49 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 50 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 51 H 0.38 9.89 7.51 -40.82 -0.31 9.59 16 52 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 407.37 15.07 6.14 6.14 Total: -1.00 -32.51 407.37 -9.97 -42.47 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -8.41 Total: 9.34 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -1.98 Total: 1.05 kcal Atomic # 7 Polarization: -65.38 SS G_CDS: -0.78 Total: -66.16 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.09 Total: -9.84 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.51 -9.97 -42.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037871537.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.184 kcal (2) G-P(sol) polarization free energy of solvation -32.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds