Wall clock time and date at job start Wed Apr 1 2020 06:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.46954 * 2 1 4 4 H 1.09003 * 109.52699 * 54.91779 * 3 2 1 5 5 C 1.53196 * 109.48804 * 294.82538 * 3 2 1 6 6 N 1.46924 * 108.76800 * 185.40124 * 5 3 2 7 7 C 1.34782 * 120.63354 * 233.64424 * 6 5 3 8 8 O 1.21274 * 119.99786 * 359.97312 * 7 6 5 9 9 C 1.50699 * 119.99966 * 179.97438 * 7 6 5 10 10 C 1.52999 * 109.46846 * 179.97438 * 9 7 6 11 11 C 1.50708 * 109.46836 * 179.97438 * 10 9 7 12 12 C 1.38621 * 120.44281 * 124.72387 * 11 10 9 13 13 C 1.38582 * 118.39424 * 179.80244 * 12 11 10 14 14 N 1.32344 * 119.10256 * 0.47166 * 13 12 11 15 15 C 1.31780 * 120.82381 * 359.74826 * 14 13 12 16 16 C 1.50697 * 119.11951 * 179.97438 * 15 14 13 17 17 N 1.31807 * 121.75208 * 0.02562 * 15 14 13 18 18 C 1.46932 * 118.73828 * 53.61710 * 6 5 3 19 19 C 1.53196 * 108.77384 * 306.39467 * 18 6 5 20 20 C 1.53036 * 109.31536 * 54.63418 * 19 18 6 21 21 H 1.09007 * 109.46211 * 58.63452 * 20 19 18 22 22 N 1.46496 * 109.46261 * 178.61527 * 20 19 18 23 23 C 1.36945 * 119.99718 * 275.02605 * 22 20 19 24 24 H 1.07997 * 119.99756 * 359.97438 * 23 22 20 25 25 C 1.38805 * 119.99878 * 179.97438 * 23 22 20 26 26 N 1.31624 * 120.00257 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 119.99929 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.47187 * 179.97438 * 27 25 23 29 29 H 1.48494 * 109.47141 * 300.00154 * 27 25 23 30 30 H 1.48498 * 109.47018 * 60.00200 * 27 25 23 31 31 H 1.08998 * 109.47477 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47530 * 300.00267 * 1 2 3 33 33 H 1.09006 * 109.46977 * 59.99903 * 1 2 3 34 34 H 1.08997 * 109.47162 * 239.99729 * 2 1 3 35 35 H 1.08996 * 109.46536 * 119.99902 * 2 1 3 36 36 H 1.09005 * 109.57902 * 65.62432 * 5 3 2 37 37 H 1.08993 * 109.72026 * 305.26324 * 5 3 2 38 38 H 1.08998 * 109.47021 * 300.00015 * 9 7 6 39 39 H 1.09004 * 109.47210 * 59.99727 * 9 7 6 40 40 H 1.08990 * 109.47563 * 300.00378 * 10 9 7 41 41 H 1.09004 * 109.47145 * 60.00676 * 10 9 7 42 42 H 1.08001 * 120.80347 * 0.02740 * 12 11 10 43 43 H 1.07997 * 120.44214 * 180.22216 * 13 12 11 44 44 H 1.09002 * 109.47397 * 270.02063 * 16 15 14 45 45 H 1.08998 * 109.47422 * 30.02606 * 16 15 14 46 46 H 1.09003 * 109.46893 * 150.02661 * 16 15 14 47 47 H 1.08990 * 109.58621 * 186.60591 * 18 6 5 48 48 H 1.09001 * 109.58233 * 66.18039 * 18 6 5 49 49 H 1.08996 * 109.49437 * 294.68012 * 19 18 6 50 50 H 1.09000 * 109.52019 * 174.60075 * 19 18 6 51 51 H 0.96996 * 120.00499 * 95.02336 * 22 20 19 52 52 H 0.97001 * 119.99885 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6047 1.9828 0.8407 5 6 1.6386 2.1264 -1.3107 6 7 2.2449 3.4641 -1.3508 7 6 1.4852 4.5562 -1.5674 8 8 0.2893 4.4401 -1.7320 9 6 2.1219 5.9216 -1.6051 10 6 1.0468 6.9786 -1.8653 11 6 1.6835 8.3441 -1.9024 12 6 1.5140 9.1684 -3.0039 13 6 2.1150 10.4170 -2.9913 14 7 2.8337 10.7749 -1.9392 15 6 2.9767 9.9628 -0.9113 16 6 3.8041 10.4092 0.2664 17 7 2.4163 8.7700 -0.8864 18 6 3.6950 3.5889 -1.1497 19 6 4.0733 2.8882 0.1590 20 6 3.5652 1.4450 0.1258 21 1 4.0008 0.9262 -0.7282 22 7 3.9541 0.7621 1.3621 23 6 5.1920 0.1858 1.4657 24 1 5.8814 0.2345 0.6359 25 6 5.5607 -0.4609 2.6373 26 7 4.7202 -0.5207 3.6485 27 14 7.2491 -1.2475 2.7784 28 1 7.3955 -1.8682 4.1195 29 1 7.3987 -2.2896 1.7311 30 1 8.2955 -0.2096 2.5970 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 1.8932 -0.5138 0.8900 36 1 0.5533 2.2155 -1.3589 37 1 1.9948 1.5384 -2.1565 38 1 2.6064 6.1230 -0.6497 39 1 2.8641 5.9545 -2.4029 40 1 0.5627 6.7769 -2.8208 41 1 0.3045 6.9458 -1.0678 42 1 0.9248 8.8467 -3.8500 43 1 2.0016 11.0874 -3.8305 44 1 4.8421 10.1133 0.1144 45 1 3.7456 11.4935 0.3615 46 1 3.4230 9.9437 1.1754 47 1 3.9665 4.6428 -1.0917 48 1 4.2209 3.1191 -1.9810 49 1 3.6187 3.4147 0.9981 50 1 5.1574 2.8897 0.2728 51 1 3.3347 0.7180 2.1073 52 1 4.9777 -0.9729 4.4671 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037887955.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:02:05 Heat of formation + Delta-G solvation = 4.694392 kcal Electronic energy + Delta-G solvation = -30452.541157 eV Core-core repulsion = 26451.616603 eV Total energy + Delta-G solvation = -4000.924554 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.41814 -40.16902 -37.91655 -35.38016 -34.73901 -33.79765 -33.71178 -31.83025 -31.69829 -29.50576 -29.00474 -28.63793 -26.37022 -24.71976 -23.86729 -23.39227 -22.72066 -21.92300 -20.82052 -19.79025 -18.84196 -17.89049 -17.36847 -17.07416 -16.27047 -16.01081 -15.68968 -15.48663 -15.41520 -14.93404 -14.25536 -14.08389 -14.00659 -13.72034 -13.49661 -13.33331 -13.29903 -13.20152 -12.88606 -12.82112 -12.66216 -12.52244 -12.34064 -12.07953 -11.76420 -11.60373 -11.51164 -11.28759 -11.14369 -10.92908 -10.86809 -10.79664 -10.68877 -10.35339 -10.24182 -10.16086 -9.81063 -9.71511 -9.63278 -9.59969 -9.50578 -8.90728 -8.46949 -6.97743 -5.78707 -3.07524 0.57548 0.74589 2.67452 3.06182 3.41227 3.41494 3.46370 3.47338 3.58057 3.76688 4.09243 4.49632 4.56268 4.69992 4.74465 4.80566 4.90026 5.03703 5.05751 5.15745 5.22610 5.25990 5.26579 5.33523 5.36222 5.46828 5.52847 5.57511 5.60302 5.61259 5.68308 5.68874 5.74434 5.80630 5.89347 6.02071 6.12043 6.12960 6.15598 6.32360 6.35732 6.39761 6.45939 6.56604 6.68179 6.72065 6.82731 6.95600 7.05507 7.51518 7.66667 7.80858 8.22359 8.39520 9.50867 10.08355 10.43204 11.43605 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011752 B = 0.002397 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.927850 B =11677.422054 C =13471.917401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.104 4.104 4 H 0.069 0.931 5 C 0.119 3.881 6 N -0.605 5.605 7 C 0.516 3.484 8 O -0.552 6.552 9 C -0.131 4.131 10 C -0.056 4.056 11 C 0.185 3.815 12 C -0.234 4.234 13 C 0.152 3.848 14 N -0.527 5.527 15 C 0.321 3.679 16 C -0.087 4.087 17 N -0.515 5.515 18 C 0.106 3.894 19 C -0.152 4.152 20 C 0.184 3.816 21 H 0.047 0.953 22 N -0.720 5.720 23 C -0.239 4.239 24 H 0.069 0.931 25 C -0.012 4.012 26 N -0.932 5.932 27 Si 0.905 3.095 28 H -0.292 1.292 29 H -0.286 1.286 30 H -0.287 1.287 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.056 0.944 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.064 0.936 38 H 0.106 0.894 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.148 0.852 43 H 0.168 0.832 44 H 0.087 0.913 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.077 0.923 48 H 0.067 0.933 49 H 0.060 0.940 50 H 0.076 0.924 51 H 0.384 0.616 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.408 18.521 -14.082 24.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.124 4.124 4 H 0.088 0.912 5 C -0.004 4.004 6 N -0.338 5.338 7 C 0.304 3.696 8 O -0.431 6.431 9 C -0.171 4.171 10 C -0.094 4.094 11 C 0.039 3.961 12 C -0.256 4.256 13 C -0.014 4.014 14 N -0.242 5.242 15 C 0.054 3.946 16 C -0.145 4.145 17 N -0.230 5.230 18 C -0.017 4.017 19 C -0.193 4.193 20 C 0.073 3.927 21 H 0.065 0.935 22 N -0.360 5.360 23 C -0.370 4.370 24 H 0.087 0.913 25 C -0.208 4.208 26 N -0.580 5.580 27 Si 0.736 3.264 28 H -0.218 1.218 29 H -0.213 1.213 30 H -0.213 1.213 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.102 0.898 36 H 0.108 0.892 37 H 0.082 0.918 38 H 0.124 0.876 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.116 0.884 42 H 0.166 0.834 43 H 0.185 0.815 44 H 0.106 0.894 45 H 0.103 0.897 46 H 0.106 0.894 47 H 0.096 0.904 48 H 0.085 0.915 49 H 0.079 0.921 50 H 0.094 0.906 51 H 0.218 0.782 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.308 18.654 -13.387 23.811 hybrid contribution 0.429 -0.688 -0.378 0.894 sum -5.879 17.966 -13.765 23.384 Atomic orbital electron populations 1.21843 0.96818 1.01015 1.01297 1.21449 0.94369 0.95732 1.03446 1.21778 0.97636 0.96247 0.96740 0.91208 1.21745 0.99425 0.81489 0.97726 1.48178 1.08615 1.06808 1.70152 1.20509 0.86859 0.86102 0.76132 1.90666 1.14899 1.86739 1.50768 1.21565 0.98994 0.91400 1.05152 1.20370 0.97192 0.86807 1.05012 1.21787 0.89968 0.96042 0.88319 1.22788 1.04603 0.96966 1.01211 1.23224 0.89063 0.93767 0.95329 1.68267 1.17874 1.36312 1.01786 1.23314 0.92102 0.85548 0.93660 1.20595 0.98486 1.02430 0.93030 1.68113 1.09948 1.16356 1.28563 1.21891 0.79375 1.01224 0.99246 1.22685 1.02221 0.99290 0.95120 1.20181 0.90798 0.90517 0.91175 0.93493 1.42403 1.16451 1.64458 1.12715 1.19158 0.91809 1.27463 0.98547 0.91328 1.24725 0.98109 1.01541 0.96444 1.69649 1.35256 1.48339 1.04746 0.86307 0.84173 0.79183 0.76733 1.21757 1.21327 1.21343 0.93189 0.92995 0.93234 0.92495 0.89795 0.89174 0.91779 0.87567 0.89187 0.88956 0.88392 0.83427 0.81496 0.89444 0.89671 0.89400 0.90444 0.91503 0.92109 0.90578 0.78191 0.93466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.67 37.16 0.36 -1.75 16 2 C -0.11 -1.80 5.31 -26.73 -0.14 -1.94 16 3 C -0.10 -1.68 1.92 -90.50 -0.17 -1.86 16 4 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 5 C 0.12 1.70 5.33 -3.71 -0.02 1.68 16 6 N -0.61 -8.21 2.97 -172.76 -0.51 -8.72 16 7 C 0.52 6.96 7.70 -10.98 -0.08 6.87 16 8 O -0.55 -8.98 15.39 5.56 0.09 -8.90 16 9 C -0.13 -1.35 3.92 -27.88 -0.11 -1.46 16 10 C -0.06 -0.53 4.94 -27.88 -0.14 -0.67 16 11 C 0.19 1.80 6.21 -82.24 -0.51 1.29 16 12 C -0.23 -1.80 9.80 -39.31 -0.39 -2.18 16 13 C 0.15 1.19 11.30 -17.20 -0.19 0.99 16 14 N -0.53 -5.35 10.33 -10.73 -0.11 -5.46 16 15 C 0.32 3.34 7.64 -157.20 -1.20 2.13 16 16 C -0.09 -0.66 10.32 36.00 0.37 -0.29 16 17 N -0.51 -5.72 9.94 -6.99 -0.07 -5.79 16 18 C 0.11 1.33 6.34 -3.70 -0.02 1.31 16 19 C -0.15 -2.47 5.66 -26.61 -0.15 -2.62 16 20 C 0.18 3.39 2.19 -67.89 -0.15 3.24 16 21 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 22 N -0.72 -16.98 4.33 -53.38 -0.23 -17.21 16 23 C -0.24 -6.30 9.93 -15.06 -0.15 -6.45 16 24 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 25 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 26 N -0.93 -27.44 13.06 55.49 0.72 -26.72 16 27 Si 0.90 21.87 29.55 -169.99 -5.02 16.85 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 29 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 30 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.63 6.70 -51.93 -0.35 0.28 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.08 1.62 7.22 -51.93 -0.37 1.24 16 36 H 0.09 1.35 5.73 -51.93 -0.30 1.05 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.11 1.14 7.53 -51.93 -0.39 0.75 16 39 H 0.09 0.80 7.94 -51.93 -0.41 0.38 16 40 H 0.09 0.79 7.90 -51.93 -0.41 0.38 16 41 H 0.10 1.05 8.10 -51.93 -0.42 0.63 16 42 H 0.15 0.74 8.01 -52.49 -0.42 0.32 16 43 H 0.17 0.73 8.06 -52.49 -0.42 0.31 16 44 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.08 0.82 5.93 -51.93 -0.31 0.51 16 48 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 50 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 51 H 0.38 9.83 7.51 -40.82 -0.31 9.53 16 52 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 414.99 15.07 6.25 6.25 Total: -1.00 -32.19 414.99 -10.41 -42.60 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -8.73 Total: 9.23 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -2.80 Total: -2.14 kcal Atomic # 7 Polarization: -63.69 SS G_CDS: -0.20 Total: -63.89 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.09 Total: -8.90 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -32.19 -10.41 -42.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037887955.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.290 kcal (2) G-P(sol) polarization free energy of solvation -32.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds