Wall clock time and date at job start Wed Apr 1 2020 05:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46846 * 2 1 4 4 H 1.09002 * 109.49315 * 304.93223 * 3 2 1 5 5 C 1.53184 * 109.49811 * 65.00012 * 3 2 1 6 6 N 1.46933 * 108.77715 * 174.58527 * 5 3 2 7 7 C 1.34777 * 120.63118 * 126.36943 * 6 5 3 8 8 O 1.21574 * 119.99803 * 4.79944 * 7 6 5 9 9 C 1.47700 * 119.99824 * 184.80590 * 7 6 5 10 10 N 1.32212 * 126.68130 * 354.13234 * 9 7 6 11 11 N 1.28843 * 110.15047 * 179.97438 * 10 9 7 12 12 H 0.96999 * 124.97860 * 179.89898 * 11 10 9 13 13 C 1.34315 * 110.04633 * 359.92558 * 11 10 9 14 14 C 1.35584 * 107.21134 * 0.13887 * 13 11 10 15 15 C 1.50380 * 124.61881 * 179.75678 * 14 13 11 16 16 C 1.53480 * 108.28192 * 343.75392 * 15 14 13 17 17 C 1.53107 * 109.50487 * 49.49372 * 16 15 14 18 18 C 1.50712 * 128.90748 * 180.15950 * 13 11 10 19 19 C 1.46925 * 118.73504 * 306.64970 * 6 5 3 20 20 C 1.52752 * 109.01175 * 53.30387 * 19 6 5 21 21 C 1.53037 * 109.38653 * 305.58718 * 20 19 6 22 22 H 1.08998 * 109.46154 * 301.22336 * 21 20 19 23 23 N 1.46500 * 109.46385 * 181.25796 * 21 20 19 24 24 C 1.36941 * 119.99633 * 84.93425 * 23 21 20 25 25 H 1.07995 * 120.00023 * 359.97438 * 24 23 21 26 26 C 1.38811 * 119.99971 * 180.02562 * 24 23 21 27 27 N 1.31621 * 119.99890 * 359.97438 * 26 24 23 28 28 Si 1.86799 * 120.00132 * 179.97438 * 26 24 23 29 29 H 1.48500 * 109.47181 * 60.00048 * 28 26 24 30 30 H 1.48502 * 109.47286 * 179.97438 * 28 26 24 31 31 H 1.48493 * 109.47263 * 299.99685 * 28 26 24 32 32 H 1.09004 * 109.46745 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47133 * 300.00033 * 1 2 3 34 34 H 1.08998 * 109.47380 * 59.99850 * 1 2 3 35 35 H 1.08995 * 109.47123 * 240.00430 * 2 1 3 36 36 H 1.08993 * 109.47360 * 119.99669 * 2 1 3 37 37 H 1.09005 * 109.58828 * 54.80204 * 5 3 2 38 38 H 1.09001 * 109.70651 * 294.44171 * 5 3 2 39 39 H 1.09000 * 109.70181 * 103.45238 * 15 14 13 40 40 H 1.09000 * 109.69799 * 224.05793 * 15 14 13 41 41 H 1.08999 * 109.46227 * 169.50217 * 16 15 14 42 42 H 1.08997 * 109.46439 * 289.48304 * 16 15 14 43 43 H 1.09010 * 109.43656 * 169.89134 * 17 16 15 44 44 H 1.08990 * 109.44593 * 49.99831 * 17 16 15 45 45 H 1.08999 * 109.68712 * 283.06199 * 18 13 11 46 46 H 1.08994 * 109.68919 * 43.64010 * 18 13 11 47 47 H 1.09003 * 109.58195 * 173.14063 * 19 6 5 48 48 H 1.09000 * 109.58283 * 293.56302 * 19 6 5 49 49 H 1.09000 * 109.56610 * 185.55345 * 20 19 6 50 50 H 1.09001 * 109.36161 * 65.49808 * 20 19 6 51 51 H 0.96996 * 120.00345 * 264.93545 * 23 21 20 52 52 H 0.97000 * 119.99959 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6065 1.9816 -0.8424 5 6 1.6350 2.1280 1.3087 6 7 2.2414 3.4658 1.3493 7 6 1.4814 4.5581 1.5628 8 8 0.2975 4.4358 1.8107 9 6 2.0868 5.9036 1.4956 10 7 3.3696 6.1859 1.3448 11 7 3.5442 7.4623 1.3277 12 1 4.4017 7.9050 1.2291 13 6 2.3651 8.0902 1.4671 14 6 1.4116 7.1329 1.5792 15 6 -0.0564 7.4060 1.7578 16 6 -0.2246 8.8679 2.1939 17 6 0.5781 9.7760 1.2583 18 6 2.0786 9.5695 1.5011 19 6 3.6913 3.5905 1.1465 20 6 4.0739 2.8881 -0.1549 21 6 3.5655 1.4450 -0.1218 22 1 3.9989 0.9269 0.7337 23 7 3.9577 0.7609 -1.3564 24 6 5.1961 0.1851 -1.4563 25 1 5.8838 0.2357 -0.6252 26 6 5.5680 -0.4628 -2.6263 27 7 4.7300 -0.5240 -3.6395 28 14 7.2576 -1.2476 -2.7629 29 1 7.4063 -2.2882 -1.7140 30 1 7.4070 -1.8710 -4.1025 31 1 8.3024 -0.2083 -2.5809 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8899 35 1 1.8933 -0.5137 -0.8900 36 1 1.8934 -0.5137 0.8899 37 1 1.9908 1.5398 2.1546 38 1 0.5497 2.2173 1.3563 39 1 -0.5782 7.2414 0.8150 40 1 -0.4626 6.7450 2.5235 41 1 -1.2788 9.1412 2.1492 42 1 0.1383 8.9864 3.2148 43 1 0.3190 10.8169 1.4528 44 1 0.3409 9.5309 0.2232 45 1 2.3522 9.9742 2.4755 46 1 2.6496 10.0721 0.7206 47 1 3.9621 4.6445 1.0846 48 1 4.2181 3.1240 1.9789 49 1 5.1583 2.8893 -0.2651 50 1 3.6217 3.4139 -0.9958 51 1 3.3402 0.7158 -2.1031 52 1 4.9897 -0.9770 -4.4570 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037878427.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:53:30 Heat of formation + Delta-G solvation = 40.353849 kcal Electronic energy + Delta-G solvation = -31573.241883 eV Core-core repulsion = 27573.863640 eV Total energy + Delta-G solvation = -3999.378244 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.03238 -39.78052 -37.63860 -37.17810 -34.62357 -33.74772 -32.76896 -31.64207 -30.21473 -29.99340 -29.37432 -28.45820 -25.53000 -24.11280 -23.83302 -23.42727 -22.42058 -22.19831 -20.70894 -19.71596 -19.30179 -18.83783 -17.96721 -17.04391 -16.63505 -16.15691 -15.75641 -15.05055 -14.89024 -14.57448 -14.25269 -14.10556 -14.02789 -13.78366 -13.60769 -13.42627 -13.27059 -13.21360 -13.02033 -12.87930 -12.50551 -12.36545 -12.03881 -11.96011 -11.56439 -11.21464 -11.18626 -11.10228 -10.94239 -10.89037 -10.85454 -10.65422 -10.36342 -10.19408 -10.17025 -10.03243 -9.79082 -9.56954 -9.50931 -9.45102 -8.82695 -8.78873 -8.31068 -6.90228 -5.73377 -3.01346 1.49386 1.94394 2.59103 3.22164 3.44811 3.48990 3.50009 3.50465 4.19132 4.31582 4.49179 4.55903 4.61269 4.88190 4.97315 5.00696 5.14927 5.23262 5.26668 5.30164 5.35170 5.43356 5.55032 5.58280 5.62384 5.66958 5.68791 5.71086 5.76977 5.80324 5.85484 5.95371 5.96164 6.07528 6.08870 6.17103 6.22725 6.25572 6.37042 6.46415 6.48891 6.52606 6.56603 6.66829 6.77961 6.90327 6.96215 7.06490 7.17541 7.58635 7.72309 7.81067 8.34762 8.45215 9.56294 10.14952 10.50141 11.49199 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014777 B = 0.002747 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.362020 B =10191.930221 C =11489.344732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 C -0.104 4.104 4 H 0.069 0.931 5 C 0.120 3.880 6 N -0.590 5.590 7 C 0.599 3.401 8 O -0.541 6.541 9 C 0.007 3.993 10 N -0.258 5.258 11 N -0.378 5.378 12 H 0.443 0.557 13 C 0.011 3.989 14 C -0.144 4.144 15 C -0.043 4.043 16 C -0.121 4.121 17 C -0.115 4.115 18 C -0.047 4.047 19 C 0.074 3.926 20 C -0.146 4.146 21 C 0.182 3.818 22 H 0.047 0.953 23 N -0.721 5.721 24 C -0.235 4.235 25 H 0.069 0.931 26 C -0.014 4.014 27 N -0.933 5.933 28 Si 0.904 3.096 29 H -0.287 1.287 30 H -0.292 1.292 31 H -0.287 1.287 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.051 0.949 35 H 0.083 0.917 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.082 0.918 46 H 0.079 0.921 47 H 0.131 0.869 48 H 0.059 0.941 49 H 0.073 0.927 50 H 0.055 0.945 51 H 0.383 0.617 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.661 20.969 12.784 25.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.124 4.124 4 H 0.087 0.913 5 C -0.003 4.003 6 N -0.322 5.322 7 C 0.385 3.615 8 O -0.417 6.417 9 C -0.152 4.152 10 N -0.093 5.093 11 N -0.090 5.090 12 H 0.287 0.713 13 C -0.117 4.117 14 C -0.154 4.154 15 C -0.081 4.081 16 C -0.158 4.158 17 C -0.153 4.153 18 C -0.086 4.086 19 C -0.050 4.050 20 C -0.187 4.187 21 C 0.072 3.928 22 H 0.065 0.935 23 N -0.361 5.361 24 C -0.366 4.366 25 H 0.087 0.913 26 C -0.210 4.210 27 N -0.582 5.582 28 Si 0.736 3.264 29 H -0.213 1.213 30 H -0.218 1.218 31 H -0.214 1.214 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.102 0.898 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.109 0.891 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.101 0.899 46 H 0.097 0.903 47 H 0.148 0.852 48 H 0.078 0.922 49 H 0.091 0.909 50 H 0.074 0.926 51 H 0.217 0.783 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.103 20.268 12.805 25.005 hybrid contribution 0.904 0.011 -0.527 1.046 sum -6.200 20.280 12.278 24.504 Atomic orbital electron populations 1.21845 0.96829 1.00984 1.01324 1.21449 0.94353 0.95718 1.03432 1.21772 0.97730 0.96175 0.96687 0.91268 1.21785 0.99324 0.81318 0.97846 1.48005 1.09088 1.06122 1.68945 1.16975 0.85402 0.81975 0.77156 1.90740 1.15032 1.85880 1.50067 1.21657 0.89675 0.95003 1.08897 1.73576 1.19013 0.95676 1.21031 1.43245 1.09267 1.04032 1.52410 0.71278 1.21159 0.85985 0.96695 1.07821 1.19847 0.97124 0.90117 1.08318 1.19992 0.89705 0.95883 1.02552 1.21667 1.00218 0.94620 0.99312 1.21567 0.92960 0.99962 1.00823 1.20232 0.98067 0.87562 1.02752 1.22715 0.78515 1.05529 0.98244 1.22524 1.01842 0.98781 0.95595 1.20221 0.90731 0.90784 0.91046 0.93544 1.42407 1.16412 1.64496 1.12775 1.19177 0.91817 1.27109 0.98519 0.91348 1.24713 0.98086 1.01700 0.96468 1.69651 1.35297 1.48503 1.04719 0.86309 0.84274 0.79168 0.76672 1.21349 1.21801 1.21413 0.93213 0.93169 0.93007 0.89823 0.92470 0.91626 0.89137 0.90659 0.89632 0.91185 0.91745 0.90947 0.91233 0.89943 0.90285 0.85220 0.92230 0.90881 0.92607 0.78260 0.93548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.67 37.16 0.36 -1.84 16 2 C -0.11 -1.88 5.31 -26.73 -0.14 -2.02 16 3 C -0.10 -1.81 1.93 -90.50 -0.17 -1.98 16 4 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 5 C 0.12 1.89 5.31 -3.71 -0.02 1.87 16 6 N -0.59 -9.54 2.98 -174.20 -0.52 -10.06 16 7 C 0.60 9.97 7.70 -12.39 -0.10 9.88 16 8 O -0.54 -9.86 15.19 5.30 0.08 -9.78 16 9 C 0.01 0.10 6.89 -82.99 -0.57 -0.47 16 10 N -0.26 -3.34 8.60 33.28 0.29 -3.05 16 11 N -0.38 -3.55 6.82 33.42 0.23 -3.32 16 12 H 0.44 2.48 8.96 -190.22 -1.71 0.78 16 13 C 0.01 0.10 7.12 -82.45 -0.59 -0.49 16 14 C -0.14 -1.76 5.99 -104.88 -0.63 -2.39 16 15 C -0.04 -0.46 5.59 -27.79 -0.16 -0.62 16 16 C -0.12 -0.87 5.91 -26.43 -0.16 -1.03 16 17 C -0.12 -0.68 5.89 -26.47 -0.16 -0.83 16 18 C -0.05 -0.27 6.31 -27.67 -0.17 -0.45 16 19 C 0.07 1.15 6.30 -3.94 -0.02 1.13 16 20 C -0.15 -2.69 5.64 -26.84 -0.15 -2.84 16 21 C 0.18 3.63 2.20 -67.89 -0.15 3.48 16 22 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 23 N -0.72 -17.75 4.33 -53.39 -0.23 -17.98 16 24 C -0.23 -6.41 9.93 -15.06 -0.15 -6.56 16 25 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 26 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 27 N -0.93 -28.07 13.06 55.49 0.72 -27.35 16 28 Si 0.90 22.37 29.55 -169.99 -5.02 17.34 16 29 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 30 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 31 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.67 6.70 -51.93 -0.35 0.32 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 1.67 7.22 -51.93 -0.37 1.30 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.09 1.45 5.75 -51.93 -0.30 1.15 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.09 1.03 7.58 -51.93 -0.39 0.64 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.45 8.12 -51.93 -0.42 0.03 16 43 H 0.07 0.30 8.14 -51.92 -0.42 -0.12 16 44 H 0.07 0.46 8.11 -51.93 -0.42 0.04 16 45 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.13 1.94 3.71 -116.44 -0.43 1.51 16 48 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 49 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 50 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 51 H 0.38 10.18 7.51 -40.82 -0.31 9.87 16 52 H 0.25 7.47 8.31 -40.82 -0.34 7.14 16 LS Contribution 398.76 15.07 6.01 6.01 Total: -1.00 -32.77 398.76 -11.68 -44.45 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -10.16 Total: 9.39 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -3.07 Total: -5.65 kcal Atomic # 7 Polarization: -62.25 SS G_CDS: 0.49 Total: -61.76 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.08 Total: -9.78 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.77 -11.68 -44.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037878427.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.801 kcal (2) G-P(sol) polarization free energy of solvation -32.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds