Wall clock time and date at job start Wed Apr 1 2020 06:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47302 * 2 1 4 4 H 1.09002 * 109.49918 * 305.00302 * 3 2 1 5 5 C 1.53196 * 109.49572 * 65.06819 * 3 2 1 6 6 N 1.46992 * 108.73878 * 174.58570 * 5 3 2 7 7 C 1.34784 * 120.60795 * 126.38575 * 6 5 3 8 8 O 1.21277 * 120.00226 * 0.02644 * 7 6 5 9 9 C 1.50706 * 119.99411 * 180.02562 * 7 6 5 10 10 C 1.53002 * 109.46927 * 180.02562 * 9 7 6 11 11 C 1.50696 * 109.46954 * 180.02562 * 10 9 7 12 12 C 1.38621 * 120.44965 * 124.72009 * 11 10 9 13 13 C 1.38579 * 118.39934 * 179.76027 * 12 11 10 14 14 N 1.32342 * 119.10330 * 0.51228 * 13 12 11 15 15 C 1.31783 * 120.82419 * 359.74795 * 14 13 12 16 16 C 1.50697 * 119.12599 * 180.02562 * 15 14 13 17 17 N 1.31805 * 121.74835 * 359.97438 * 15 14 13 18 18 C 1.46922 * 118.75940 * 306.41163 * 6 5 3 19 19 C 1.53194 * 108.77708 * 53.60550 * 18 6 5 20 20 C 1.53039 * 109.49913 * 184.93649 * 3 2 1 21 21 H 1.08997 * 109.45914 * 58.63125 * 20 3 2 22 22 N 1.46503 * 109.45768 * 298.67620 * 20 3 2 23 23 C 1.36936 * 119.99646 * 155.00132 * 22 20 3 24 24 H 1.08002 * 120.00532 * 359.97438 * 23 22 20 25 25 C 1.38817 * 119.99829 * 179.97438 * 23 22 20 26 26 N 1.31619 * 120.00007 * 179.97438 * 25 23 22 27 27 Si 1.86801 * 119.99989 * 359.97438 * 25 23 22 28 28 H 1.48498 * 109.47195 * 90.00061 * 27 25 23 29 29 H 1.48498 * 109.46869 * 209.99984 * 27 25 23 30 30 H 1.48503 * 109.46780 * 329.99878 * 27 25 23 31 31 H 1.08996 * 109.47558 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47052 * 299.99929 * 1 2 3 33 33 H 1.09007 * 109.47385 * 59.99555 * 1 2 3 34 34 H 1.09007 * 109.47051 * 240.00557 * 2 1 3 35 35 H 1.08997 * 109.47069 * 120.00885 * 2 1 3 36 36 H 1.09001 * 109.58261 * 294.40557 * 5 3 2 37 37 H 1.08996 * 109.58319 * 54.82878 * 5 3 2 38 38 H 1.09007 * 109.46980 * 300.00137 * 9 7 6 39 39 H 1.09003 * 109.47281 * 60.00020 * 9 7 6 40 40 H 1.08998 * 109.46893 * 299.99938 * 10 9 7 41 41 H 1.08994 * 109.47193 * 59.99739 * 10 9 7 42 42 H 1.08002 * 120.79762 * 0.02562 * 12 11 10 43 43 H 1.08002 * 120.44329 * 180.26412 * 13 12 11 44 44 H 1.09000 * 109.46787 * 269.97838 * 16 15 14 45 45 H 1.09007 * 109.47054 * 29.97569 * 16 15 14 46 46 H 1.08995 * 109.47050 * 149.98005 * 16 15 14 47 47 H 1.09004 * 109.58306 * 293.82373 * 18 6 5 48 48 H 1.08994 * 109.70589 * 173.46329 * 18 6 5 49 49 H 1.08992 * 109.49935 * 185.41288 * 19 18 6 50 50 H 1.08998 * 109.49411 * 65.31593 * 19 18 6 51 51 H 0.97000 * 120.00335 * 334.99406 * 22 20 3 52 52 H 0.96998 * 120.00172 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6057 1.9820 -0.8416 5 6 1.6365 2.1274 1.3096 6 7 2.2438 3.4655 1.3492 7 6 1.4839 4.5578 1.5640 8 8 0.2878 4.4420 1.7272 9 6 2.1209 5.9231 1.6013 10 6 1.0456 6.9806 1.8594 11 6 1.6825 8.3459 1.8961 12 6 1.2286 9.3554 1.0616 13 6 1.8417 10.5961 1.1342 14 7 2.8401 10.7719 1.9848 15 6 3.2486 9.7872 2.7594 16 6 4.3887 10.0298 3.7146 17 7 2.6859 8.5959 2.7216 18 6 3.6941 3.5898 1.1497 19 6 4.0739 2.8880 -0.1580 20 6 3.5654 1.4449 -0.1241 21 1 3.8557 0.9360 -1.0432 22 7 4.1496 0.7484 1.0247 23 6 5.3876 0.1727 0.9190 24 1 5.9331 0.2317 -0.0112 25 6 5.9415 -0.4869 2.0077 26 7 7.1311 -1.0407 1.9061 27 14 4.9984 -0.5884 3.6170 28 1 4.1556 -1.8111 3.6205 29 1 5.9569 -0.6446 4.7497 30 1 4.1328 0.6098 3.7598 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5140 0.8899 36 1 0.5512 2.2163 1.3560 37 1 1.9936 1.5390 2.1547 38 1 2.8621 5.9566 2.4000 39 1 2.6065 6.1238 0.6463 40 1 0.3043 6.9472 1.0611 41 1 0.5604 6.7798 2.8145 42 1 0.4140 9.1804 0.3744 43 1 1.5117 11.4074 0.5022 44 1 5.3321 9.7960 3.2212 45 1 4.3888 11.0757 4.0220 46 1 4.2698 9.3934 4.5914 47 1 4.2189 3.1206 1.9820 48 1 3.9682 4.6431 1.0921 49 1 5.1581 2.8893 -0.2699 50 1 3.6203 3.4139 -0.9981 51 1 3.6597 0.6951 1.8601 52 1 7.5183 -1.5013 2.6669 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037887956.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:02:10 Heat of formation + Delta-G solvation = 10.688050 kcal Electronic energy + Delta-G solvation = -30968.391470 eV Core-core repulsion = 26967.726821 eV Total energy + Delta-G solvation = -4000.664649 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.40712 -40.21993 -38.10684 -35.36408 -34.57872 -33.88712 -33.70681 -31.83750 -31.73627 -29.86368 -29.04344 -28.70393 -26.50876 -24.73151 -23.94866 -23.36206 -23.10221 -21.96926 -20.88366 -19.56712 -18.26783 -17.93293 -17.88340 -17.21192 -16.25451 -15.95846 -15.74322 -15.46675 -15.38798 -14.85649 -14.47892 -14.23319 -14.08280 -13.76155 -13.63071 -13.41012 -13.35628 -13.11038 -12.91240 -12.83020 -12.62950 -12.47566 -12.40734 -12.34827 -11.87881 -11.62280 -11.48476 -11.29155 -11.14455 -11.09912 -10.97243 -10.86476 -10.74521 -10.40980 -10.39335 -10.23301 -9.83570 -9.73995 -9.62312 -9.57988 -9.49631 -8.97939 -8.37331 -7.31188 -5.81627 -3.16957 0.58662 0.75614 2.71530 3.10520 3.32171 3.35279 3.42040 3.42498 3.58988 3.77683 4.11034 4.52293 4.54036 4.71467 4.75536 4.83924 4.91348 4.99770 5.05932 5.10130 5.16315 5.20337 5.26221 5.28669 5.33259 5.44739 5.51318 5.53297 5.54821 5.61175 5.62910 5.64575 5.74658 5.75805 5.81844 5.89033 6.00769 6.05180 6.13306 6.17329 6.25106 6.29674 6.42327 6.49383 6.54339 6.64401 6.73014 6.73693 6.87326 7.58274 7.81672 7.94617 8.26214 8.37526 9.15688 9.88354 10.08130 11.36799 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011773 B = 0.002760 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.838825 B =10142.608341 C =11555.470562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.106 4.106 4 H 0.071 0.929 5 C 0.117 3.883 6 N -0.603 5.603 7 C 0.515 3.485 8 O -0.555 6.555 9 C -0.130 4.130 10 C -0.055 4.055 11 C 0.186 3.814 12 C -0.233 4.233 13 C 0.152 3.848 14 N -0.527 5.527 15 C 0.320 3.680 16 C -0.087 4.087 17 N -0.515 5.515 18 C 0.111 3.889 19 C -0.150 4.150 20 C 0.185 3.815 21 H 0.060 0.940 22 N -0.743 5.743 23 C -0.241 4.241 24 H 0.090 0.910 25 C 0.007 3.993 26 N -0.933 5.933 27 Si 0.878 3.122 28 H -0.284 1.284 29 H -0.291 1.291 30 H -0.278 1.278 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.065 0.935 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.148 0.852 43 H 0.168 0.832 44 H 0.087 0.913 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.080 0.920 48 H 0.074 0.926 49 H 0.079 0.921 50 H 0.052 0.948 51 H 0.360 0.640 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.145 19.915 -2.688 23.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.126 4.126 4 H 0.090 0.910 5 C -0.005 4.005 6 N -0.335 5.335 7 C 0.303 3.697 8 O -0.434 6.434 9 C -0.171 4.171 10 C -0.093 4.093 11 C 0.039 3.961 12 C -0.255 4.255 13 C -0.014 4.014 14 N -0.242 5.242 15 C 0.053 3.947 16 C -0.145 4.145 17 N -0.231 5.231 18 C -0.011 4.011 19 C -0.191 4.191 20 C 0.075 3.925 21 H 0.078 0.922 22 N -0.387 5.387 23 C -0.370 4.370 24 H 0.108 0.892 25 C -0.189 4.189 26 N -0.581 5.581 27 Si 0.708 3.292 28 H -0.211 1.211 29 H -0.218 1.218 30 H -0.205 1.205 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.083 0.917 38 H 0.123 0.877 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.115 0.885 42 H 0.166 0.834 43 H 0.185 0.815 44 H 0.106 0.894 45 H 0.103 0.897 46 H 0.105 0.895 47 H 0.099 0.901 48 H 0.092 0.908 49 H 0.098 0.902 50 H 0.070 0.930 51 H 0.194 0.806 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.774 19.909 -2.041 23.220 hybrid contribution -1.086 -0.272 0.534 1.241 sum -12.861 19.637 -1.507 23.522 Atomic orbital electron populations 1.21858 0.96607 1.01184 1.01474 1.21433 0.94496 0.95704 1.03300 1.21800 0.97401 0.96201 0.97218 0.91030 1.21691 0.99063 0.81845 0.97932 1.48172 1.08801 1.06535 1.69980 1.20506 0.86824 0.86145 0.76212 1.90657 1.14942 1.86832 1.50992 1.21563 0.99400 0.91382 1.04734 1.20365 0.96872 0.87047 1.05057 1.21784 0.89664 0.96217 0.88413 1.22791 1.04228 0.95475 1.03042 1.23225 0.89276 0.96086 0.92777 1.68264 1.14209 1.34651 1.07087 1.23307 0.94607 0.84174 0.92577 1.20591 0.93484 1.03601 0.96834 1.68105 1.09931 1.22861 1.22170 1.21764 0.78964 1.00464 0.99943 1.22502 1.02304 0.98824 0.95446 1.20187 0.89434 0.90680 0.92224 0.92196 1.42843 1.19731 1.65830 1.10310 1.19046 0.92130 1.26693 0.99166 0.89183 1.24635 0.96452 1.00284 0.97512 1.69687 1.16298 1.41239 1.30862 0.86669 0.79435 0.77829 0.85226 1.21058 1.21752 1.20479 0.93036 0.92845 0.93133 0.91500 0.91171 0.89247 0.91676 0.87725 0.89043 0.88953 0.88477 0.83416 0.81473 0.89423 0.89673 0.89472 0.90141 0.90797 0.90206 0.92979 0.80586 0.93059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.67 37.16 0.36 -1.55 16 2 C -0.11 -1.63 5.19 -26.73 -0.14 -1.77 16 3 C -0.11 -1.59 2.14 -90.50 -0.19 -1.78 16 4 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 5 C 0.12 1.82 5.03 -3.67 -0.02 1.80 16 6 N -0.60 -8.93 2.97 -172.71 -0.51 -9.45 16 7 C 0.51 7.34 7.70 -10.98 -0.08 7.26 16 8 O -0.55 -9.31 15.40 5.56 0.09 -9.23 16 9 C -0.13 -1.44 3.92 -27.88 -0.11 -1.55 16 10 C -0.06 -0.55 4.94 -27.88 -0.14 -0.69 16 11 C 0.19 1.87 6.21 -82.24 -0.51 1.36 16 12 C -0.23 -1.88 9.80 -39.31 -0.39 -2.27 16 13 C 0.15 1.23 11.30 -17.21 -0.19 1.04 16 14 N -0.53 -5.47 10.33 -10.73 -0.11 -5.58 16 15 C 0.32 3.41 7.64 -157.20 -1.20 2.20 16 16 C -0.09 -0.67 10.32 36.00 0.37 -0.30 16 17 N -0.52 -5.88 9.94 -6.99 -0.07 -5.95 16 18 C 0.11 1.62 6.08 -3.71 -0.02 1.60 16 19 C -0.15 -2.30 5.78 -26.61 -0.15 -2.45 16 20 C 0.18 3.20 2.53 -67.89 -0.17 3.03 16 21 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 22 N -0.74 -15.87 3.52 -53.38 -0.19 -16.06 16 23 C -0.24 -6.29 10.41 -15.06 -0.16 -6.44 16 24 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 25 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 26 N -0.93 -28.36 13.97 55.49 0.78 -27.59 16 27 Si 0.88 21.44 27.73 -169.99 -4.71 16.72 16 28 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 29 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 30 H -0.28 -6.41 6.52 56.52 0.37 -6.04 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.66 6.70 -51.93 -0.35 0.32 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 35 H 0.07 1.17 7.70 -51.93 -0.40 0.77 16 36 H 0.09 1.39 5.73 -51.93 -0.30 1.09 16 37 H 0.07 1.11 6.64 -51.93 -0.34 0.77 16 38 H 0.10 1.18 7.78 -51.93 -0.40 0.78 16 39 H 0.09 0.90 7.70 -51.93 -0.40 0.50 16 40 H 0.09 0.84 7.90 -51.93 -0.41 0.43 16 41 H 0.10 1.06 8.10 -51.93 -0.42 0.64 16 42 H 0.15 0.80 8.01 -52.49 -0.42 0.37 16 43 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 44 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.08 1.38 7.74 -51.93 -0.40 0.98 16 48 H 0.07 0.89 5.94 -51.93 -0.31 0.58 16 49 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 50 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 51 H 0.36 7.78 3.81 -40.82 -0.16 7.63 16 52 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 408.27 15.07 6.15 6.15 Total: -1.00 -32.46 408.27 -9.98 -42.44 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -8.55 Total: 8.94 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -2.84 Total: -0.40 kcal Atomic # 7 Polarization: -64.51 SS G_CDS: -0.11 Total: -64.62 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.09 Total: -9.23 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.71 Total: 16.72 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -32.46 -9.98 -42.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037887956.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.125 kcal (2) G-P(sol) polarization free energy of solvation -32.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds