Wall clock time and date at job start Wed Apr 1 2020 06:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47332 * 2 1 4 4 H 1.09001 * 109.50015 * 55.06587 * 3 2 1 5 5 C 1.53194 * 109.49771 * 295.00067 * 3 2 1 6 6 N 1.46927 * 108.77758 * 185.41585 * 5 3 2 7 7 C 1.34778 * 120.62469 * 233.58834 * 6 5 3 8 8 O 1.21284 * 120.00317 * 359.97438 * 7 6 5 9 9 C 1.50706 * 119.99650 * 179.97438 * 7 6 5 10 10 C 1.52996 * 109.47115 * 179.97438 * 9 7 6 11 11 C 1.50692 * 109.47049 * 179.97438 * 10 9 7 12 12 C 1.38629 * 120.45130 * 125.27728 * 11 10 9 13 13 C 1.38570 * 118.40237 * 180.20183 * 12 11 10 14 14 N 1.32345 * 119.10512 * 359.52021 * 13 12 11 15 15 C 1.31785 * 120.81946 * 0.25858 * 14 13 12 16 16 C 1.50701 * 119.12458 * 179.97438 * 15 14 13 17 17 N 1.31808 * 121.75473 * 359.97438 * 15 14 13 18 18 C 1.46921 * 118.74038 * 53.85685 * 6 5 3 19 19 C 1.53626 * 108.54390 * 306.09758 * 18 6 5 20 20 C 1.53042 * 109.49811 * 175.16195 * 3 2 1 21 21 H 1.08997 * 109.45828 * 301.33580 * 20 3 2 22 22 N 1.46502 * 109.45951 * 61.29902 * 20 3 2 23 23 C 1.36943 * 119.99578 * 205.00050 * 22 20 3 24 24 H 1.07992 * 120.00017 * 359.97438 * 23 22 20 25 25 C 1.38813 * 119.99822 * 179.97438 * 23 22 20 26 26 N 1.31624 * 119.99938 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00020 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.46857 * 60.00105 * 27 25 23 29 29 H 1.48504 * 109.46886 * 179.97438 * 27 25 23 30 30 H 1.48497 * 109.47261 * 299.99969 * 27 25 23 31 31 H 1.09001 * 109.47317 * 59.99690 * 1 2 3 32 32 H 1.08997 * 109.47388 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46835 * 300.00513 * 1 2 3 34 34 H 1.08996 * 109.47248 * 239.99692 * 2 1 3 35 35 H 1.09003 * 109.47594 * 119.99854 * 2 1 3 36 36 H 1.08998 * 109.58762 * 65.62195 * 5 3 2 37 37 H 1.09001 * 109.70110 * 305.27309 * 5 3 2 38 38 H 1.09003 * 109.47010 * 59.99237 * 9 7 6 39 39 H 1.08999 * 109.46574 * 299.99557 * 9 7 6 40 40 H 1.08994 * 109.47255 * 59.99859 * 10 9 7 41 41 H 1.09000 * 109.46937 * 300.00117 * 10 9 7 42 42 H 1.07999 * 120.79646 * 359.97438 * 12 11 10 43 43 H 1.08002 * 120.45057 * 179.80607 * 13 12 11 44 44 H 1.08996 * 109.47360 * 89.99635 * 16 15 14 45 45 H 1.08998 * 109.47010 * 210.00482 * 16 15 14 46 46 H 1.09009 * 109.47105 * 330.00112 * 16 15 14 47 47 H 1.08998 * 109.58433 * 65.93054 * 18 6 5 48 48 H 1.08998 * 109.58570 * 186.35482 * 18 6 5 49 49 H 1.09000 * 109.63395 * 294.86312 * 19 18 6 50 50 H 1.09001 * 109.45546 * 174.74245 * 19 18 6 51 51 H 0.96994 * 120.00078 * 24.99162 * 22 20 3 52 52 H 0.96999 * 119.99937 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6066 1.9817 0.8423 5 6 1.6350 2.1280 -1.3088 6 7 2.2416 3.4656 -1.3494 7 6 1.4816 4.5579 -1.5638 8 8 0.2853 4.4420 -1.7259 9 6 2.1185 5.9232 -1.6021 10 6 1.0431 6.9806 -1.8594 11 6 1.6798 8.3458 -1.8971 12 6 1.4988 9.1755 -2.9929 13 6 2.1073 10.4204 -2.9847 14 7 2.8282 10.7776 -1.9339 15 6 2.9747 9.9642 -0.9075 16 6 3.8045 10.4098 0.2689 17 7 2.4147 8.7713 -0.8823 18 6 3.6930 3.5893 -1.1579 19 6 4.0741 2.8880 0.1547 20 6 3.5656 1.4449 0.1217 21 1 3.8573 0.9359 1.0403 22 7 4.1480 0.7485 -1.0282 23 6 5.3861 0.1726 -0.9245 24 1 5.9333 0.2322 0.0046 25 6 5.9377 -0.4877 -2.0138 26 7 5.2710 -0.5599 -3.1464 27 14 7.6269 -1.2726 -1.8728 28 1 7.6068 -2.3014 -0.8021 29 1 7.9858 -1.9106 -3.1649 30 1 8.6308 -0.2305 -1.5391 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 0.5497 2.2174 -1.3539 37 1 1.9887 1.5405 -2.1561 38 1 2.8589 5.9564 -2.4013 39 1 2.6049 6.1240 -0.6476 40 1 0.3024 6.9474 -1.0605 41 1 0.5569 6.7795 -2.8141 42 1 0.9010 8.8577 -3.8343 43 1 1.9909 11.0921 -3.8224 44 1 3.1669 10.9197 0.9910 45 1 4.2637 9.5405 0.7397 46 1 4.5833 11.0915 -0.0732 47 1 4.2130 3.1178 -1.9917 48 1 3.9659 4.6432 -1.1033 49 1 3.6220 3.4138 0.9956 50 1 5.1585 2.8892 0.2655 51 1 3.6566 0.6952 -1.8627 52 1 5.6563 -1.0217 -3.9074 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037887960.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:02:20 Heat of formation + Delta-G solvation = 6.491150 kcal Electronic energy + Delta-G solvation = -30849.608192 eV Core-core repulsion = 26848.761551 eV Total energy + Delta-G solvation = -4000.846641 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.36105 -40.06474 -37.92866 -35.29952 -34.42107 -33.75239 -33.66724 -31.75519 -31.64259 -29.41180 -28.88623 -28.50238 -26.37385 -24.57197 -23.81261 -23.49931 -23.21451 -21.90981 -20.78284 -19.43069 -18.20061 -17.80911 -17.42600 -17.07872 -16.17056 -15.89189 -15.57168 -15.41942 -15.35830 -14.71456 -14.40910 -14.03585 -13.99461 -13.74640 -13.45972 -13.30607 -13.25842 -13.13832 -12.84276 -12.67627 -12.61314 -12.43734 -12.24318 -12.18959 -11.66406 -11.49761 -11.33861 -11.10116 -11.08513 -10.95834 -10.80899 -10.76063 -10.67191 -10.29891 -10.26651 -10.20054 -9.78821 -9.67810 -9.55649 -9.51887 -9.44339 -8.92995 -8.20897 -6.98920 -5.80477 -3.08826 0.63012 0.79846 2.84073 3.23989 3.40604 3.45981 3.46538 3.47409 3.63060 3.81864 4.17352 4.56093 4.59883 4.77052 4.84741 4.91514 4.98422 5.11216 5.13344 5.20792 5.26244 5.29106 5.35295 5.41392 5.53384 5.56561 5.58172 5.59711 5.63769 5.70281 5.80118 5.81590 5.84249 5.89153 5.92855 6.10433 6.15986 6.17152 6.20597 6.35917 6.39669 6.42096 6.57088 6.64435 6.71584 6.77050 6.77765 6.94644 7.01926 7.66756 7.73458 7.85375 8.38167 8.39510 9.49725 10.06575 10.41703 11.41857 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011301 B = 0.002585 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.103046 B =10828.614147 C =12193.899565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.102 4.102 4 H 0.065 0.935 5 C 0.118 3.882 6 N -0.600 5.600 7 C 0.514 3.486 8 O -0.557 6.557 9 C -0.130 4.130 10 C -0.055 4.055 11 C 0.186 3.814 12 C -0.233 4.233 13 C 0.152 3.848 14 N -0.528 5.528 15 C 0.319 3.681 16 C -0.086 4.086 17 N -0.515 5.515 18 C 0.113 3.887 19 C -0.149 4.149 20 C 0.178 3.822 21 H 0.050 0.950 22 N -0.718 5.718 23 C -0.237 4.237 24 H 0.069 0.931 25 C -0.011 4.011 26 N -0.933 5.933 27 Si 0.904 3.096 28 H -0.287 1.287 29 H -0.292 1.292 30 H -0.287 1.287 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.104 0.896 40 H 0.097 0.903 41 H 0.092 0.908 42 H 0.148 0.852 43 H 0.168 0.832 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.085 0.915 47 H 0.085 0.915 48 H 0.070 0.930 49 H 0.049 0.951 50 H 0.073 0.927 51 H 0.384 0.616 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.811 18.482 3.739 20.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.122 4.122 4 H 0.084 0.916 5 C -0.004 4.004 6 N -0.331 5.331 7 C 0.302 3.698 8 O -0.437 6.437 9 C -0.170 4.170 10 C -0.093 4.093 11 C 0.040 3.960 12 C -0.255 4.255 13 C -0.014 4.014 14 N -0.243 5.243 15 C 0.052 3.948 16 C -0.144 4.144 17 N -0.231 5.231 18 C -0.010 4.010 19 C -0.190 4.190 20 C 0.068 3.932 21 H 0.068 0.932 22 N -0.361 5.361 23 C -0.368 4.368 24 H 0.087 0.913 25 C -0.208 4.208 26 N -0.581 5.581 27 Si 0.735 3.265 28 H -0.214 1.214 29 H -0.218 1.218 30 H -0.214 1.214 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.109 0.891 39 H 0.122 0.878 40 H 0.115 0.885 41 H 0.111 0.889 42 H 0.166 0.834 43 H 0.185 0.815 44 H 0.103 0.897 45 H 0.106 0.894 46 H 0.104 0.896 47 H 0.103 0.897 48 H 0.088 0.912 49 H 0.068 0.932 50 H 0.092 0.908 51 H 0.219 0.781 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.711 18.622 4.458 20.642 hybrid contribution 0.488 -0.728 -1.096 1.404 sum -7.223 17.894 3.362 19.587 Atomic orbital electron populations 1.21850 0.96831 1.01006 1.01342 1.21417 0.94263 0.95791 1.03344 1.21739 0.97342 0.96095 0.97063 0.91612 1.21677 0.98745 0.81709 0.98237 1.48136 1.08685 1.06596 1.69732 1.20475 0.86855 0.86122 0.76369 1.90653 1.14957 1.86833 1.51231 1.21550 0.98955 0.91493 1.05030 1.20367 0.97180 0.86786 1.05009 1.21804 0.89861 0.96025 0.88320 1.22802 1.04384 0.96935 1.01343 1.23219 0.89020 0.93835 0.95303 1.68261 1.18045 1.36142 1.01822 1.23295 0.92214 0.85606 0.93696 1.20579 0.98418 1.02626 0.92805 1.68101 1.10069 1.16453 1.28437 1.21840 0.79044 1.00084 1.00008 1.22593 1.01761 0.99249 0.95442 1.20222 0.89772 0.90654 0.92562 0.93174 1.42470 1.18995 1.64032 1.10587 1.19170 0.93579 1.27035 0.97057 0.91332 1.24698 0.98524 1.01493 0.96038 1.69639 1.38157 1.48055 1.02261 0.86318 0.84387 0.79196 0.76556 1.21379 1.21829 1.21374 0.92789 0.93187 0.93399 0.90510 0.92061 0.89634 0.90846 0.89130 0.87820 0.88502 0.88926 0.83381 0.81485 0.89671 0.89414 0.89649 0.89708 0.91174 0.93237 0.90812 0.78107 0.93492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.67 37.15 0.36 -1.72 16 2 C -0.11 -1.75 5.19 -26.73 -0.14 -1.89 16 3 C -0.10 -1.65 2.14 -90.50 -0.19 -1.84 16 4 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 5 C 0.12 1.97 5.02 -3.71 -0.02 1.96 16 6 N -0.60 -9.44 2.97 -172.50 -0.51 -9.95 16 7 C 0.51 7.78 7.70 -10.98 -0.08 7.69 16 8 O -0.56 -9.85 15.40 5.55 0.09 -9.77 16 9 C -0.13 -1.53 3.91 -27.88 -0.11 -1.64 16 10 C -0.06 -0.59 4.93 -27.89 -0.14 -0.72 16 11 C 0.19 1.96 6.21 -82.24 -0.51 1.45 16 12 C -0.23 -2.00 9.80 -39.31 -0.39 -2.39 16 13 C 0.15 1.30 11.30 -17.21 -0.19 1.10 16 14 N -0.53 -5.63 10.33 -10.73 -0.11 -5.74 16 15 C 0.32 3.44 7.64 -157.19 -1.20 2.24 16 16 C -0.09 -0.66 10.32 36.01 0.37 -0.28 16 17 N -0.52 -5.96 9.94 -6.98 -0.07 -6.03 16 18 C 0.11 1.75 6.11 -3.49 -0.02 1.72 16 19 C -0.15 -2.41 5.79 -26.38 -0.15 -2.57 16 20 C 0.18 3.26 2.53 -67.89 -0.17 3.08 16 21 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 22 N -0.72 -16.21 3.71 -53.38 -0.20 -16.41 16 23 C -0.24 -6.10 9.93 -15.06 -0.15 -6.25 16 24 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 25 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 26 N -0.93 -26.83 13.06 55.49 0.72 -26.11 16 27 Si 0.90 21.62 29.55 -169.99 -5.02 16.60 16 28 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 29 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 30 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 31 H 0.05 0.74 6.70 -51.93 -0.35 0.39 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 1.42 7.69 -51.93 -0.40 1.02 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.09 1.44 5.72 -51.93 -0.30 1.14 16 37 H 0.07 1.37 6.65 -51.93 -0.35 1.02 16 38 H 0.09 1.00 7.93 -51.93 -0.41 0.59 16 39 H 0.10 1.20 7.54 -51.93 -0.39 0.80 16 40 H 0.10 1.09 8.10 -51.93 -0.42 0.67 16 41 H 0.09 0.92 7.90 -51.93 -0.41 0.51 16 42 H 0.15 0.90 8.01 -52.49 -0.42 0.48 16 43 H 0.17 0.86 8.06 -52.49 -0.42 0.44 16 44 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 47 H 0.08 1.56 7.74 -51.93 -0.40 1.16 16 48 H 0.07 0.91 5.93 -51.93 -0.31 0.60 16 49 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 50 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 51 H 0.38 9.32 5.95 -40.82 -0.24 9.08 16 52 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 411.40 15.07 6.20 6.20 Total: -1.00 -31.08 411.40 -10.33 -41.41 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -8.59 Total: 10.27 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -2.83 Total: -0.46 kcal Atomic # 7 Polarization: -64.08 SS G_CDS: -0.17 Total: -64.24 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -31.08 -10.33 -41.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037887960.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.897 kcal (2) G-P(sol) polarization free energy of solvation -31.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds