Wall clock time and date at job start Wed Apr 1 2020 05:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46743 * 2 1 4 4 H 1.09000 * 109.49907 * 55.06637 * 3 2 1 5 5 C 1.53191 * 109.49930 * 294.99804 * 3 2 1 6 6 N 1.46929 * 108.77565 * 185.41607 * 5 3 2 7 7 C 1.34779 * 120.62707 * 233.58388 * 6 5 3 8 8 O 1.21565 * 119.99965 * 6.37854 * 7 6 5 9 9 C 1.47710 * 119.99448 * 186.37730 * 7 6 5 10 10 N 1.32201 * 126.68039 * 6.65007 * 9 7 6 11 11 N 1.28845 * 110.15441 * 179.71799 * 10 9 7 12 12 H 0.96997 * 124.98358 * 179.97438 * 11 10 9 13 13 C 1.34318 * 110.03604 * 359.94396 * 11 10 9 14 14 C 1.35583 * 107.21832 * 0.10872 * 13 11 10 15 15 C 1.50375 * 124.62112 * 179.78191 * 14 13 11 16 16 C 1.53478 * 108.28478 * 343.78784 * 15 14 13 17 17 C 1.53106 * 109.50766 * 49.48661 * 16 15 14 18 18 C 1.50716 * 128.90267 * 180.21942 * 13 11 10 19 19 C 1.46920 * 118.73772 * 53.86144 * 6 5 3 20 20 C 1.53625 * 108.54694 * 306.09300 * 19 6 5 21 21 C 1.53039 * 109.24033 * 54.85519 * 20 19 6 22 22 H 1.09003 * 109.46153 * 58.53441 * 21 20 19 23 23 N 1.46498 * 109.46299 * 178.49195 * 21 20 19 24 24 C 1.36935 * 120.00202 * 275.07118 * 23 21 20 25 25 H 1.08004 * 119.99888 * 359.97438 * 24 23 21 26 26 C 1.38817 * 120.00065 * 179.97438 * 24 23 21 27 27 N 1.31624 * 119.99691 * 180.02562 * 26 24 23 28 28 Si 1.86797 * 120.00115 * 0.02562 * 26 24 23 29 29 H 1.48497 * 109.47132 * 89.99877 * 28 26 24 30 30 H 1.48495 * 109.47434 * 210.00171 * 28 26 24 31 31 H 1.48503 * 109.47062 * 330.00308 * 28 26 24 32 32 H 1.08996 * 109.47181 * 60.00074 * 1 2 3 33 33 H 1.08997 * 109.47085 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.46959 * 300.00053 * 1 2 3 35 35 H 1.08990 * 109.47531 * 240.00345 * 2 1 3 36 36 H 1.09003 * 109.46972 * 119.99571 * 2 1 3 37 37 H 1.08997 * 109.58275 * 65.62664 * 5 3 2 38 38 H 1.09002 * 109.58587 * 305.20597 * 5 3 2 39 39 H 1.09007 * 109.70263 * 103.47889 * 15 14 13 40 40 H 1.08996 * 109.70136 * 224.04532 * 15 14 13 41 41 H 1.08996 * 109.46963 * 169.50089 * 16 15 14 42 42 H 1.09006 * 109.45981 * 289.48958 * 16 15 14 43 43 H 1.09003 * 109.44005 * 49.99397 * 17 16 15 44 44 H 1.08999 * 109.44298 * 169.92364 * 17 16 15 45 45 H 1.09000 * 109.68866 * 283.00433 * 18 13 11 46 46 H 1.09000 * 109.68839 * 43.57736 * 18 13 11 47 47 H 1.09003 * 109.58770 * 65.92690 * 19 6 5 48 48 H 1.09001 * 109.58893 * 186.35002 * 19 6 5 49 49 H 1.08997 * 109.63212 * 294.87273 * 20 19 6 50 50 H 1.08990 * 109.45804 * 174.73971 * 20 19 6 51 51 H 0.96998 * 119.99810 * 95.06142 * 23 21 20 52 52 H 0.96999 * 119.99327 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6065 1.9817 0.8424 5 6 1.6350 2.1281 -1.3088 6 7 2.2414 3.4657 -1.3493 7 6 1.4815 4.5580 -1.5638 8 8 0.2709 4.4566 -1.6103 9 6 2.1196 5.8781 -1.7423 10 7 3.4152 6.1224 -1.8388 11 7 3.6186 7.3853 -1.9936 12 1 4.4900 7.8009 -2.0868 13 6 2.4468 8.0417 -2.0077 14 6 1.4673 7.1179 -1.8487 15 6 -0.0028 7.4307 -1.8025 16 6 -0.1671 8.9363 -1.5535 17 6 0.7144 9.7156 -2.5332 18 6 2.1910 9.5184 -2.1676 19 6 3.6929 3.5894 -1.1578 20 6 4.0741 2.8881 0.1548 21 6 3.5656 1.4451 0.1217 22 1 3.9989 0.9268 -0.7338 23 7 3.9578 0.7609 1.3563 24 6 5.1962 0.1851 1.4562 25 1 5.8836 0.2350 0.6247 26 6 5.5680 -0.4628 2.6263 27 7 6.7585 -1.0158 2.7225 28 14 4.3788 -0.5498 4.0642 29 1 3.5463 -1.7736 3.9447 30 1 5.1430 -0.5932 5.3367 31 1 3.5016 0.6485 4.0542 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 -0.3633 0.5139 0.8900 35 1 1.8934 -0.5137 -0.8899 36 1 1.8933 -0.5138 0.8901 37 1 0.5496 2.2173 -1.3538 38 1 1.9907 1.5397 -2.1547 39 1 -0.4657 7.1628 -2.7523 40 1 -0.4725 6.8706 -0.9939 41 1 -1.2099 9.2172 -1.7007 42 1 0.1313 9.1701 -0.5315 43 1 0.5398 9.3526 -3.5460 44 1 0.4664 10.7757 -2.4800 45 1 2.4094 10.0324 -1.2315 46 1 2.8225 9.9166 -2.9618 47 1 4.2130 3.1179 -1.9916 48 1 3.9658 4.6433 -1.1032 49 1 3.6218 3.4139 0.9957 50 1 5.1583 2.8893 0.2655 51 1 3.3403 0.7158 2.1030 52 1 7.0182 -1.4688 3.5400 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037878429.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:53:40 Heat of formation + Delta-G solvation = 42.612947 kcal Electronic energy + Delta-G solvation = -31605.995602 eV Core-core repulsion = 27606.715320 eV Total energy + Delta-G solvation = -3999.280282 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.06777 -39.85943 -37.74128 -37.21762 -34.74532 -33.86344 -32.81407 -31.71344 -30.23825 -30.05721 -29.76648 -28.66733 -25.66894 -24.15286 -23.87559 -23.41743 -22.43039 -22.04744 -20.74359 -19.89449 -19.32923 -18.96639 -17.98109 -17.50169 -16.70845 -16.20479 -15.81364 -15.10161 -14.95492 -14.59347 -14.30922 -14.16470 -14.07528 -13.92015 -13.64518 -13.46350 -13.34686 -13.29190 -13.10670 -12.77665 -12.60825 -12.42918 -12.32482 -12.00061 -11.72777 -11.34897 -11.24422 -11.16558 -11.07084 -10.96656 -10.93064 -10.73664 -10.50760 -10.36245 -10.20034 -10.14191 -9.82275 -9.65660 -9.54286 -9.45851 -8.88962 -8.80786 -8.38591 -7.22497 -5.75338 -3.09853 1.45163 1.90266 2.56597 3.15990 3.38965 3.42577 3.42968 3.46883 4.15463 4.28125 4.45416 4.52105 4.60925 4.84551 4.92052 4.97208 5.09875 5.11646 5.15554 5.23663 5.26664 5.32021 5.39537 5.53523 5.55323 5.56359 5.61408 5.62117 5.67789 5.74105 5.81671 5.83805 5.85121 6.03687 6.04290 6.06678 6.08821 6.17317 6.20059 6.31124 6.35932 6.39785 6.44264 6.55646 6.65112 6.77444 6.82860 6.93978 7.05152 7.51876 7.73631 8.01410 8.28633 8.44160 9.22903 9.95854 10.16452 11.43174 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015444 B = 0.002780 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.603388 B =10067.991294 C =10982.952259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.108 4.108 4 H 0.069 0.931 5 C 0.120 3.880 6 N -0.593 5.593 7 C 0.600 3.400 8 O -0.540 6.540 9 C 0.004 3.996 10 N -0.257 5.257 11 N -0.378 5.378 12 H 0.444 0.556 13 C 0.010 3.990 14 C -0.144 4.144 15 C -0.041 4.041 16 C -0.122 4.122 17 C -0.114 4.114 18 C -0.048 4.048 19 C 0.086 3.914 20 C -0.148 4.148 21 C 0.188 3.812 22 H 0.056 0.944 23 N -0.746 5.746 24 C -0.238 4.238 25 H 0.090 0.910 26 C 0.004 3.996 27 N -0.935 5.935 28 Si 0.881 3.119 29 H -0.284 1.284 30 H -0.292 1.292 31 H -0.277 1.277 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.083 0.917 46 H 0.078 0.922 47 H 0.064 0.936 48 H 0.120 0.880 49 H 0.055 0.945 50 H 0.078 0.922 51 H 0.360 0.640 52 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.902 22.036 -12.537 28.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.128 4.128 4 H 0.087 0.913 5 C -0.002 4.002 6 N -0.324 5.324 7 C 0.386 3.614 8 O -0.416 6.416 9 C -0.155 4.155 10 N -0.092 5.092 11 N -0.089 5.089 12 H 0.288 0.712 13 C -0.117 4.117 14 C -0.154 4.154 15 C -0.079 4.079 16 C -0.159 4.159 17 C -0.152 4.152 18 C -0.086 4.086 19 C -0.038 4.038 20 C -0.189 4.189 21 C 0.078 3.922 22 H 0.074 0.926 23 N -0.387 5.387 24 C -0.368 4.368 25 H 0.108 0.892 26 C -0.192 4.192 27 N -0.583 5.583 28 Si 0.712 3.288 29 H -0.211 1.211 30 H -0.219 1.219 31 H -0.204 1.204 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.110 0.890 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.101 0.899 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.091 0.909 45 H 0.101 0.899 46 H 0.097 0.903 47 H 0.082 0.918 48 H 0.137 0.863 49 H 0.074 0.926 50 H 0.096 0.904 51 H 0.193 0.807 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.297 21.304 -12.590 27.203 hybrid contribution -0.585 0.376 1.199 1.386 sum -11.882 21.679 -11.391 27.220 Atomic orbital electron populations 1.21854 0.96626 1.01116 1.01503 1.21459 0.94542 0.95722 1.03364 1.21823 0.97634 0.96189 0.97131 0.91263 1.21760 0.99472 0.81312 0.97661 1.48002 1.09086 1.06134 1.69209 1.16965 0.85828 0.81801 0.76823 1.90743 1.13060 1.85222 1.52546 1.21632 0.89472 0.95157 1.09276 1.73790 1.18345 0.96957 1.20140 1.43201 1.08917 1.04507 1.52310 0.71212 1.21161 0.85885 0.96658 1.08023 1.19854 0.96936 0.90458 1.08170 1.19964 0.89706 0.95187 1.03081 1.21678 0.99847 0.94880 0.99526 1.21560 0.92939 1.00538 1.00187 1.20237 0.98276 0.87645 1.02488 1.22652 0.78415 1.04545 0.98154 1.22684 1.02293 0.98404 0.95555 1.20194 0.90666 0.90838 0.90513 0.92566 1.42789 1.16584 1.66318 1.13048 1.19062 0.90657 1.26707 1.00379 0.89225 1.24649 0.96438 1.00428 0.97642 1.69701 1.19256 1.41769 1.27600 0.86594 0.80966 0.77834 0.83427 1.21077 1.21886 1.20362 0.92878 0.93088 0.93073 0.91918 0.90557 0.88978 0.91375 0.90577 0.89920 0.91167 0.91690 0.91294 0.90931 0.89885 0.90305 0.91778 0.86252 0.92630 0.90354 0.80674 0.93147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.67 37.16 0.36 -1.69 16 2 C -0.11 -1.77 5.31 -26.73 -0.14 -1.91 16 3 C -0.11 -1.76 1.93 -90.49 -0.17 -1.94 16 4 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 5 C 0.12 1.80 5.33 -3.71 -0.02 1.78 16 6 N -0.59 -9.15 2.97 -173.67 -0.52 -9.67 16 7 C 0.60 9.63 7.69 -12.39 -0.10 9.53 16 8 O -0.54 -9.56 15.34 5.31 0.08 -9.48 16 9 C 0.00 0.05 6.82 -82.99 -0.57 -0.51 16 10 N -0.26 -3.20 8.73 33.28 0.29 -2.91 16 11 N -0.38 -3.38 6.82 33.42 0.23 -3.16 16 12 H 0.44 2.31 8.96 -190.22 -1.71 0.60 16 13 C 0.01 0.09 7.12 -82.45 -0.59 -0.50 16 14 C -0.14 -1.71 5.99 -104.88 -0.63 -2.33 16 15 C -0.04 -0.43 5.51 -27.79 -0.15 -0.58 16 16 C -0.12 -0.86 5.91 -26.43 -0.16 -1.02 16 17 C -0.11 -0.63 5.89 -26.47 -0.16 -0.78 16 18 C -0.05 -0.26 6.31 -27.67 -0.17 -0.43 16 19 C 0.09 1.29 6.16 -3.49 -0.02 1.27 16 20 C -0.15 -2.62 5.68 -26.39 -0.15 -2.77 16 21 C 0.19 3.57 2.19 -67.89 -0.15 3.42 16 22 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 23 N -0.75 -17.30 4.14 -53.38 -0.22 -17.52 16 24 C -0.24 -6.58 10.41 -15.06 -0.16 -6.73 16 25 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 26 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 27 N -0.94 -29.26 13.97 55.49 0.78 -28.49 16 28 Si 0.88 22.23 27.74 -169.99 -4.71 17.52 16 29 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 30 H -0.29 -7.52 7.11 56.52 0.40 -7.11 16 31 H -0.28 -6.67 6.52 56.52 0.37 -6.30 16 32 H 0.05 0.66 6.70 -51.93 -0.35 0.31 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.08 1.37 7.22 -51.93 -0.37 1.00 16 37 H 0.09 1.39 5.71 -51.93 -0.30 1.09 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 40 H 0.08 0.98 7.81 -51.93 -0.41 0.58 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.47 8.12 -51.93 -0.42 0.05 16 43 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 44 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 45 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 47 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.12 1.73 4.12 -73.93 -0.30 1.43 16 49 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 50 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 51 H 0.36 8.40 5.37 -40.82 -0.22 8.18 16 52 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 396.27 15.07 5.97 5.97 Total: -1.00 -33.80 396.27 -11.17 -44.97 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -10.00 Total: 7.92 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -3.07 Total: -5.18 kcal Atomic # 7 Polarization: -62.29 SS G_CDS: 0.56 Total: -61.73 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.08 Total: -9.48 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.71 Total: 17.52 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.80 -11.17 -44.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037878429.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.584 kcal (2) G-P(sol) polarization free energy of solvation -33.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds