Wall clock time and date at job start Wed Apr 1 2020 05:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47033 * 2 1 4 4 H 1.08995 * 109.52235 * 305.07859 * 3 2 1 5 5 C 1.53196 * 109.49692 * 65.16483 * 3 2 1 6 6 N 1.46918 * 108.77335 * 174.58484 * 5 3 2 7 7 C 1.34776 * 120.63257 * 126.41053 * 6 5 3 8 8 O 1.21522 * 119.99782 * 354.93319 * 7 6 5 9 9 C 1.48147 * 120.00380 * 174.93416 * 7 6 5 10 10 N 1.33036 * 120.08878 * 284.08803 * 9 7 6 11 11 C 1.31781 * 119.92275 * 179.79007 * 10 9 7 12 12 C 1.50691 * 119.93944 * 180.23424 * 11 10 9 13 13 C 1.38773 * 120.11917 * 0.46506 * 11 10 9 14 14 C 1.50702 * 119.90110 * 179.76529 * 13 11 10 15 15 N 1.32107 * 120.19663 * 359.78964 * 13 11 10 16 16 C 1.32109 * 120.07143 * 359.97438 * 15 13 11 17 17 C 1.50700 * 120.06232 * 180.02562 * 16 15 13 18 18 C 1.46927 * 118.74279 * 306.38885 * 6 5 3 19 19 C 1.53167 * 108.76522 * 53.61092 * 18 6 5 20 20 C 1.53042 * 109.32735 * 305.35462 * 19 18 6 21 21 H 1.08996 * 109.46030 * 181.38800 * 20 19 18 22 22 N 1.46498 * 109.46130 * 301.36183 * 20 19 18 23 23 C 1.36932 * 120.00226 * 275.02154 * 22 20 19 24 24 H 1.08001 * 119.99763 * 0.02562 * 23 22 20 25 25 C 1.38812 * 120.00217 * 179.97438 * 23 22 20 26 26 N 1.31615 * 119.99784 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 119.99813 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47265 * 180.02562 * 27 25 23 29 29 H 1.48501 * 109.47462 * 300.00325 * 27 25 23 30 30 H 1.48500 * 109.47099 * 60.00830 * 27 25 23 31 31 H 1.09003 * 109.47175 * 59.99420 * 1 2 3 32 32 H 1.08993 * 109.47370 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.47341 * 299.99979 * 1 2 3 34 34 H 1.08999 * 109.47001 * 240.00011 * 2 1 3 35 35 H 1.09002 * 109.46925 * 119.99838 * 2 1 3 36 36 H 1.08997 * 109.58201 * 294.36815 * 5 3 2 37 37 H 1.08993 * 109.58541 * 54.65558 * 5 3 2 38 38 H 1.09008 * 109.47124 * 270.23108 * 12 11 10 39 39 H 1.09002 * 109.47538 * 30.23176 * 12 11 10 40 40 H 1.09001 * 109.47235 * 150.23377 * 12 11 10 41 41 H 1.08997 * 109.47345 * 270.02402 * 14 13 11 42 42 H 1.09001 * 109.47404 * 30.02276 * 14 13 11 43 43 H 1.08999 * 109.47179 * 150.02449 * 14 13 11 44 44 H 1.09004 * 109.46858 * 274.80028 * 17 16 15 45 45 H 1.08994 * 109.47038 * 34.80519 * 17 16 15 46 46 H 1.08997 * 109.47004 * 154.80882 * 17 16 15 47 47 H 1.08998 * 109.58883 * 173.39474 * 18 6 5 48 48 H 1.09000 * 109.58541 * 293.68317 * 18 6 5 49 49 H 1.09005 * 109.47915 * 185.41427 * 19 18 6 50 50 H 1.08995 * 109.50683 * 65.31921 * 19 18 6 51 51 H 0.97003 * 119.99944 * 95.02755 * 22 20 19 52 52 H 0.97002 * 119.99477 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6048 1.9828 -0.8407 5 6 1.6385 2.1268 1.3106 6 7 2.2451 3.4643 1.3507 7 6 1.4859 4.5564 1.5682 8 8 0.2774 4.4515 1.6415 9 6 2.1244 5.8848 1.7178 10 7 2.7449 6.2028 2.8508 11 6 3.3154 7.3838 2.9788 12 6 4.0228 7.7423 4.2601 13 6 3.2617 8.2996 1.9376 14 6 3.9112 9.6508 2.0913 15 7 2.6424 7.9908 0.8123 16 6 2.0719 6.8073 0.6740 17 6 1.3661 6.4549 -0.6101 18 6 3.6952 3.5888 1.1499 19 6 4.0734 2.8883 -0.1587 20 6 3.5652 1.4450 -0.1257 21 1 3.8546 0.9371 -1.0457 22 7 4.1507 0.7475 1.0218 23 6 5.3882 0.1713 0.9143 24 1 5.9328 0.2313 -0.0164 25 6 5.9432 -0.4892 2.0018 26 7 5.2797 -0.5620 3.1361 27 14 7.6317 -1.2747 1.8552 28 1 7.9946 -1.9127 3.1461 29 1 7.6078 -2.3035 0.7846 30 1 8.6347 -0.2328 1.5183 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 0.5533 2.2162 1.3585 37 1 1.9943 1.5364 2.1549 38 1 3.3162 8.2075 4.9475 39 1 4.4312 6.8397 4.7147 40 1 4.8329 8.4393 4.0452 41 1 3.1907 10.3551 2.5071 42 1 4.7670 9.5685 2.7614 43 1 4.2457 10.0061 1.1167 44 1 0.3413 6.8247 -0.5746 45 1 1.8889 6.9130 -1.4496 46 1 1.3574 5.3721 -0.7346 47 1 3.9670 4.6428 1.0919 48 1 4.2209 3.1211 1.9824 49 1 5.1576 2.8897 -0.2716 50 1 3.6190 3.4148 -0.9979 51 1 3.6617 0.6938 1.8578 52 1 5.6674 -1.0238 3.8959 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037891889.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:34 Heat of formation + Delta-G solvation = 11.956639 kcal Electronic energy + Delta-G solvation = -32158.045638 eV Core-core repulsion = 28157.435999 eV Total energy + Delta-G solvation = -4000.609639 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.65068 -39.86886 -37.85460 -35.17087 -34.73404 -34.22482 -33.74578 -31.72783 -30.52619 -29.56385 -29.31646 -28.41394 -26.56579 -24.94946 -23.86968 -23.63805 -23.39982 -22.18614 -20.83627 -19.99552 -18.46469 -18.32560 -17.41815 -17.08591 -16.28713 -15.56915 -15.41353 -15.00126 -14.61995 -14.47159 -14.06767 -14.01480 -13.77591 -13.66209 -13.37742 -13.29972 -13.29000 -13.22659 -12.94831 -12.84200 -12.58763 -12.46293 -12.38644 -12.25146 -11.97254 -11.78731 -11.68557 -11.44198 -11.12885 -11.02200 -10.93703 -10.82328 -10.73554 -10.35978 -10.30287 -10.21798 -10.06975 -9.80946 -9.57200 -9.17888 -8.99296 -8.92091 -8.31546 -6.99502 -5.79908 -3.08685 0.42221 0.91801 2.48172 2.99227 3.36088 3.40858 3.46145 3.46918 3.72194 3.98304 4.17579 4.35681 4.56167 4.72437 4.73385 4.95696 5.08205 5.11804 5.20372 5.24114 5.31061 5.35132 5.40662 5.42974 5.45413 5.52037 5.54150 5.57522 5.59986 5.67819 5.71754 5.77345 5.78540 5.87198 5.89095 6.06771 6.13201 6.16233 6.18935 6.32790 6.34812 6.39532 6.53879 6.58054 6.68692 6.73313 6.90745 6.96589 7.07213 7.53679 7.57190 7.66834 8.16152 8.38239 9.49941 10.06115 10.41233 11.42254 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010316 B = 0.003671 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2713.703867 B = 7624.604689 C = 9306.583580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.109 4.109 3 C -0.103 4.103 4 H 0.068 0.932 5 C 0.118 3.882 6 N -0.583 5.583 7 C 0.581 3.419 8 O -0.535 6.535 9 C 0.053 3.947 10 N -0.403 5.403 11 C 0.076 3.924 12 C -0.103 4.103 13 C 0.092 3.908 14 C -0.103 4.103 15 N -0.436 5.436 16 C 0.112 3.888 17 C -0.102 4.102 18 C 0.122 3.878 19 C -0.150 4.150 20 C 0.179 3.821 21 H 0.053 0.947 22 N -0.718 5.718 23 C -0.240 4.240 24 H 0.069 0.931 25 C -0.009 4.009 26 N -0.931 5.931 27 Si 0.904 3.096 28 H -0.292 1.292 29 H -0.287 1.287 30 H -0.287 1.287 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.088 0.912 45 H 0.085 0.915 46 H 0.079 0.921 47 H 0.057 0.943 48 H 0.089 0.911 49 H 0.075 0.925 50 H 0.048 0.952 51 H 0.384 0.616 52 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.428 16.986 -4.219 18.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.123 4.123 4 H 0.086 0.914 5 C -0.003 4.003 6 N -0.314 5.314 7 C 0.365 3.635 8 O -0.411 6.411 9 C -0.089 4.089 10 N -0.119 5.119 11 C -0.067 4.067 12 C -0.161 4.161 13 C -0.050 4.050 14 C -0.161 4.161 15 N -0.151 5.151 16 C -0.028 4.028 17 C -0.159 4.159 18 C -0.001 4.001 19 C -0.191 4.191 20 C 0.069 3.931 21 H 0.071 0.929 22 N -0.360 5.360 23 C -0.371 4.371 24 H 0.087 0.913 25 C -0.206 4.206 26 N -0.579 5.579 27 Si 0.735 3.265 28 H -0.218 1.218 29 H -0.214 1.214 30 H -0.214 1.214 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.100 0.900 44 H 0.106 0.894 45 H 0.104 0.896 46 H 0.097 0.903 47 H 0.075 0.925 48 H 0.107 0.893 49 H 0.094 0.906 50 H 0.067 0.933 51 H 0.219 0.781 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.919 16.787 -4.214 18.292 hybrid contribution 0.983 -0.436 0.324 1.123 sum -4.935 16.351 -3.890 17.517 Atomic orbital electron populations 1.21858 0.96767 1.01087 1.01382 1.21414 0.94297 0.95571 1.03474 1.21765 0.97410 0.96278 0.96848 0.91404 1.21796 0.98903 0.80892 0.98746 1.48027 1.08861 1.06156 1.68330 1.17606 0.86213 0.82631 0.77027 1.90777 1.13238 1.85269 1.51857 1.21893 0.98419 0.96969 0.91654 1.68315 1.04293 1.17676 1.21598 1.22172 0.96998 0.89848 0.97709 1.20786 0.99693 1.03336 0.92236 1.22320 0.95160 0.97835 0.89679 1.20800 1.00401 0.90840 1.04062 1.68173 1.06963 1.17083 1.22924 1.22142 0.94845 0.89218 0.96586 1.20736 1.00315 1.02711 0.92172 1.21652 0.78799 0.99359 1.00241 1.22551 1.01944 0.99442 0.95157 1.20220 0.89715 0.90439 0.92772 0.92926 1.42466 1.19119 1.63907 1.10552 1.19160 0.93663 1.27206 0.97076 0.91328 1.24692 0.98482 1.01401 0.95990 1.69638 1.38148 1.47886 1.02218 0.86327 0.84401 0.79184 0.76583 1.21791 1.21355 1.21409 0.93326 0.93128 0.92778 0.91923 0.90428 0.89284 0.90231 0.89859 0.89710 0.89768 0.89747 0.89636 0.90020 0.89373 0.89649 0.90251 0.92504 0.89298 0.90638 0.93281 0.78066 0.93461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.67 37.16 0.36 -1.68 16 2 C -0.11 -1.71 5.19 -26.73 -0.14 -1.85 16 3 C -0.10 -1.64 2.14 -90.49 -0.19 -1.83 16 4 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 5 C 0.12 2.00 5.04 -3.71 -0.02 1.98 16 6 N -0.58 -9.93 2.97 -173.79 -0.52 -10.45 16 7 C 0.58 10.18 5.72 -12.19 -0.07 10.11 16 8 O -0.53 -10.44 16.52 5.35 0.09 -10.35 16 9 C 0.05 0.86 4.48 -82.84 -0.37 0.49 16 10 N -0.40 -6.38 10.35 -5.88 -0.06 -6.44 16 11 C 0.08 0.95 6.79 -82.42 -0.56 0.39 16 12 C -0.10 -0.89 9.78 36.00 0.35 -0.54 16 13 C 0.09 1.06 6.79 -82.27 -0.56 0.51 16 14 C -0.10 -0.73 9.78 36.01 0.35 -0.38 16 15 N -0.44 -5.81 10.34 -5.24 -0.05 -5.87 16 16 C 0.11 1.60 6.82 -82.04 -0.56 1.04 16 17 C -0.10 -1.19 9.89 36.01 0.36 -0.83 16 18 C 0.12 2.09 6.06 -3.72 -0.02 2.07 16 19 C -0.15 -2.50 5.78 -26.62 -0.15 -2.65 16 20 C 0.18 3.27 2.53 -67.89 -0.17 3.10 16 21 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 22 N -0.72 -16.30 3.73 -53.39 -0.20 -16.50 16 23 C -0.24 -6.20 9.93 -15.06 -0.15 -6.35 16 24 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 25 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 26 N -0.93 -26.88 13.06 55.49 0.72 -26.15 16 27 Si 0.90 21.67 29.55 -169.99 -5.02 16.65 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 29 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 30 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.72 6.70 -51.93 -0.35 0.38 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.08 1.41 7.70 -51.93 -0.40 1.01 16 36 H 0.09 1.49 5.72 -51.93 -0.30 1.19 16 37 H 0.08 1.50 6.64 -51.93 -0.35 1.16 16 38 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 39 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.08 0.49 5.95 -51.93 -0.31 0.18 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.09 0.43 5.95 -51.93 -0.31 0.12 16 43 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 45 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 46 H 0.08 0.97 6.90 -51.93 -0.36 0.62 16 47 H 0.06 0.93 6.36 -51.93 -0.33 0.60 16 48 H 0.09 1.79 7.74 -51.93 -0.40 1.39 16 49 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 50 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 51 H 0.38 9.40 5.95 -40.82 -0.24 9.16 16 52 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 407.25 15.07 6.14 6.14 Total: -1.00 -31.32 407.25 -8.93 -40.25 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -8.38 Total: 9.51 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: -1.64 Total: 3.22 kcal Atomic # 7 Polarization: -65.30 SS G_CDS: -0.11 Total: -65.41 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.09 Total: -10.35 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -31.32 -8.93 -40.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037891889.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.205 kcal (2) G-P(sol) polarization free energy of solvation -31.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds