Wall clock time and date at job start Wed Apr 1 2020 05:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46926 * 2 1 4 4 H 1.09000 * 109.49515 * 54.94294 * 3 2 1 5 5 C 1.53185 * 109.49934 * 294.83927 * 3 2 1 6 6 N 1.46934 * 108.77589 * 185.41274 * 5 3 2 7 7 C 1.34774 * 120.63089 * 233.61336 * 6 5 3 8 8 O 1.21518 * 119.99942 * 354.93226 * 7 6 5 9 9 C 1.48143 * 120.00097 * 174.93083 * 7 6 5 10 10 N 1.33028 * 120.09852 * 284.51405 * 9 7 6 11 11 C 1.31768 * 119.92990 * 180.02562 * 10 9 7 12 12 C 1.50703 * 119.94258 * 179.97438 * 11 10 9 13 13 C 1.38776 * 120.12300 * 0.02562 * 11 10 9 14 14 C 1.50694 * 119.90650 * 179.97438 * 13 11 10 15 15 N 1.32105 * 120.19160 * 359.97438 * 13 11 10 16 16 C 1.32116 * 120.07138 * 359.71231 * 15 13 11 17 17 C 1.50696 * 120.06277 * 180.29847 * 16 15 13 18 18 C 1.46921 * 118.73721 * 53.61210 * 6 5 3 19 19 C 1.53196 * 108.77498 * 306.39134 * 18 6 5 20 20 C 1.53039 * 109.31390 * 54.63726 * 19 18 6 21 21 H 1.09001 * 109.46008 * 58.63812 * 20 19 18 22 22 N 1.46495 * 109.46241 * 178.61623 * 20 19 18 23 23 C 1.36939 * 119.99718 * 274.99470 * 22 20 19 24 24 H 1.08003 * 120.00320 * 0.02562 * 23 22 20 25 25 C 1.38814 * 120.00113 * 179.97438 * 23 22 20 26 26 N 1.31618 * 120.00003 * 0.02562 * 25 23 22 27 27 Si 1.86806 * 120.00267 * 180.02562 * 25 23 22 28 28 H 1.48494 * 109.46746 * 90.00295 * 27 25 23 29 29 H 1.48502 * 109.47168 * 210.00525 * 27 25 23 30 30 H 1.48497 * 109.46905 * 330.00500 * 27 25 23 31 31 H 1.08998 * 109.47589 * 59.99725 * 1 2 3 32 32 H 1.08999 * 109.47122 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47065 * 299.99407 * 1 2 3 34 34 H 1.09008 * 109.47015 * 240.00300 * 2 1 3 35 35 H 1.08999 * 109.47677 * 120.00822 * 2 1 3 36 36 H 1.08997 * 109.59252 * 305.20280 * 5 3 2 37 37 H 1.09002 * 109.58398 * 65.48895 * 5 3 2 38 38 H 1.08997 * 109.46901 * 89.99442 * 12 11 10 39 39 H 1.08998 * 109.47185 * 209.99975 * 12 11 10 40 40 H 1.08996 * 109.46750 * 329.99982 * 12 11 10 41 41 H 1.08997 * 109.47708 * 89.99924 * 14 13 11 42 42 H 1.09008 * 109.47624 * 209.99807 * 14 13 11 43 43 H 1.09007 * 109.47251 * 329.99757 * 14 13 11 44 44 H 1.09009 * 109.47208 * 275.11367 * 17 16 15 45 45 H 1.09000 * 109.47356 * 35.11520 * 17 16 15 46 46 H 1.08997 * 109.47318 * 155.12108 * 17 16 15 47 47 H 1.09001 * 109.58942 * 186.60629 * 18 6 5 48 48 H 1.09000 * 109.59074 * 66.17495 * 18 6 5 49 49 H 1.09005 * 109.49859 * 174.58320 * 19 18 6 50 50 H 1.09003 * 109.50002 * 294.65101 * 19 18 6 51 51 H 0.96999 * 120.00329 * 94.99889 * 22 20 19 52 52 H 0.96996 * 120.00675 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6047 1.9822 0.8411 5 6 1.6384 2.1268 -1.3104 6 7 2.2450 3.4645 -1.3506 7 6 1.4856 4.5566 -1.5674 8 8 0.3040 4.4339 -1.8233 9 6 2.0913 5.9065 -1.4938 10 7 2.3793 6.4449 -0.3120 11 6 2.9175 7.6461 -0.2503 12 6 3.2435 8.2566 1.0884 13 6 3.1839 8.3506 -1.4160 14 6 3.7989 9.7242 -1.3398 15 7 2.8998 7.8206 -2.5922 16 6 2.3657 6.6142 -2.6631 17 6 2.0479 6.0070 -4.0052 18 6 3.6951 3.5889 -1.1498 19 6 4.0736 2.8882 0.1589 20 6 3.5652 1.4451 0.1257 21 1 4.0006 0.9262 -0.7284 22 7 3.9542 0.7620 1.3619 23 6 5.1918 0.1850 1.4650 24 1 5.8813 0.2339 0.6352 25 6 5.5606 -0.4618 2.6366 26 7 4.7206 -0.5209 3.6481 27 14 7.2491 -1.2483 2.7776 28 1 8.2141 -0.2558 3.3150 29 1 7.1769 -2.4149 3.6936 30 1 7.6986 -1.6994 1.4361 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8900 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 1.9963 1.5378 -2.1549 37 1 0.5530 2.2139 -1.3595 38 1 4.2599 7.9853 1.3736 39 1 3.1617 9.3415 1.0226 40 1 2.5444 7.8843 1.8373 41 1 4.8853 9.6376 -1.3596 42 1 3.4664 10.3190 -2.1905 43 1 3.4901 10.2098 -0.4140 44 1 1.0666 6.3483 -4.3353 45 1 2.8019 6.3133 -4.7303 46 1 2.0451 4.9203 -3.9209 47 1 3.9669 4.6429 -1.0917 48 1 4.2208 3.1191 -1.9811 49 1 5.1578 2.8894 0.2719 50 1 3.6197 3.4151 0.9982 51 1 3.3351 0.7184 2.1074 52 1 4.9781 -0.9732 4.4667 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037891887.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:29 Heat of formation + Delta-G solvation = 10.525805 kcal Electronic energy + Delta-G solvation = -31704.767944 eV Core-core repulsion = 27704.096259 eV Total energy + Delta-G solvation = -4000.671685 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.75405 -39.93233 -37.85160 -35.26358 -34.91282 -34.47894 -33.74317 -31.74775 -30.61217 -29.58314 -29.51658 -28.53682 -26.60057 -25.02745 -23.94390 -23.68888 -22.91562 -22.12224 -20.85116 -20.10267 -19.30435 -18.37060 -17.46543 -17.08720 -16.44388 -15.63160 -15.50042 -15.03422 -14.84134 -14.51612 -14.05130 -13.92455 -13.85355 -13.67943 -13.48194 -13.34282 -13.32387 -13.17129 -13.09310 -12.92378 -12.67931 -12.56779 -12.44647 -12.16233 -12.03140 -11.86509 -11.76973 -11.64214 -11.31068 -11.06462 -10.94190 -10.86721 -10.70607 -10.43111 -10.23354 -10.21967 -10.15531 -9.74175 -9.61913 -9.27411 -9.08177 -8.90727 -8.57373 -6.97824 -5.78745 -3.07515 0.32379 0.82780 2.31551 2.84639 3.25811 3.40915 3.46403 3.48030 3.62680 3.85900 4.08359 4.24607 4.55846 4.62792 4.64231 4.87335 4.98675 5.04860 5.14516 5.19635 5.20996 5.29440 5.33363 5.33795 5.34637 5.41917 5.46313 5.52874 5.54942 5.59213 5.64732 5.65491 5.67015 5.78237 5.85390 5.99115 6.09777 6.10574 6.14471 6.31170 6.34472 6.37081 6.44060 6.52770 6.66981 6.81008 6.94299 6.98106 7.05216 7.33133 7.47510 7.67145 7.99330 8.39274 9.50852 10.08139 10.43256 11.43616 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011210 B = 0.003181 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.163435 B = 8800.293779 C =10310.663258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.105 4.105 4 H 0.072 0.928 5 C 0.120 3.880 6 N -0.589 5.589 7 C 0.584 3.416 8 O -0.530 6.530 9 C 0.049 3.951 10 N -0.401 5.401 11 C 0.077 3.923 12 C -0.104 4.104 13 C 0.094 3.906 14 C -0.104 4.104 15 N -0.436 5.436 16 C 0.111 3.889 17 C -0.102 4.102 18 C 0.112 3.888 19 C -0.149 4.149 20 C 0.184 3.816 21 H 0.048 0.952 22 N -0.719 5.719 23 C -0.238 4.238 24 H 0.069 0.931 25 C -0.012 4.012 26 N -0.931 5.931 27 Si 0.904 3.096 28 H -0.291 1.291 29 H -0.292 1.292 30 H -0.282 1.282 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.085 0.915 46 H 0.077 0.923 47 H 0.066 0.934 48 H 0.070 0.930 49 H 0.075 0.925 50 H 0.063 0.937 51 H 0.384 0.616 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.184 17.223 -12.295 21.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.125 4.125 4 H 0.090 0.910 5 C -0.002 4.002 6 N -0.320 5.320 7 C 0.368 3.632 8 O -0.405 6.405 9 C -0.093 4.093 10 N -0.117 5.117 11 C -0.066 4.066 12 C -0.161 4.161 13 C -0.048 4.048 14 C -0.162 4.162 15 N -0.151 5.151 16 C -0.029 4.029 17 C -0.159 4.159 18 C -0.011 4.011 19 C -0.190 4.190 20 C 0.074 3.926 21 H 0.066 0.934 22 N -0.359 5.359 23 C -0.370 4.370 24 H 0.087 0.913 25 C -0.208 4.208 26 N -0.579 5.579 27 Si 0.735 3.265 28 H -0.218 1.218 29 H -0.218 1.218 30 H -0.208 1.208 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.100 0.900 43 H 0.104 0.896 44 H 0.107 0.893 45 H 0.104 0.896 46 H 0.096 0.904 47 H 0.084 0.916 48 H 0.088 0.912 49 H 0.093 0.907 50 H 0.082 0.918 51 H 0.219 0.781 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.660 17.000 -12.451 21.581 hybrid contribution 0.906 -0.382 0.555 1.129 sum -3.754 16.619 -11.895 20.779 Atomic orbital electron populations 1.21849 0.96782 1.01082 1.01334 1.21449 0.94387 0.95518 1.03557 1.21794 0.97759 0.96336 0.96590 0.91001 1.21852 0.99475 0.80660 0.98239 1.48071 1.08748 1.06452 1.68774 1.17620 0.85741 0.82844 0.76971 1.90791 1.14972 1.85915 1.48872 1.21865 0.99898 0.97239 0.90311 1.68320 1.06994 1.10398 1.25970 1.22192 0.96132 0.90893 0.97375 1.20799 1.03523 1.00328 0.91464 1.22339 0.95641 0.98050 0.88753 1.20814 1.01098 0.90236 1.04044 1.68182 1.09878 1.09989 1.27077 1.22153 0.93797 0.90552 0.96409 1.20737 1.03417 1.00539 0.91257 1.21835 0.78974 1.00693 0.99645 1.22667 1.02140 0.99204 0.94982 1.20177 0.90733 0.90411 0.91281 0.93388 1.42397 1.16509 1.64353 1.12678 1.19205 0.91808 1.27348 0.98595 0.91277 1.24720 0.98080 1.01542 0.96428 1.69655 1.35168 1.48376 1.04719 0.86238 0.84180 0.78758 0.77288 1.21819 1.21827 1.20802 0.93219 0.93119 0.92954 0.92393 0.89685 0.91182 0.88916 0.89482 0.89821 0.89847 0.89539 0.90032 0.89638 0.89291 0.89598 0.90378 0.91598 0.91186 0.90661 0.91798 0.78150 0.93518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.67 37.16 0.36 -1.75 16 2 C -0.11 -1.78 5.31 -26.73 -0.14 -1.92 16 3 C -0.10 -1.72 1.92 -90.50 -0.17 -1.90 16 4 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 5 C 0.12 1.74 5.31 -3.71 -0.02 1.72 16 6 N -0.59 -8.77 2.97 -173.77 -0.52 -9.29 16 7 C 0.58 9.29 5.72 -12.19 -0.07 9.22 16 8 O -0.53 -9.61 16.54 5.35 0.09 -9.52 16 9 C 0.05 0.73 4.59 -82.85 -0.38 0.35 16 10 N -0.40 -5.88 10.09 -5.88 -0.06 -5.94 16 11 C 0.08 0.89 6.79 -82.42 -0.56 0.34 16 12 C -0.10 -0.84 9.78 36.01 0.35 -0.48 16 13 C 0.09 1.00 6.79 -82.28 -0.56 0.44 16 14 C -0.10 -0.66 9.78 36.00 0.35 -0.31 16 15 N -0.44 -5.34 10.34 -5.24 -0.05 -5.40 16 16 C 0.11 1.43 6.82 -82.04 -0.56 0.87 16 17 C -0.10 -1.05 9.89 36.00 0.36 -0.69 16 18 C 0.11 1.60 6.35 -3.71 -0.02 1.58 16 19 C -0.15 -2.57 5.66 -26.61 -0.15 -2.73 16 20 C 0.18 3.46 2.19 -67.89 -0.15 3.31 16 21 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 22 N -0.72 -17.08 4.33 -53.38 -0.23 -17.31 16 23 C -0.24 -6.32 9.93 -15.06 -0.15 -6.47 16 24 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 25 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 26 N -0.93 -27.45 13.06 55.49 0.72 -26.73 16 27 Si 0.90 21.90 29.55 -169.99 -5.02 16.87 16 28 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 29 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 30 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 31 H 0.05 0.63 6.70 -51.93 -0.35 0.28 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 35 H 0.08 1.63 7.22 -51.93 -0.37 1.26 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.09 1.39 5.76 -51.93 -0.30 1.09 16 38 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.43 5.94 -51.93 -0.31 0.12 16 40 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.50 8.14 -51.92 -0.42 0.07 16 43 H 0.09 0.36 5.94 -51.92 -0.31 0.06 16 44 H 0.09 0.86 8.14 -51.92 -0.42 0.44 16 45 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.08 0.82 6.90 -51.93 -0.36 0.46 16 47 H 0.07 0.93 6.11 -51.93 -0.32 0.61 16 48 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 49 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 50 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 51 H 0.38 9.90 7.51 -40.82 -0.31 9.60 16 52 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 410.53 15.07 6.19 6.19 Total: -1.00 -32.33 410.53 -9.00 -41.33 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -8.51 Total: 8.63 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -1.61 Total: 1.16 kcal Atomic # 7 Polarization: -64.53 SS G_CDS: -0.14 Total: -64.66 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.09 Total: -9.52 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.33 -9.00 -41.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037891887.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.858 kcal (2) G-P(sol) polarization free energy of solvation -32.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds