Wall clock time and date at job start Wed Apr 1 2020 05:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47198 * 2 1 4 4 H 1.08995 * 109.49932 * 304.93936 * 3 2 1 5 5 C 1.53197 * 109.49495 * 65.00433 * 3 2 1 6 6 N 1.46926 * 108.77572 * 174.58944 * 5 3 2 7 7 C 1.34775 * 120.63668 * 126.37309 * 6 5 3 8 8 O 1.21523 * 119.99347 * 354.92041 * 7 6 5 9 9 C 1.48138 * 120.00292 * 174.92885 * 7 6 5 10 10 N 1.33036 * 120.09550 * 284.62678 * 9 7 6 11 11 C 1.31772 * 119.92491 * 180.02562 * 10 9 7 12 12 C 1.50702 * 119.93604 * 179.97438 * 11 10 9 13 13 C 1.38770 * 120.12578 * 359.97438 * 11 10 9 14 14 C 1.50701 * 119.90635 * 180.02562 * 13 11 10 15 15 N 1.32110 * 120.19173 * 0.02657 * 13 11 10 16 16 C 1.32109 * 120.07386 * 359.66353 * 15 13 11 17 17 C 1.50696 * 120.06673 * 180.29923 * 16 15 13 18 18 C 1.46928 * 118.73437 * 306.38782 * 6 5 3 19 19 C 1.53188 * 108.77687 * 53.61045 * 18 6 5 20 20 C 1.53037 * 109.49846 * 184.84044 * 3 2 1 21 21 H 1.08999 * 109.46153 * 298.70563 * 20 3 2 22 22 N 1.46500 * 109.46147 * 58.66891 * 20 3 2 23 23 C 1.36932 * 119.99937 * 205.00238 * 22 20 3 24 24 H 1.08007 * 120.00468 * 359.97438 * 23 22 20 25 25 C 1.38819 * 120.00137 * 179.97438 * 23 22 20 26 26 N 1.31615 * 119.99341 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 120.00178 * 180.02562 * 25 23 22 28 28 H 1.48494 * 109.47342 * 89.99896 * 27 25 23 29 29 H 1.48502 * 109.46962 * 209.99971 * 27 25 23 30 30 H 1.48506 * 109.47045 * 329.99791 * 27 25 23 31 31 H 1.08998 * 109.47205 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47215 * 59.99812 * 1 2 3 33 33 H 1.09001 * 109.47090 * 299.99681 * 1 2 3 34 34 H 1.08994 * 109.46923 * 120.00836 * 2 1 3 35 35 H 1.09006 * 109.46770 * 240.00631 * 2 1 3 36 36 H 1.09006 * 109.58594 * 294.37410 * 5 3 2 37 37 H 1.08998 * 109.58517 * 54.79764 * 5 3 2 38 38 H 1.08999 * 109.46879 * 89.99894 * 12 11 10 39 39 H 1.08993 * 109.47040 * 209.99898 * 12 11 10 40 40 H 1.09002 * 109.46999 * 330.00232 * 12 11 10 41 41 H 1.08995 * 109.47470 * 90.00034 * 14 13 11 42 42 H 1.08998 * 109.47155 * 210.00336 * 14 13 11 43 43 H 1.09001 * 109.47122 * 330.00149 * 14 13 11 44 44 H 1.09000 * 109.47122 * 275.14089 * 17 16 15 45 45 H 1.09001 * 109.47169 * 35.13962 * 17 16 15 46 46 H 1.08996 * 109.47642 * 155.14192 * 17 16 15 47 47 H 1.08999 * 109.58467 * 173.39803 * 18 6 5 48 48 H 1.08998 * 109.59126 * 293.82162 * 18 6 5 49 49 H 1.08998 * 109.49778 * 65.31734 * 19 18 6 50 50 H 1.08999 * 109.50047 * 185.37924 * 19 18 6 51 51 H 0.97003 * 119.99857 * 24.99209 * 22 20 3 52 52 H 0.97010 * 119.99445 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6065 1.9816 -0.8422 5 6 1.6351 2.1279 1.3089 6 7 2.2415 3.4655 1.3495 7 6 1.4816 4.5579 1.5632 8 8 0.2729 4.4530 1.6324 9 6 2.1197 5.8864 1.7134 10 7 2.7457 6.2017 2.8441 11 6 3.3117 7.3845 2.9743 12 6 4.0205 7.7422 4.2552 13 6 3.2564 8.3014 1.9341 14 6 3.9059 9.6525 2.0881 15 7 2.6360 7.9933 0.8092 16 6 2.0711 6.8074 0.6680 17 6 1.3693 6.4537 -0.6177 18 6 3.6922 3.5897 1.1523 19 6 4.0741 2.8879 -0.1547 20 6 3.5655 1.4449 -0.1217 21 1 3.9989 0.9267 0.7337 22 7 3.9578 0.7609 -1.3564 23 6 5.1961 0.1850 -1.4564 24 1 5.8839 0.2354 -0.6252 25 6 5.5676 -0.4636 -2.6262 26 7 4.7292 -0.5254 -3.6389 27 14 7.2566 -1.2497 -2.7623 28 1 7.1860 -2.6583 -2.2975 29 1 7.7050 -1.2175 -4.1777 30 1 8.2217 -0.4983 -1.9201 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.8933 -0.5138 -0.8901 36 1 0.5497 2.2172 1.3540 37 1 1.9909 1.5395 2.1547 38 1 5.0683 7.4506 4.1843 39 1 3.9529 8.8175 4.4197 40 1 3.5527 7.2171 5.0881 41 1 4.9392 9.6002 1.7453 42 1 3.3625 10.3868 1.4934 43 1 3.8857 9.9479 3.1371 44 1 0.3446 6.8239 -0.5861 45 1 1.8950 6.9105 -1.4562 46 1 1.3606 5.3707 -0.7410 47 1 3.9641 4.6437 1.0941 48 1 4.2157 3.1207 1.9853 49 1 3.6219 3.4139 -0.9956 50 1 5.1584 2.8896 -0.2652 51 1 3.3401 0.7158 -2.1031 52 1 4.9890 -0.9784 -4.4565 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037891884.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:24 Heat of formation + Delta-G solvation = 9.623380 kcal Electronic energy + Delta-G solvation = -31698.854150 eV Core-core repulsion = 27698.143333 eV Total energy + Delta-G solvation = -4000.710817 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.75998 -39.94738 -37.85301 -35.27327 -34.91995 -34.49126 -33.76068 -31.76943 -30.60081 -29.59746 -29.53924 -28.55195 -26.59246 -25.03678 -23.94853 -23.72136 -22.89225 -22.13272 -20.87199 -20.12962 -19.28995 -18.44142 -17.45235 -17.07625 -16.44100 -15.65180 -15.50531 -15.09550 -14.82112 -14.48232 -14.04409 -13.98768 -13.79642 -13.69071 -13.43782 -13.37853 -13.34752 -13.27933 -13.04748 -12.94427 -12.72917 -12.52132 -12.44064 -12.13794 -12.07585 -11.88168 -11.79621 -11.64856 -11.32241 -11.07286 -10.96286 -10.87592 -10.73859 -10.43800 -10.24619 -10.22450 -10.17821 -9.75884 -9.63226 -9.30216 -9.08287 -8.92853 -8.57062 -6.99789 -5.80458 -3.09207 0.31949 0.81117 2.33923 2.80781 3.24779 3.40300 3.45792 3.47317 3.63894 3.84039 4.07216 4.23888 4.54820 4.61170 4.63887 4.87293 4.96292 5.02742 5.13643 5.18497 5.19668 5.24749 5.31502 5.34697 5.40237 5.41475 5.46755 5.51161 5.55126 5.57978 5.62867 5.65631 5.67336 5.83376 5.84873 5.97650 6.09247 6.09571 6.13204 6.27569 6.31848 6.35775 6.42715 6.50479 6.63390 6.78600 6.92522 6.96016 7.00990 7.32778 7.46167 7.66099 7.99447 8.37634 9.49357 10.06116 10.41271 11.41866 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011785 B = 0.003058 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.396746 B = 9153.189121 C =10383.597441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.104 4.104 4 H 0.071 0.929 5 C 0.119 3.881 6 N -0.589 5.589 7 C 0.584 3.416 8 O -0.529 6.529 9 C 0.048 3.952 10 N -0.406 5.406 11 C 0.072 3.928 12 C -0.101 4.101 13 C 0.096 3.904 14 C -0.105 4.105 15 N -0.435 5.435 16 C 0.118 3.882 17 C -0.105 4.105 18 C 0.114 3.886 19 C -0.151 4.151 20 C 0.184 3.816 21 H 0.049 0.951 22 N -0.719 5.719 23 C -0.239 4.239 24 H 0.069 0.931 25 C -0.011 4.011 26 N -0.931 5.931 27 Si 0.904 3.096 28 H -0.290 1.290 29 H -0.292 1.292 30 H -0.283 1.283 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.057 0.943 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.080 0.920 47 H 0.064 0.936 48 H 0.071 0.929 49 H 0.060 0.940 50 H 0.077 0.923 51 H 0.384 0.616 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.060 17.115 13.446 22.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.124 4.124 4 H 0.090 0.910 5 C -0.003 4.003 6 N -0.321 5.321 7 C 0.369 3.631 8 O -0.405 6.405 9 C -0.094 4.094 10 N -0.122 5.122 11 C -0.071 4.071 12 C -0.159 4.159 13 C -0.046 4.046 14 C -0.162 4.162 15 N -0.150 5.150 16 C -0.022 4.022 17 C -0.162 4.162 18 C -0.009 4.009 19 C -0.192 4.192 20 C 0.074 3.926 21 H 0.067 0.933 22 N -0.359 5.359 23 C -0.370 4.370 24 H 0.087 0.913 25 C -0.208 4.208 26 N -0.579 5.579 27 Si 0.736 3.264 28 H -0.217 1.217 29 H -0.218 1.218 30 H -0.208 1.208 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.103 0.897 36 H 0.112 0.888 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.100 0.900 43 H 0.103 0.897 44 H 0.108 0.892 45 H 0.106 0.894 46 H 0.099 0.901 47 H 0.082 0.918 48 H 0.090 0.910 49 H 0.079 0.921 50 H 0.096 0.904 51 H 0.218 0.782 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.547 16.920 13.472 22.101 hybrid contribution 0.926 -0.412 -0.433 1.102 sum -3.621 16.507 13.040 21.346 Atomic orbital electron populations 1.21849 0.96748 1.01099 1.01341 1.21448 0.94413 0.95514 1.03571 1.21793 0.97656 0.96416 0.96583 0.91024 1.21870 0.99550 0.80653 0.98249 1.48063 1.08631 1.06368 1.68994 1.17600 0.86219 0.82579 0.76745 1.90794 1.13185 1.85194 1.51336 1.21852 0.98751 0.96990 0.91853 1.68263 1.04476 1.17792 1.21645 1.22142 0.97277 0.89942 0.97729 1.20771 1.00190 1.02450 0.92484 1.22350 0.94780 0.97889 0.89628 1.20817 1.00875 0.90999 1.03535 1.68209 1.06924 1.17124 1.22785 1.22195 0.94387 0.89064 0.96514 1.20779 1.00428 1.02911 0.92132 1.21810 0.79064 1.00513 0.99539 1.22712 1.02337 0.99391 0.94789 1.20176 0.90754 0.90350 0.91363 0.93300 1.42396 1.16511 1.64351 1.12675 1.19206 0.91805 1.27388 0.98622 0.91260 1.24722 0.98123 1.01487 0.96420 1.69658 1.35258 1.48257 1.04734 0.86235 0.84053 0.79353 0.76800 1.21745 1.21841 1.20830 0.93129 0.92934 0.93202 0.92386 0.89696 0.88815 0.91125 0.89668 0.89811 0.90038 0.89510 0.89966 0.89702 0.89232 0.89393 0.90107 0.91758 0.91035 0.92138 0.90445 0.78153 0.93510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.67 37.16 0.36 -1.71 16 2 C -0.11 -1.76 5.31 -26.73 -0.14 -1.90 16 3 C -0.10 -1.67 1.93 -90.50 -0.17 -1.84 16 4 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 5 C 0.12 1.73 5.33 -3.71 -0.02 1.71 16 6 N -0.59 -8.78 2.97 -173.77 -0.52 -9.30 16 7 C 0.58 9.30 5.72 -12.20 -0.07 9.23 16 8 O -0.53 -9.63 16.52 5.35 0.09 -9.54 16 9 C 0.05 0.70 4.48 -82.85 -0.37 0.33 16 10 N -0.41 -5.58 10.34 -5.88 -0.06 -5.64 16 11 C 0.07 0.78 6.79 -82.42 -0.56 0.22 16 12 C -0.10 -0.68 9.78 36.01 0.35 -0.32 16 13 C 0.10 1.01 6.79 -82.28 -0.56 0.45 16 14 C -0.10 -0.65 9.78 36.01 0.35 -0.30 16 15 N -0.44 -5.55 10.34 -5.23 -0.05 -5.61 16 16 C 0.12 1.62 6.82 -82.04 -0.56 1.06 16 17 C -0.10 -1.26 9.89 36.00 0.36 -0.90 16 18 C 0.11 1.63 6.32 -3.71 -0.02 1.61 16 19 C -0.15 -2.54 5.66 -26.61 -0.15 -2.69 16 20 C 0.18 3.40 2.19 -67.89 -0.15 3.25 16 21 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 22 N -0.72 -16.81 4.33 -53.38 -0.23 -17.04 16 23 C -0.24 -6.29 9.93 -15.06 -0.15 -6.44 16 24 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 25 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 26 N -0.93 -27.23 13.06 55.49 0.72 -26.51 16 27 Si 0.90 21.82 29.55 -169.99 -5.02 16.79 16 28 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 29 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 30 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.62 6.70 -51.93 -0.35 0.27 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.08 1.60 7.22 -51.93 -0.37 1.23 16 36 H 0.09 1.39 5.71 -51.93 -0.30 1.10 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.34 5.95 -51.93 -0.31 0.03 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.08 0.33 5.94 -51.93 -0.31 0.02 16 44 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.08 1.04 6.90 -51.93 -0.36 0.68 16 47 H 0.06 0.90 6.35 -51.93 -0.33 0.57 16 48 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 49 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 50 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 51 H 0.38 9.71 7.51 -40.82 -0.31 9.40 16 52 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 LS Contribution 410.82 15.07 6.19 6.19 Total: -1.00 -31.91 410.82 -9.00 -40.91 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -8.52 Total: 8.39 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -1.60 Total: 1.34 kcal Atomic # 7 Polarization: -63.95 SS G_CDS: -0.14 Total: -64.09 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.09 Total: -9.54 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -31.91 -9.00 -40.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037891884.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.538 kcal (2) G-P(sol) polarization free energy of solvation -31.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds