Wall clock time and date at job start Wed Apr 1 2020 05:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46672 * 2 1 4 4 H 1.09003 * 109.52269 * 305.07841 * 3 2 1 5 5 C 1.53194 * 109.50262 * 65.16357 * 3 2 1 6 6 N 1.46920 * 108.77775 * 174.58913 * 5 3 2 7 7 C 1.34773 * 120.63346 * 126.41439 * 6 5 3 8 8 O 1.21566 * 120.00028 * 353.06284 * 7 6 5 9 9 C 1.47711 * 119.99879 * 173.07243 * 7 6 5 10 10 N 1.32211 * 126.67945 * 353.98918 * 9 7 6 11 11 N 1.28840 * 110.14969 * 179.97438 * 10 9 7 12 12 H 0.97004 * 124.97652 * 179.97438 * 11 10 9 13 13 C 1.34312 * 110.04309 * 359.93797 * 11 10 9 14 14 C 1.35578 * 107.21829 * 359.85043 * 13 11 10 15 15 C 1.50388 * 124.62013 * 179.38605 * 14 13 11 16 16 C 1.53480 * 108.34651 * 344.33932 * 15 14 13 17 17 C 1.53106 * 109.50768 * 49.24546 * 16 15 14 18 18 C 1.50712 * 128.90283 * 180.20715 * 13 11 10 19 19 C 1.46940 * 118.73512 * 306.38727 * 6 5 3 20 20 C 1.53194 * 108.77290 * 53.61270 * 19 6 5 21 21 C 1.53035 * 109.31237 * 305.36355 * 20 19 6 22 22 H 1.08998 * 109.46190 * 181.37668 * 21 20 19 23 23 N 1.46503 * 109.45986 * 301.34417 * 21 20 19 24 24 C 1.36936 * 120.00400 * 275.00200 * 23 21 20 25 25 H 1.08004 * 119.99622 * 0.02562 * 24 23 21 26 26 C 1.38810 * 120.00165 * 180.02562 * 24 23 21 27 27 N 1.31619 * 120.00129 * 359.97438 * 26 24 23 28 28 Si 1.86803 * 119.99895 * 180.02562 * 26 24 23 29 29 H 1.48501 * 109.47195 * 59.99577 * 28 26 24 30 30 H 1.48504 * 109.47028 * 299.99397 * 28 26 24 31 31 H 1.48496 * 109.46905 * 179.97438 * 28 26 24 32 32 H 1.09003 * 109.47176 * 300.00072 * 1 2 3 33 33 H 1.08999 * 109.47276 * 60.00288 * 1 2 3 34 34 H 1.09006 * 109.46991 * 180.02562 * 1 2 3 35 35 H 1.08993 * 109.47155 * 239.99973 * 2 1 3 36 36 H 1.08999 * 109.47276 * 119.99712 * 2 1 3 37 37 H 1.09000 * 109.58567 * 54.79649 * 5 3 2 38 38 H 1.09004 * 109.69942 * 294.44337 * 5 3 2 39 39 H 1.08993 * 109.86160 * 224.50724 * 15 14 13 40 40 H 1.08996 * 109.50527 * 103.96312 * 15 14 13 41 41 H 1.09006 * 109.46085 * 289.23604 * 16 15 14 42 42 H 1.08991 * 109.45797 * 169.25585 * 16 15 14 43 43 H 1.08997 * 109.43985 * 169.88310 * 17 16 15 44 44 H 1.09009 * 109.44090 * 49.99533 * 17 16 15 45 45 H 1.08999 * 109.69388 * 283.01643 * 18 13 11 46 46 H 1.09001 * 109.69301 * 43.55931 * 18 13 11 47 47 H 1.08992 * 109.58649 * 293.82248 * 19 6 5 48 48 H 1.08997 * 109.58027 * 173.39760 * 19 6 5 49 49 H 1.08999 * 109.49237 * 185.41216 * 20 19 6 50 50 H 1.08997 * 109.52152 * 65.33376 * 20 19 6 51 51 H 0.97000 * 119.99584 * 95.00572 * 23 21 20 52 52 H 0.97002 * 119.99655 * 0.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6046 1.9827 -0.8408 5 6 1.6385 2.1269 1.3105 6 7 2.2449 3.4645 1.3506 7 6 1.4855 4.5565 1.5680 8 8 0.2746 4.4568 1.6076 9 6 2.1247 5.8745 1.7581 10 7 3.4209 6.1176 1.8510 11 7 3.6254 7.3794 2.0124 12 1 4.4974 7.7940 2.1054 13 6 2.4542 8.0367 2.0323 14 6 1.4737 7.1147 1.8692 15 6 0.0028 7.4268 1.8448 16 6 -0.2014 8.8367 2.4160 17 6 0.7660 9.8090 1.7356 18 6 2.2004 9.5137 2.1922 19 6 3.6952 3.5889 1.1497 20 6 4.0735 2.8883 -0.1590 21 6 3.5651 1.4452 -0.1258 22 1 3.8543 0.9370 -1.0457 23 7 4.1507 0.7477 1.0218 24 6 5.3880 0.1708 0.9140 25 1 5.9323 0.2304 -0.0170 26 6 5.9425 -0.4905 2.0011 27 7 5.2794 -0.5627 3.1358 28 14 7.6306 -1.2768 1.8543 29 1 8.6342 -0.2353 1.5177 30 1 7.6061 -2.3052 0.7832 31 1 7.9936 -1.9146 3.1452 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 1.8933 -0.5138 -0.8899 36 1 1.8934 -0.5138 0.8900 37 1 1.9965 1.5378 2.1549 38 1 0.5533 2.2160 1.3611 39 1 -0.5396 6.7022 2.4520 40 1 -0.3600 7.3904 0.8177 41 1 -0.0099 8.8250 3.4890 42 1 -1.2269 9.1573 2.2335 43 1 0.5024 10.8315 2.0058 44 1 0.6980 9.6911 0.6540 45 1 2.3180 9.7954 3.2385 46 1 2.9047 10.0759 1.5790 47 1 4.2208 3.1192 1.9810 48 1 3.9668 4.6429 1.0917 49 1 5.1576 2.8896 -0.2720 50 1 3.6195 3.4148 -0.9985 51 1 3.6620 0.6945 1.8579 52 1 4.4030 -0.1540 3.2121 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037878426.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:53:26 Heat of formation + Delta-G solvation = 41.528509 kcal Electronic energy + Delta-G solvation = -32036.790697 eV Core-core repulsion = 28037.463390 eV Total energy + Delta-G solvation = -3999.327307 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.96372 -39.79823 -37.71626 -37.14700 -34.43900 -33.91406 -32.71897 -31.71268 -30.15025 -29.92820 -29.16844 -28.21986 -25.53360 -24.06820 -23.65905 -23.42151 -22.94472 -22.32345 -20.78532 -19.46971 -19.24351 -18.38976 -17.88121 -17.21407 -16.56289 -16.14774 -15.70184 -15.03798 -14.97995 -14.65608 -14.28590 -14.08624 -13.91890 -13.72855 -13.61120 -13.40949 -13.27754 -13.26095 -13.24945 -12.86426 -12.61745 -12.33145 -12.15056 -11.77441 -11.50813 -11.27897 -11.13185 -11.07830 -11.01684 -10.85558 -10.72589 -10.52197 -10.38297 -10.20709 -10.03466 -9.93484 -9.79159 -9.61837 -9.34721 -9.10745 -8.85916 -8.71970 -8.14915 -6.97400 -6.05413 -3.04708 1.57359 1.99839 2.67351 3.33265 3.52864 3.55765 3.56092 3.73625 4.25004 4.37418 4.54082 4.58759 4.70177 4.92194 5.02117 5.04598 5.17710 5.21805 5.27609 5.30459 5.34802 5.40590 5.58358 5.60246 5.64318 5.67522 5.69896 5.75297 5.81481 5.83201 5.87782 5.89006 5.93941 6.08708 6.10643 6.14125 6.17626 6.28675 6.33650 6.38769 6.42565 6.52024 6.58928 6.67453 6.75133 6.80005 6.91296 6.94797 7.10866 7.69064 7.85317 7.87776 8.43649 8.79450 9.27110 10.13504 10.29692 11.42511 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013685 B = 0.003101 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.505528 B = 9027.942801 C =10471.684533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.104 4.104 4 H 0.068 0.932 5 C 0.120 3.880 6 N -0.588 5.588 7 C 0.597 3.403 8 O -0.544 6.544 9 C 0.004 3.996 10 N -0.253 5.253 11 N -0.379 5.379 12 H 0.443 0.557 13 C 0.008 3.992 14 C -0.145 4.145 15 C -0.042 4.042 16 C -0.121 4.121 17 C -0.114 4.114 18 C -0.047 4.047 19 C 0.096 3.904 20 C -0.147 4.147 21 C 0.184 3.816 22 H 0.050 0.950 23 N -0.729 5.729 24 C -0.325 4.325 25 H 0.063 0.937 26 C -0.045 4.045 27 N -0.945 5.945 28 Si 1.077 2.923 29 H -0.297 1.297 30 H -0.297 1.297 31 H -0.286 1.286 32 H 0.053 0.947 33 H 0.048 0.952 34 H 0.050 0.950 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.075 0.925 48 H 0.114 0.886 49 H 0.072 0.928 50 H 0.045 0.955 51 H 0.366 0.634 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.580 20.830 -4.081 22.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.147 4.147 3 C -0.124 4.124 4 H 0.086 0.914 5 C -0.002 4.002 6 N -0.319 5.319 7 C 0.384 3.616 8 O -0.421 6.421 9 C -0.155 4.155 10 N -0.089 5.089 11 N -0.090 5.090 12 H 0.287 0.713 13 C -0.120 4.120 14 C -0.155 4.155 15 C -0.080 4.080 16 C -0.158 4.158 17 C -0.152 4.152 18 C -0.086 4.086 19 C -0.027 4.027 20 C -0.189 4.189 21 C 0.074 3.926 22 H 0.068 0.932 23 N -0.373 5.373 24 C -0.456 4.456 25 H 0.081 0.919 26 C -0.243 4.243 27 N -0.590 5.590 28 Si 0.909 3.091 29 H -0.225 1.225 30 H -0.224 1.224 31 H -0.212 1.212 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.087 0.913 45 H 0.100 0.900 46 H 0.096 0.904 47 H 0.094 0.906 48 H 0.131 0.869 49 H 0.090 0.910 50 H 0.064 0.936 51 H 0.201 0.799 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.907 19.315 -3.440 20.799 hybrid contribution -1.117 1.364 -0.608 1.865 sum -8.024 20.679 -4.048 22.548 Atomic orbital electron populations 1.21853 0.96665 1.01048 1.01461 1.21402 0.94392 0.95722 1.03158 1.21765 0.97461 0.96057 0.97100 0.91396 1.21693 0.98888 0.81510 0.98109 1.47977 1.09328 1.05954 1.68618 1.16967 0.85830 0.81810 0.77027 1.90725 1.13055 1.85253 1.53048 1.21665 0.89457 0.95170 1.09197 1.73895 1.18374 0.96843 1.19782 1.43222 1.08863 1.04625 1.52326 0.71288 1.21148 0.85948 0.96593 1.08265 1.19849 0.96864 0.90450 1.08315 1.19977 0.89822 0.96294 1.01948 1.21669 0.99247 0.94647 1.00282 1.21559 0.93085 0.99431 1.01144 1.20222 0.98440 0.87530 1.02375 1.22375 0.78202 1.03349 0.98785 1.22495 1.01582 0.98874 0.95916 1.20164 0.89529 0.90747 0.92187 0.93247 1.42460 1.19453 1.65084 1.10267 1.20008 0.94762 1.31272 0.99545 0.91942 1.25666 1.05528 1.00332 0.92757 1.70886 1.14559 1.47756 1.25824 0.83270 0.74715 0.75836 0.75298 1.22452 1.22417 1.21195 0.92756 0.93249 0.93138 0.91981 0.90933 0.91241 0.89368 0.89616 0.90818 0.91704 0.91216 0.90981 0.91325 0.89952 0.90365 0.90631 0.86937 0.90963 0.93607 0.79898 0.93505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.68 37.16 0.36 -1.80 16 2 C -0.11 -1.81 5.19 -26.73 -0.14 -1.95 16 3 C -0.10 -1.80 2.14 -90.50 -0.19 -1.99 16 4 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 5 C 0.12 2.16 5.04 -3.71 -0.02 2.14 16 6 N -0.59 -10.64 2.97 -173.93 -0.52 -11.15 16 7 C 0.60 10.83 7.69 -12.39 -0.10 10.73 16 8 O -0.54 -10.59 15.18 5.31 0.08 -10.51 16 9 C 0.00 0.07 6.82 -82.98 -0.57 -0.50 16 10 N -0.25 -3.67 8.74 33.28 0.29 -3.38 16 11 N -0.38 -3.99 6.82 33.42 0.23 -3.76 16 12 H 0.44 2.99 8.96 -190.21 -1.71 1.28 16 13 C 0.01 0.08 7.12 -82.45 -0.59 -0.51 16 14 C -0.14 -1.91 5.99 -104.87 -0.63 -2.53 16 15 C -0.04 -0.48 5.59 -27.79 -0.16 -0.64 16 16 C -0.12 -0.95 5.91 -26.43 -0.16 -1.11 16 17 C -0.11 -0.72 5.88 -26.47 -0.16 -0.88 16 18 C -0.05 -0.30 6.31 -27.67 -0.17 -0.47 16 19 C 0.10 1.75 5.87 -3.70 -0.02 1.73 16 20 C -0.15 -2.72 5.78 -26.61 -0.15 -2.87 16 21 C 0.18 3.66 2.53 -67.89 -0.17 3.49 16 22 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 23 N -0.73 -17.42 3.72 -53.39 -0.20 -17.62 16 24 C -0.32 -8.83 9.93 -15.06 -0.15 -8.98 16 25 H 0.06 1.69 7.83 -52.48 -0.41 1.28 16 26 C -0.05 -1.29 5.50 -17.43 -0.10 -1.39 16 27 N -0.94 -28.87 13.70 55.49 0.76 -28.11 16 28 Si 1.08 25.83 29.92 -169.99 -5.09 20.75 16 29 H -0.30 -6.82 7.11 56.52 0.40 -6.42 16 30 H -0.30 -6.83 7.11 56.52 0.40 -6.43 16 31 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 32 H 0.05 0.76 6.70 -51.93 -0.35 0.42 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 1.38 7.70 -51.93 -0.40 0.98 16 37 H 0.07 1.35 6.64 -51.93 -0.34 1.01 16 38 H 0.09 1.55 5.72 -51.93 -0.30 1.26 16 39 H 0.09 1.12 7.58 -51.93 -0.39 0.72 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.06 0.52 8.12 -51.93 -0.42 0.09 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.07 0.47 8.12 -51.92 -0.42 0.04 16 45 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.08 1.61 7.74 -51.93 -0.40 1.21 16 48 H 0.11 1.93 4.15 -71.20 -0.30 1.63 16 49 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 50 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 51 H 0.37 9.17 4.78 -40.82 -0.19 8.98 16 52 H 0.25 7.68 6.77 -40.82 -0.28 7.40 16 LS Contribution 393.78 15.07 5.93 5.93 Total: -1.00 -33.15 393.78 -11.39 -44.54 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: -9.78 Total: 10.86 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -3.10 Total: -7.54 kcal Atomic # 7 Polarization: -64.59 SS G_CDS: 0.56 Total: -64.03 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.08 Total: -10.51 kcal Atomic # 14 Polarization: 25.83 SS G_CDS: -5.09 Total: 20.75 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.15 -11.39 -44.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037878426.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.066 kcal (2) G-P(sol) polarization free energy of solvation -33.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds