Wall clock time and date at job start Wed Apr 1 2020 05:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47207 * 2 1 4 4 H 1.08998 * 109.51927 * 305.07650 * 3 2 1 5 5 C 1.53189 * 109.49939 * 65.16042 * 3 2 1 6 6 N 1.46923 * 108.77527 * 174.58617 * 5 3 2 7 7 C 1.34781 * 120.62743 * 126.41151 * 6 5 3 8 8 O 1.21586 * 120.00513 * 354.17061 * 7 6 5 9 9 C 1.47544 * 119.99585 * 174.16626 * 7 6 5 10 10 C 1.40347 * 120.47562 * 319.07080 * 9 7 6 11 11 C 1.36858 * 118.49133 * 180.02562 * 10 9 7 12 12 C 1.39392 * 119.38091 * 0.02562 * 11 10 9 13 13 N 1.38456 * 119.54322 * 179.97438 * 12 11 10 14 14 C 1.46498 * 119.99553 * 5.00271 * 13 12 11 15 15 C 1.46499 * 120.00292 * 184.99489 * 13 12 11 16 16 N 1.32608 * 120.92070 * 0.02562 * 12 11 10 17 17 C 1.31682 * 121.63419 * 359.69367 * 16 12 11 18 18 C 1.46918 * 118.73888 * 306.39257 * 6 5 3 19 19 C 1.53191 * 108.76799 * 53.61681 * 18 6 5 20 20 C 1.53034 * 109.49619 * 184.99929 * 3 2 1 21 21 H 1.09004 * 109.46419 * 298.69023 * 20 3 2 22 22 N 1.46506 * 109.46187 * 58.66020 * 20 3 2 23 23 C 1.36935 * 120.00013 * 205.02328 * 22 20 3 24 24 H 1.07998 * 119.99957 * 0.02562 * 23 22 20 25 25 C 1.38808 * 119.99815 * 179.97438 * 23 22 20 26 26 N 1.31623 * 120.00132 * 180.02562 * 25 23 22 27 27 Si 1.86803 * 120.00106 * 0.02562 * 25 23 22 28 28 H 1.48507 * 109.47105 * 89.99975 * 27 25 23 29 29 H 1.48499 * 109.47137 * 329.99977 * 27 25 23 30 30 H 1.48496 * 109.47211 * 209.99783 * 27 25 23 31 31 H 1.08995 * 109.46996 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46957 * 300.00590 * 1 2 3 33 33 H 1.09003 * 109.46907 * 60.00165 * 1 2 3 34 34 H 1.08997 * 109.47184 * 239.99490 * 2 1 3 35 35 H 1.09003 * 109.46907 * 119.99835 * 2 1 3 36 36 H 1.09003 * 109.58805 * 294.37737 * 5 3 2 37 37 H 1.09001 * 109.58821 * 54.79620 * 5 3 2 38 38 H 1.07998 * 120.75784 * 0.02562 * 10 9 7 39 39 H 1.08002 * 120.31054 * 179.97438 * 11 10 9 40 40 H 1.09004 * 109.47264 * 89.99943 * 14 13 12 41 41 H 1.09000 * 109.46989 * 209.99124 * 14 13 12 42 42 H 1.09001 * 109.47405 * 329.99578 * 14 13 12 43 43 H 1.09006 * 109.46691 * 90.00428 * 15 13 12 44 44 H 1.08999 * 109.47216 * 210.00270 * 15 13 12 45 45 H 1.09000 * 109.47084 * 330.00760 * 15 13 12 46 46 H 1.08003 * 119.73846 * 180.29138 * 17 16 12 47 47 H 1.09007 * 109.58617 * 173.39400 * 18 6 5 48 48 H 1.09005 * 109.58944 * 293.81690 * 18 6 5 49 49 H 1.09004 * 109.48621 * 185.39954 * 19 18 6 50 50 H 1.09003 * 109.50984 * 65.29890 * 19 18 6 51 51 H 0.96999 * 119.99832 * 25.02729 * 22 20 3 52 52 H 0.96998 * 119.99846 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6049 1.9827 -0.8408 5 6 1.6386 2.1268 1.3104 6 7 2.2452 3.4644 1.3506 7 6 1.4858 4.5565 1.5680 8 8 0.2758 4.4537 1.6274 9 6 2.1230 5.8769 1.7338 10 6 3.3014 6.0093 2.4845 11 6 3.8577 7.2532 2.6125 12 6 3.2429 8.3436 1.9993 13 7 3.8025 9.6036 2.1270 14 6 5.0889 9.7680 2.8084 15 6 3.1084 10.7722 1.5805 16 7 2.1290 8.1912 1.2961 17 6 1.5643 7.0114 1.1438 18 6 3.6953 3.5887 1.1497 19 6 4.0734 2.8882 -0.1590 20 6 3.5652 1.4450 -0.1257 21 1 4.0009 0.9262 0.7282 22 7 3.9542 0.7619 -1.3620 23 6 5.1921 0.1857 -1.4655 24 1 5.8815 0.2345 -0.6357 25 6 5.5604 -0.4619 -2.6367 26 7 6.7501 -1.0162 -2.7361 27 14 4.3677 -0.5469 -4.0719 28 1 4.5691 0.6312 -4.9533 29 1 2.9744 -0.5483 -3.5581 30 1 4.6114 -1.7910 -4.8451 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5140 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 0.5533 2.2161 1.3585 37 1 1.9965 1.5378 2.1549 38 1 3.7589 5.1492 2.9506 39 1 4.7641 7.3888 3.1839 40 1 5.8980 9.6818 2.0831 41 1 5.1272 10.7499 3.2803 42 1 5.1987 8.9949 3.5689 43 1 2.4461 11.1891 2.3394 44 1 3.8401 11.5238 1.2843 45 1 2.5223 10.4732 0.7115 46 1 0.6597 6.9217 0.5607 47 1 3.9671 4.6428 1.0917 48 1 4.2210 3.1190 1.9811 49 1 5.1576 2.8897 -0.2722 50 1 3.6188 3.4146 -0.9983 51 1 3.3349 0.7178 -2.1073 52 1 7.0076 -1.4684 -3.5547 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037871538.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:55:21 Heat of formation + Delta-G solvation = 32.575549 kcal Electronic energy + Delta-G solvation = -31119.762571 eV Core-core repulsion = 27120.047035 eV Total energy + Delta-G solvation = -3999.715536 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.98983 -39.74978 -37.87503 -36.71130 -34.92588 -33.92844 -32.84677 -31.77108 -30.93550 -29.89374 -28.88242 -28.58285 -26.32872 -24.95028 -24.14359 -23.29079 -22.79610 -21.82043 -20.82177 -20.17315 -19.43857 -17.79677 -17.60046 -17.28144 -16.78451 -16.07128 -15.70533 -15.17738 -15.01729 -14.91581 -14.58687 -14.28896 -14.22468 -13.75188 -13.66899 -13.57568 -13.33848 -13.27743 -13.03822 -12.85695 -12.74203 -12.63763 -12.48037 -12.37332 -12.24626 -11.92841 -11.78544 -11.40002 -11.03796 -11.02934 -10.79473 -10.41386 -10.34103 -10.30567 -10.20472 -10.00532 -9.93863 -9.73665 -9.58867 -9.52741 -8.92802 -8.52185 -7.88390 -7.28132 -5.79450 -3.14588 0.82346 1.10991 2.52764 2.77846 3.08533 3.36083 3.39735 3.44628 3.71098 4.17845 4.47813 4.56229 4.57298 4.68692 4.78544 4.83721 4.94055 4.97982 5.00617 5.07287 5.18290 5.23061 5.24346 5.26483 5.37830 5.47645 5.49131 5.51858 5.52980 5.60572 5.61796 5.68995 5.80134 5.90741 5.93768 6.02756 6.05308 6.11830 6.19246 6.26709 6.30625 6.35617 6.47408 6.51669 6.58401 6.72114 6.81846 6.95444 6.95893 7.47727 7.83129 7.96318 8.22204 8.39849 9.18251 9.91207 10.11308 11.38871 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012485 B = 0.002764 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.119957 B =10126.065056 C =11468.712893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.108 4.108 4 H 0.069 0.931 5 C 0.121 3.879 6 N -0.602 5.602 7 C 0.571 3.429 8 O -0.547 6.547 9 C -0.244 4.244 10 C 0.000 4.000 11 C -0.246 4.246 12 C 0.417 3.583 13 N -0.612 5.612 14 C 0.091 3.909 15 C 0.096 3.904 16 N -0.546 5.546 17 C 0.207 3.793 18 C 0.101 3.899 19 C -0.151 4.151 20 C 0.189 3.811 21 H 0.057 0.943 22 N -0.745 5.745 23 C -0.241 4.241 24 H 0.090 0.910 25 C 0.005 3.995 26 N -0.934 5.934 27 Si 0.881 3.119 28 H -0.285 1.285 29 H -0.276 1.276 30 H -0.292 1.292 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.092 0.908 37 H 0.068 0.932 38 H 0.141 0.859 39 H 0.138 0.862 40 H 0.056 0.944 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.049 0.951 44 H 0.064 0.936 45 H 0.082 0.918 46 H 0.163 0.837 47 H 0.084 0.916 48 H 0.069 0.931 49 H 0.080 0.920 50 H 0.058 0.942 51 H 0.361 0.639 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.662 19.863 13.189 24.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.128 4.128 4 H 0.088 0.912 5 C -0.002 4.002 6 N -0.334 5.334 7 C 0.360 3.640 8 O -0.425 6.425 9 C -0.252 4.252 10 C -0.026 4.026 11 C -0.270 4.270 12 C 0.181 3.819 13 N -0.325 5.325 14 C -0.052 4.052 15 C -0.047 4.047 16 N -0.263 5.263 17 C 0.047 3.953 18 C -0.022 4.022 19 C -0.192 4.192 20 C 0.079 3.921 21 H 0.075 0.925 22 N -0.387 5.387 23 C -0.371 4.371 24 H 0.108 0.892 25 C -0.190 4.190 26 N -0.582 5.582 27 Si 0.712 3.288 28 H -0.212 1.212 29 H -0.202 1.202 30 H -0.218 1.218 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.111 0.889 37 H 0.086 0.914 38 H 0.159 0.841 39 H 0.156 0.844 40 H 0.075 0.925 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.067 0.933 44 H 0.083 0.917 45 H 0.101 0.899 46 H 0.180 0.820 47 H 0.102 0.898 48 H 0.087 0.913 49 H 0.099 0.901 50 H 0.077 0.923 51 H 0.194 0.806 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.322 20.626 12.902 25.407 hybrid contribution -0.112 -0.796 -0.836 1.160 sum -7.434 19.830 12.066 24.374 Atomic orbital electron populations 1.21853 0.96623 1.01132 1.01485 1.21466 0.94563 0.95703 1.03395 1.21826 0.97561 0.96270 0.97173 0.91224 1.21736 0.99583 0.81289 0.97577 1.48053 1.08611 1.06571 1.70149 1.18005 0.86292 0.83514 0.76229 1.90758 1.13738 1.86040 1.52008 1.20538 1.00205 0.95387 1.09035 1.21294 0.91488 0.97284 0.92491 1.21114 1.05070 0.92440 1.08373 1.18504 0.88963 0.85638 0.88759 1.46179 1.22030 1.03882 1.60364 1.21791 0.83617 1.02784 0.97027 1.21624 0.96943 0.86562 0.99587 1.67294 1.11464 1.26455 1.21121 1.22529 0.95939 0.85015 0.91780 1.22129 0.79443 1.01576 0.99080 1.22645 1.02541 0.98713 0.95330 1.20163 0.90729 0.90629 0.90588 0.92548 1.42781 1.16465 1.66291 1.13145 1.19041 0.90409 1.27206 1.00404 0.89222 1.24651 0.96421 1.00281 0.97689 1.69696 1.19340 1.41634 1.27515 0.86598 0.81208 0.77295 0.83703 1.21209 1.20228 1.21820 0.93088 0.92908 0.93071 0.90459 0.91965 0.88949 0.91424 0.84144 0.84424 0.92506 0.90848 0.90752 0.93273 0.91728 0.89924 0.81951 0.89833 0.91299 0.90118 0.92276 0.80608 0.93088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.68 37.16 0.36 -1.64 16 2 C -0.11 -1.72 5.31 -26.73 -0.14 -1.86 16 3 C -0.11 -1.67 1.92 -90.50 -0.17 -1.85 16 4 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 5 C 0.12 1.67 5.34 -3.71 -0.02 1.65 16 6 N -0.60 -8.21 2.97 -174.00 -0.52 -8.73 16 7 C 0.57 8.33 7.32 -12.46 -0.09 8.24 16 8 O -0.55 -9.55 16.37 5.29 0.09 -9.47 16 9 C -0.24 -3.05 5.10 -104.82 -0.53 -3.58 16 10 C 0.00 0.00 7.46 -39.29 -0.29 -0.29 16 11 C -0.25 -2.30 9.20 -39.65 -0.36 -2.67 16 12 C 0.42 4.46 7.36 -155.28 -1.14 3.31 16 13 N -0.61 -5.10 3.37 -189.70 -0.64 -5.74 16 14 C 0.09 0.46 10.27 59.85 0.61 1.07 16 15 C 0.10 0.67 10.49 59.85 0.63 1.30 16 16 N -0.55 -6.67 9.04 -12.14 -0.11 -6.78 16 17 C 0.21 2.58 10.82 -17.13 -0.19 2.39 16 18 C 0.10 1.26 4.94 -3.72 -0.02 1.25 16 19 C -0.15 -2.42 5.66 -26.61 -0.15 -2.57 16 20 C 0.19 3.36 2.19 -67.89 -0.15 3.21 16 21 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 22 N -0.75 -16.64 4.13 -53.38 -0.22 -16.86 16 23 C -0.24 -6.46 10.41 -15.06 -0.16 -6.62 16 24 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 25 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 26 N -0.93 -28.73 13.97 55.49 0.78 -27.96 16 27 Si 0.88 21.82 27.74 -169.99 -4.71 17.11 16 28 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 29 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 30 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.64 6.70 -51.93 -0.35 0.29 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 1.37 7.22 -51.93 -0.37 1.00 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.09 1.34 5.72 -51.93 -0.30 1.04 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.14 1.20 6.73 -52.49 -0.35 0.85 16 39 H 0.14 0.93 5.99 -52.49 -0.31 0.61 16 40 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 41 H 0.07 0.24 8.07 -51.93 -0.42 -0.17 16 42 H 0.07 0.32 5.95 -51.93 -0.31 0.01 16 43 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.06 0.32 8.07 -51.93 -0.42 -0.10 16 45 H 0.08 0.70 7.28 -51.93 -0.38 0.32 16 46 H 0.16 1.91 8.06 -52.48 -0.42 1.48 16 47 H 0.08 0.95 4.78 -51.92 -0.25 0.71 16 48 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 49 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 50 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 51 H 0.36 8.15 5.37 -40.82 -0.22 7.93 16 52 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 403.08 15.07 6.07 6.07 Total: -1.00 -33.39 403.08 -9.52 -42.91 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -8.34 Total: 8.04 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -1.92 Total: 1.40 kcal Atomic # 7 Polarization: -65.36 SS G_CDS: -0.71 Total: -66.07 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.09 Total: -9.47 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.71 Total: 17.11 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.39 -9.52 -42.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037871538.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.489 kcal (2) G-P(sol) polarization free energy of solvation -33.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds