Wall clock time and date at job start Wed Apr 1 2020 06:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09009 * 109.52235 * 305.07693 * 3 2 1 5 5 C 1.53187 * 109.49977 * 65.16029 * 3 2 1 6 6 N 1.46927 * 108.77285 * 174.58721 * 5 3 2 7 7 C 1.34785 * 120.62951 * 126.37211 * 6 5 3 8 8 O 1.21284 * 119.99694 * 359.97438 * 7 6 5 9 9 C 1.50694 * 120.00180 * 179.97438 * 7 6 5 10 10 C 1.52995 * 109.47140 * 180.02562 * 9 7 6 11 11 C 1.50702 * 109.46945 * 180.02562 * 10 9 7 12 12 C 1.38622 * 120.45028 * 125.00090 * 11 10 9 13 13 C 1.38577 * 118.40096 * 179.97438 * 12 11 10 14 14 N 1.32351 * 119.10242 * 359.97438 * 13 12 11 15 15 C 1.31774 * 120.82201 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.12261 * 180.02562 * 15 14 13 17 17 N 1.31816 * 121.75468 * 359.71572 * 15 14 13 18 18 C 1.46924 * 118.74314 * 306.39038 * 6 5 3 19 19 C 1.53195 * 108.77197 * 53.60867 * 18 6 5 20 20 C 1.53036 * 109.31520 * 305.36360 * 19 18 6 21 21 H 1.08997 * 109.45248 * 301.35782 * 20 19 18 22 22 N 1.46500 * 109.46251 * 181.38357 * 20 19 18 23 23 C 1.36935 * 119.99795 * 84.93172 * 22 20 19 24 24 H 1.08006 * 119.99956 * 0.02562 * 23 22 20 25 25 C 1.38809 * 120.00104 * 180.02562 * 23 22 20 26 26 N 1.31615 * 120.00002 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00116 * 180.02562 * 25 23 22 28 28 H 1.48506 * 109.47297 * 359.97438 * 27 25 23 29 29 H 1.48503 * 109.47261 * 239.99934 * 27 25 23 30 30 H 1.48500 * 109.47454 * 119.99927 * 27 25 23 31 31 H 1.09001 * 109.46617 * 300.00192 * 1 2 3 32 32 H 1.09002 * 109.47133 * 60.00043 * 1 2 3 33 33 H 1.08999 * 109.47258 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.47327 * 240.00014 * 2 1 3 35 35 H 1.09002 * 109.47133 * 119.99957 * 2 1 3 36 36 H 1.08998 * 109.58963 * 294.37473 * 5 3 2 37 37 H 1.09003 * 109.58732 * 54.66165 * 5 3 2 38 38 H 1.09008 * 109.46905 * 299.99946 * 9 7 6 39 39 H 1.09000 * 109.46837 * 59.99631 * 9 7 6 40 40 H 1.08998 * 109.47173 * 299.99756 * 10 9 7 41 41 H 1.09000 * 109.47683 * 59.99995 * 10 9 7 42 42 H 1.08005 * 120.79869 * 0.02562 * 12 11 10 43 43 H 1.07993 * 120.44661 * 179.97438 * 13 12 11 44 44 H 1.08992 * 109.47254 * 89.99322 * 16 15 14 45 45 H 1.08999 * 109.46717 * 209.99777 * 16 15 14 46 46 H 1.09001 * 109.46784 * 329.99073 * 16 15 14 47 47 H 1.08994 * 109.59020 * 173.40048 * 18 6 5 48 48 H 1.09003 * 109.58579 * 293.68537 * 18 6 5 49 49 H 1.09004 * 109.49353 * 185.41727 * 19 18 6 50 50 H 1.08998 * 109.49696 * 65.32066 * 19 18 6 51 51 H 0.96997 * 120.00022 * 264.93646 * 22 20 19 52 52 H 0.97004 * 120.00335 * 0.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9828 -0.8408 5 6 1.6385 2.1268 1.3104 6 7 2.2452 3.4644 1.3505 7 6 1.4857 4.5566 1.5671 8 8 0.2895 4.4408 1.7306 9 6 2.1228 5.9218 1.6059 10 6 1.0478 6.9790 1.8658 11 6 1.6849 8.3442 1.9041 12 6 1.2270 9.3565 1.0751 13 6 1.8434 10.5957 1.1458 14 7 2.8417 10.7705 1.9970 15 6 3.2504 9.7846 2.7699 16 6 4.3902 10.0262 3.7258 17 7 2.6849 8.5945 2.7337 18 6 3.6953 3.5889 1.1497 19 6 4.0736 2.8881 -0.1590 20 6 3.5653 1.4450 -0.1258 21 1 4.0009 0.9263 0.7282 22 7 3.9542 0.7619 -1.3621 23 6 5.1923 0.1862 -1.4659 24 1 5.8820 0.2354 -0.6361 25 6 5.5610 -0.4605 -2.6374 26 7 4.7207 -0.5200 -3.6487 27 14 7.2497 -1.2465 -2.7787 28 1 7.9988 -1.0410 -1.5130 29 1 7.9944 -0.6212 -3.9011 30 1 7.0987 -2.7015 -3.0345 31 1 -0.3632 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 0.5533 2.2162 1.3585 37 1 1.9944 1.5365 2.1549 38 1 2.8642 5.9541 2.4043 39 1 2.6081 6.1235 0.6510 40 1 0.3061 6.9468 1.0678 41 1 0.5629 6.7771 2.8209 42 1 0.4091 9.1839 0.3913 43 1 1.5136 11.4077 0.5148 44 1 3.9963 10.3750 4.6802 45 1 4.9403 9.0974 3.8772 46 1 5.0585 10.7807 3.3109 47 1 3.9671 4.6428 1.0917 48 1 4.2209 3.1212 1.9822 49 1 5.1578 2.8893 -0.2720 50 1 3.6193 3.4147 -0.9982 51 1 3.3346 0.7175 -2.1071 52 1 3.8439 -0.1116 -3.5755 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037887958.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:02:15 Heat of formation + Delta-G solvation = 4.525941 kcal Electronic energy + Delta-G solvation = -30462.148214 eV Core-core repulsion = 26461.216356 eV Total energy + Delta-G solvation = -4000.931858 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.44229 -40.23219 -38.01028 -35.41609 -34.89660 -34.00583 -33.74385 -31.90033 -31.79087 -29.46050 -28.99870 -28.61486 -26.35554 -24.59979 -23.88037 -23.43303 -22.81567 -21.97402 -20.96162 -19.88854 -18.89068 -17.92441 -17.40029 -17.31096 -16.32333 -16.03626 -15.80637 -15.50905 -15.42911 -15.00385 -14.42951 -14.17256 -14.00158 -13.70803 -13.64606 -13.48592 -13.38355 -13.20151 -13.11209 -12.91481 -12.68801 -12.56855 -12.42446 -12.16558 -11.80681 -11.69587 -11.57245 -11.38091 -11.17807 -10.95217 -10.82034 -10.73997 -10.60073 -10.32453 -10.26678 -10.08172 -9.88986 -9.79360 -9.68123 -9.54203 -9.19979 -8.92715 -8.52772 -7.06169 -6.12850 -3.13114 0.55462 0.71910 2.62511 3.00313 3.38418 3.49072 3.54439 3.55296 3.64392 3.74046 4.06827 4.45861 4.62930 4.67749 4.71026 4.78996 4.86698 4.95861 5.02771 5.11523 5.13560 5.18037 5.19370 5.25183 5.30803 5.40759 5.47507 5.50879 5.55668 5.56833 5.60971 5.63402 5.69370 5.76498 5.81274 5.93494 6.03874 6.05985 6.09434 6.16286 6.25656 6.30412 6.35425 6.47058 6.57267 6.69224 6.72434 6.83188 6.95263 7.45547 7.77522 7.78353 8.16986 8.72605 9.19207 10.05679 10.21060 11.35383 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012037 B = 0.002330 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.607443 B =12015.496102 C =13506.569474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.105 4.105 4 H 0.068 0.932 5 C 0.119 3.881 6 N -0.606 5.606 7 C 0.516 3.484 8 O -0.551 6.551 9 C -0.131 4.131 10 C -0.055 4.055 11 C 0.185 3.815 12 C -0.232 4.232 13 C 0.153 3.847 14 N -0.527 5.527 15 C 0.319 3.681 16 C -0.086 4.086 17 N -0.516 5.516 18 C 0.106 3.894 19 C -0.151 4.151 20 C 0.189 3.811 21 H 0.049 0.951 22 N -0.732 5.732 23 C -0.329 4.329 24 H 0.064 0.936 25 C -0.045 4.045 26 N -0.944 5.944 27 Si 1.083 2.917 28 H -0.295 1.295 29 H -0.294 1.294 30 H -0.293 1.293 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.079 0.921 35 H 0.058 0.942 36 H 0.091 0.909 37 H 0.065 0.935 38 H 0.104 0.896 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.149 0.851 43 H 0.169 0.831 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.085 0.915 47 H 0.078 0.922 48 H 0.068 0.932 49 H 0.076 0.924 50 H 0.057 0.943 51 H 0.367 0.633 52 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.391 18.791 13.369 23.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.125 4.125 4 H 0.086 0.914 5 C -0.003 4.003 6 N -0.338 5.338 7 C 0.304 3.696 8 O -0.430 6.430 9 C -0.171 4.171 10 C -0.094 4.094 11 C 0.039 3.961 12 C -0.254 4.254 13 C -0.013 4.013 14 N -0.242 5.242 15 C 0.052 3.948 16 C -0.144 4.144 17 N -0.232 5.232 18 C -0.017 4.017 19 C -0.192 4.192 20 C 0.079 3.921 21 H 0.067 0.933 22 N -0.373 5.373 23 C -0.460 4.460 24 H 0.082 0.918 25 C -0.242 4.242 26 N -0.590 5.590 27 Si 0.915 3.085 28 H -0.221 1.221 29 H -0.221 1.221 30 H -0.221 1.221 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.109 0.891 37 H 0.083 0.917 38 H 0.122 0.878 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.115 0.885 42 H 0.166 0.834 43 H 0.186 0.814 44 H 0.104 0.896 45 H 0.105 0.895 46 H 0.104 0.896 47 H 0.096 0.904 48 H 0.087 0.913 49 H 0.095 0.905 50 H 0.076 0.924 51 H 0.200 0.800 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.072 18.008 13.259 22.930 hybrid contribution -1.767 0.811 0.009 1.944 sum -6.838 18.818 13.268 24.019 Atomic orbital electron populations 1.21843 0.96650 1.01133 1.01367 1.21437 0.94497 0.95677 1.03307 1.21800 0.97620 0.96241 0.96880 0.91397 1.21722 0.99461 0.81557 0.97603 1.48168 1.08602 1.06784 1.70237 1.20524 0.86850 0.86125 0.76079 1.90671 1.14883 1.86761 1.50691 1.21563 0.99421 0.91371 1.04745 1.20365 0.96869 0.87038 1.05079 1.21772 0.89712 0.96197 0.88461 1.22808 1.04050 0.95443 1.03103 1.23236 0.89192 0.96149 0.92703 1.68264 1.14348 1.34483 1.07082 1.23298 0.94616 0.84220 0.92661 1.20579 0.93566 1.03818 0.96465 1.68092 1.10107 1.23011 1.21949 1.21880 0.79400 1.01253 0.99147 1.22661 1.02276 0.99183 0.95111 1.20115 0.90674 0.90466 0.90865 0.93318 1.42426 1.16485 1.65694 1.12735 1.20067 0.92402 1.31974 1.01563 0.91752 1.25720 1.05811 1.00280 0.92427 1.70817 1.08364 1.47655 1.32155 0.83177 0.74314 0.76278 0.74778 1.22147 1.22099 1.22054 0.93076 0.93031 0.93076 0.90270 0.92325 0.89099 0.91683 0.87770 0.88956 0.88895 0.88454 0.83354 0.81421 0.89638 0.89454 0.89600 0.90403 0.91335 0.90519 0.92396 0.80004 0.93314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.67 37.16 0.36 -1.72 16 2 C -0.11 -1.77 5.31 -26.73 -0.14 -1.91 16 3 C -0.11 -1.69 1.92 -90.50 -0.17 -1.87 16 4 H 0.07 1.18 8.14 -51.92 -0.42 0.75 16 5 C 0.12 1.70 5.33 -3.71 -0.02 1.68 16 6 N -0.61 -8.22 2.97 -172.77 -0.51 -8.73 16 7 C 0.52 6.95 7.70 -10.98 -0.08 6.86 16 8 O -0.55 -8.94 15.39 5.55 0.09 -8.86 16 9 C -0.13 -1.35 3.92 -27.89 -0.11 -1.46 16 10 C -0.06 -0.53 4.94 -27.88 -0.14 -0.67 16 11 C 0.18 1.80 6.20 -82.24 -0.51 1.29 16 12 C -0.23 -1.85 9.80 -39.31 -0.39 -2.24 16 13 C 0.15 1.23 11.30 -17.20 -0.19 1.03 16 14 N -0.53 -5.32 10.33 -10.73 -0.11 -5.43 16 15 C 0.32 3.21 7.64 -157.19 -1.20 2.01 16 16 C -0.09 -0.59 10.32 36.01 0.37 -0.22 16 17 N -0.52 -5.52 9.95 -6.98 -0.07 -5.59 16 18 C 0.11 1.35 6.34 -3.71 -0.02 1.32 16 19 C -0.15 -2.47 5.66 -26.61 -0.15 -2.62 16 20 C 0.19 3.51 2.19 -67.89 -0.15 3.36 16 21 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 22 N -0.73 -17.22 4.33 -53.38 -0.23 -17.45 16 23 C -0.33 -8.81 9.93 -15.06 -0.15 -8.96 16 24 H 0.06 1.71 7.83 -52.48 -0.41 1.30 16 25 C -0.04 -1.26 5.50 -17.43 -0.10 -1.36 16 26 N -0.94 -28.56 13.70 55.49 0.76 -27.80 16 27 Si 1.08 25.51 29.92 -169.99 -5.09 20.42 16 28 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 29 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 30 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 31 H 0.05 0.64 6.70 -51.93 -0.35 0.30 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.08 1.50 7.22 -51.93 -0.37 1.13 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.09 1.35 5.73 -51.93 -0.30 1.05 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.10 1.02 7.79 -51.92 -0.40 0.62 16 39 H 0.09 0.90 7.69 -51.93 -0.40 0.50 16 40 H 0.09 0.84 7.90 -51.93 -0.41 0.43 16 41 H 0.10 0.99 8.10 -51.93 -0.42 0.57 16 42 H 0.15 0.82 8.01 -52.48 -0.42 0.40 16 43 H 0.17 0.79 8.06 -52.49 -0.42 0.36 16 44 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.08 0.82 5.93 -51.93 -0.31 0.51 16 48 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 49 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 50 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 51 H 0.37 9.10 6.34 -40.82 -0.26 8.84 16 52 H 0.26 7.61 6.78 -40.82 -0.28 7.34 16 LS Contribution 413.30 15.07 6.23 6.23 Total: -1.00 -33.16 413.30 -10.35 -43.51 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -8.62 Total: 9.16 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -2.80 Total: -5.46 kcal Atomic # 7 Polarization: -64.84 SS G_CDS: -0.16 Total: -65.01 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.09 Total: -8.86 kcal Atomic # 14 Polarization: 25.51 SS G_CDS: -5.09 Total: 20.42 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -33.16 -10.35 -43.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037887958.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.041 kcal (2) G-P(sol) polarization free energy of solvation -33.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds