Wall clock time and date at job start Wed Apr 1 2020 05:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47074 * 2 1 4 4 H 1.08995 * 109.52865 * 54.91620 * 3 2 1 5 5 C 1.53195 * 109.49645 * 294.83352 * 3 2 1 6 6 N 1.46929 * 108.77160 * 185.41506 * 5 3 2 7 7 C 1.34781 * 120.62748 * 233.62841 * 6 5 3 8 8 O 1.21518 * 119.99811 * 174.91515 * 7 6 5 9 9 C 1.48142 * 119.99967 * 354.91592 * 7 6 5 10 10 N 1.33035 * 120.09385 * 284.08361 * 9 7 6 11 11 C 1.31781 * 119.92580 * 179.74665 * 10 9 7 12 12 C 1.50697 * 119.93894 * 180.27954 * 11 10 9 13 13 C 1.38776 * 120.11940 * 0.55895 * 11 10 9 14 14 C 1.50707 * 119.90339 * 179.72285 * 13 11 10 15 15 N 1.32110 * 120.19340 * 359.69624 * 13 11 10 16 16 C 1.32100 * 120.07204 * 0.02562 * 15 13 11 17 17 C 1.50699 * 120.06307 * 180.02562 * 16 15 13 18 18 C 1.46917 * 118.74161 * 53.61277 * 6 5 3 19 19 C 1.53195 * 108.77544 * 306.38947 * 18 6 5 20 20 C 1.53034 * 109.31261 * 54.63186 * 19 18 6 21 21 H 1.09003 * 109.45993 * 178.62892 * 20 19 18 22 22 N 1.46500 * 109.45946 * 58.65954 * 20 19 18 23 23 C 1.36938 * 120.00228 * 84.99715 * 22 20 19 24 24 H 1.08005 * 119.99706 * 0.02562 * 23 22 20 25 25 C 1.38806 * 120.00318 * 180.02562 * 23 22 20 26 26 N 1.31620 * 119.99956 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 120.00216 * 180.02562 * 25 23 22 28 28 H 1.48493 * 109.47065 * 59.99718 * 27 25 23 29 29 H 1.48497 * 109.47166 * 299.99560 * 27 25 23 30 30 H 1.48502 * 109.46978 * 179.97438 * 27 25 23 31 31 H 1.09001 * 109.47151 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47366 * 300.00458 * 1 2 3 33 33 H 1.09004 * 109.46872 * 60.00375 * 1 2 3 34 34 H 1.09002 * 109.47600 * 239.99468 * 2 1 3 35 35 H 1.09004 * 109.46872 * 119.99625 * 2 1 3 36 36 H 1.08998 * 109.58709 * 65.63346 * 5 3 2 37 37 H 1.09000 * 109.58598 * 305.20088 * 5 3 2 38 38 H 1.09000 * 109.46808 * 270.27896 * 12 11 10 39 39 H 1.08997 * 109.47222 * 30.27618 * 12 11 10 40 40 H 1.08996 * 109.47053 * 150.27827 * 12 11 10 41 41 H 1.09001 * 109.46862 * 269.97679 * 14 13 11 42 42 H 1.09000 * 109.46875 * 29.97542 * 14 13 11 43 43 H 1.08994 * 109.47203 * 149.97618 * 14 13 11 44 44 H 1.09002 * 109.47340 * 274.80766 * 17 16 15 45 45 H 1.09007 * 109.46978 * 34.80530 * 17 16 15 46 46 H 1.09003 * 109.47429 * 154.80368 * 17 16 15 47 47 H 1.09006 * 109.58962 * 186.60262 * 18 6 5 48 48 H 1.08997 * 109.70614 * 66.24733 * 18 6 5 49 49 H 1.09003 * 109.49667 * 294.68136 * 19 18 6 50 50 H 1.09000 * 109.52468 * 174.60824 * 19 18 6 51 51 H 0.97004 * 120.00236 * 264.99923 * 22 20 19 52 52 H 0.97000 * 119.99948 * 359.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9828 0.8406 5 6 1.6386 2.1267 -1.3106 6 7 2.2452 3.4643 -1.3507 7 6 1.4857 4.5565 -1.5674 8 8 1.9826 5.6638 -1.5067 9 6 0.0453 4.4070 -1.8795 10 7 -0.3373 4.0128 -3.0912 11 6 -1.6193 3.8761 -3.3637 12 6 -2.0528 3.4235 -4.7342 13 6 -2.5711 4.1537 -2.3927 14 6 -4.0362 4.0017 -2.7116 15 7 -2.1967 4.5503 -1.1894 16 6 -0.9134 4.6846 -0.9063 17 6 -0.4865 5.1365 0.4665 18 6 3.6953 3.5887 -1.1499 19 6 4.0737 2.8880 0.1589 20 6 3.5652 1.4450 0.1258 21 1 3.8544 0.9369 1.0458 22 7 4.1507 0.7474 -1.0217 23 6 5.3880 0.1705 -0.9139 24 1 5.9319 0.2294 0.0173 25 6 5.9430 -0.4900 -2.0013 26 7 5.2799 -0.5622 -3.1359 27 14 7.6304 -1.2776 -1.8539 28 1 7.6045 -2.3069 -0.7839 29 1 8.6345 -0.2371 -1.5156 30 1 7.9935 -1.9153 -3.1449 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 0.5534 2.2161 -1.3586 37 1 1.9966 1.5376 -2.1549 38 1 -2.1907 4.2929 -5.3771 39 1 -1.2887 2.7737 -5.1608 40 1 -2.9924 2.8767 -4.6559 41 1 -4.4230 4.9437 -3.1006 42 1 -4.1660 3.2192 -3.4591 43 1 -4.5792 3.7325 -1.8057 44 1 -0.4996 6.2256 0.5110 45 1 -1.1731 4.7341 1.2113 46 1 0.5221 4.7767 0.6702 47 1 3.9671 4.6427 -1.0919 48 1 4.2229 3.1205 -1.9808 49 1 3.6193 3.4147 0.9981 50 1 5.1577 2.8894 0.2726 51 1 3.6621 0.6942 -1.8580 52 1 4.4032 -0.1542 -3.2121 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037891871.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:19 Heat of formation + Delta-G solvation = 12.818592 kcal Electronic energy + Delta-G solvation = -32517.381937 eV Core-core repulsion = 28516.809675 eV Total energy + Delta-G solvation = -4000.572262 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.72873 -39.94717 -38.02539 -35.23989 -34.70430 -34.39226 -33.96464 -32.01089 -30.58708 -29.75777 -29.01164 -28.35468 -26.58570 -25.00214 -24.13323 -23.58716 -23.36761 -22.27568 -20.90787 -20.07930 -18.69597 -18.40185 -17.40789 -17.33161 -16.37781 -15.63927 -15.47318 -15.15714 -14.82776 -14.50376 -14.33327 -13.92461 -13.78525 -13.68296 -13.55341 -13.44411 -13.37904 -13.26962 -13.17315 -12.87005 -12.77079 -12.52297 -12.46346 -12.25149 -12.04724 -11.96562 -11.75385 -11.70352 -11.24111 -11.06596 -10.90821 -10.76671 -10.60648 -10.41544 -10.34462 -10.18492 -10.02673 -9.92813 -9.24839 -9.17862 -9.04462 -8.93573 -8.40495 -7.06132 -6.11379 -3.12084 0.35108 0.84752 2.41141 2.91607 3.28625 3.50734 3.53447 3.65510 3.70997 3.90045 4.10638 4.27581 4.64333 4.65795 4.66478 4.87366 4.90303 5.04107 5.08239 5.13504 5.15911 5.29332 5.34755 5.37324 5.41889 5.43399 5.47960 5.49670 5.54283 5.55153 5.64072 5.66326 5.68400 5.72802 5.80994 5.87667 5.96073 6.07241 6.12291 6.15840 6.20099 6.32307 6.41170 6.44976 6.60683 6.65857 6.76055 6.86589 7.00271 7.45360 7.50033 7.79184 8.08980 8.72909 9.18888 10.05401 10.20393 11.36085 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014139 B = 0.003280 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.913088 B = 8535.606370 C = 8810.610130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.109 4.109 3 C -0.106 4.106 4 H 0.069 0.931 5 C 0.121 3.879 6 N -0.585 5.585 7 C 0.581 3.419 8 O -0.531 6.531 9 C 0.051 3.949 10 N -0.403 5.403 11 C 0.075 3.925 12 C -0.103 4.103 13 C 0.093 3.907 14 C -0.104 4.104 15 N -0.435 5.435 16 C 0.113 3.887 17 C -0.102 4.102 18 C 0.120 3.880 19 C -0.149 4.149 20 C 0.185 3.815 21 H 0.054 0.946 22 N -0.729 5.729 23 C -0.329 4.329 24 H 0.064 0.936 25 C -0.043 4.043 26 N -0.942 5.942 27 Si 1.077 2.923 28 H -0.296 1.296 29 H -0.296 1.296 30 H -0.286 1.286 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.046 0.954 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.085 0.915 46 H 0.078 0.922 47 H 0.083 0.917 48 H 0.083 0.917 49 H 0.050 0.950 50 H 0.077 0.923 51 H 0.366 0.634 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.712 7.602 3.746 20.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.147 4.147 3 C -0.126 4.126 4 H 0.087 0.913 5 C -0.001 4.001 6 N -0.316 5.316 7 C 0.365 3.635 8 O -0.408 6.408 9 C -0.092 4.092 10 N -0.120 5.120 11 C -0.068 4.068 12 C -0.161 4.161 13 C -0.049 4.049 14 C -0.161 4.161 15 N -0.150 5.150 16 C -0.027 4.027 17 C -0.160 4.160 18 C -0.001 4.001 19 C -0.190 4.190 20 C 0.075 3.925 21 H 0.072 0.928 22 N -0.373 5.373 23 C -0.460 4.460 24 H 0.082 0.918 25 C -0.241 4.241 26 N -0.587 5.587 27 Si 0.908 3.092 28 H -0.224 1.224 29 H -0.223 1.223 30 H -0.212 1.212 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.100 0.900 44 H 0.107 0.893 45 H 0.104 0.896 46 H 0.097 0.903 47 H 0.101 0.899 48 H 0.101 0.899 49 H 0.069 0.931 50 H 0.096 0.904 51 H 0.201 0.799 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -17.073 7.312 3.162 18.841 hybrid contribution -1.243 0.880 0.556 1.621 sum -18.316 8.192 3.717 20.406 Atomic orbital electron populations 1.21840 0.96853 1.01279 1.00925 1.21416 0.94153 0.95636 1.03545 1.21808 0.98049 0.96179 0.96531 0.91262 1.21756 0.96803 0.82457 0.99134 1.48037 1.08861 1.06061 1.68600 1.17617 0.83945 0.84709 0.77203 1.90786 1.72595 1.24917 1.52452 1.21908 0.96049 0.99943 0.91291 1.68311 1.17781 1.07948 1.17916 1.22182 0.88700 0.97653 0.98247 1.20789 1.02501 1.02339 0.90438 1.22335 0.98381 0.94653 0.89502 1.20809 0.88613 1.03352 1.03374 1.68181 1.16806 1.10759 1.19289 1.22144 0.88453 0.94723 0.97360 1.20748 1.02228 1.02712 0.90333 1.21662 0.77513 1.01484 0.99474 1.22523 1.02108 0.98754 0.95574 1.20153 0.89062 0.90814 0.92503 0.92826 1.42466 1.19556 1.65118 1.10161 1.20001 0.94729 1.31598 0.99648 0.91809 1.25685 1.05517 1.00164 0.92685 1.70903 1.14457 1.47562 1.25823 0.83270 0.74669 0.75863 0.75349 1.22387 1.22338 1.21153 0.92825 0.93223 0.93511 0.90748 0.91572 0.91432 0.90541 0.89805 0.89744 0.89731 0.89695 0.89617 0.89983 0.89300 0.89597 0.90286 0.89901 0.89913 0.93123 0.90443 0.79936 0.93557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.67 37.16 0.36 -1.53 16 2 C -0.11 -1.65 5.19 -26.73 -0.14 -1.79 16 3 C -0.11 -1.64 2.14 -90.50 -0.19 -1.83 16 4 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 5 C 0.12 1.94 4.92 -3.71 -0.02 1.93 16 6 N -0.58 -9.91 2.97 -173.77 -0.52 -10.43 16 7 C 0.58 10.14 5.72 -12.19 -0.07 10.07 16 8 O -0.53 -10.52 16.52 5.35 0.09 -10.43 16 9 C 0.05 0.79 4.48 -82.85 -0.37 0.42 16 10 N -0.40 -6.15 10.35 -5.88 -0.06 -6.21 16 11 C 0.08 0.89 6.79 -82.42 -0.56 0.34 16 12 C -0.10 -0.83 9.78 36.00 0.35 -0.48 16 13 C 0.09 1.03 6.79 -82.27 -0.56 0.47 16 14 C -0.10 -0.68 9.78 36.01 0.35 -0.33 16 15 N -0.43 -5.56 10.34 -5.23 -0.05 -5.61 16 16 C 0.11 1.56 6.82 -82.04 -0.56 1.00 16 17 C -0.10 -1.17 9.89 36.01 0.36 -0.82 16 18 C 0.12 2.16 6.18 -3.71 -0.02 2.13 16 19 C -0.15 -2.57 5.78 -26.61 -0.15 -2.73 16 20 C 0.19 3.42 2.53 -67.89 -0.17 3.24 16 21 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 22 N -0.73 -16.61 3.72 -53.39 -0.20 -16.81 16 23 C -0.33 -8.66 9.93 -15.06 -0.15 -8.81 16 24 H 0.06 1.67 7.83 -52.48 -0.41 1.26 16 25 C -0.04 -1.19 5.50 -17.43 -0.10 -1.29 16 26 N -0.94 -28.12 13.70 55.49 0.76 -27.36 16 27 Si 1.08 25.34 29.92 -169.99 -5.09 20.25 16 28 H -0.30 -6.68 7.11 56.52 0.40 -6.28 16 29 H -0.30 -6.70 7.11 56.52 0.40 -6.30 16 30 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.59 6.70 -51.93 -0.35 0.24 16 34 H 0.07 1.31 7.70 -51.93 -0.40 0.91 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.07 1.02 5.08 -51.93 -0.26 0.75 16 37 H 0.08 1.38 6.64 -51.93 -0.34 1.04 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.08 0.44 5.94 -51.93 -0.31 0.14 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.09 0.38 5.94 -51.93 -0.31 0.07 16 43 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.08 0.96 6.90 -51.93 -0.36 0.60 16 47 H 0.08 1.48 7.00 -51.93 -0.36 1.12 16 48 H 0.08 1.70 7.74 -51.93 -0.40 1.30 16 49 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 51 H 0.37 8.74 4.78 -40.82 -0.19 8.55 16 52 H 0.25 7.46 6.77 -40.82 -0.28 7.18 16 LS Contribution 405.54 15.07 6.11 6.11 Total: -1.00 -32.55 405.54 -8.87 -41.41 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -8.27 Total: 9.07 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -1.64 Total: 0.00 kcal Atomic # 7 Polarization: -66.35 SS G_CDS: -0.07 Total: -66.42 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 14 Polarization: 25.34 SS G_CDS: -5.09 Total: 20.25 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.55 -8.87 -41.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037891871.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.232 kcal (2) G-P(sol) polarization free energy of solvation -32.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds