Wall clock time and date at job start Wed Apr 1 2020 05:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47059 * 2 1 4 4 H 1.08994 * 109.49644 * 304.93449 * 3 2 1 5 5 C 1.53192 * 109.49711 * 65.00143 * 3 2 1 6 6 N 1.46920 * 108.77618 * 174.58582 * 5 3 2 7 7 C 1.34784 * 120.63259 * 126.36674 * 6 5 3 8 8 O 1.21681 * 119.99851 * 358.95219 * 7 6 5 9 9 C 1.46758 * 120.00052 * 178.95323 * 7 6 5 10 10 C 1.36837 * 126.91412 * 331.91481 * 9 7 6 11 11 N 1.33449 * 107.83747 * 180.02562 * 10 9 7 12 12 C 1.30552 * 109.68466 * 359.97438 * 11 10 9 13 13 N 1.34877 * 108.99094 * 0.05745 * 12 11 10 14 14 C 1.46438 * 124.99734 * 179.91214 * 13 12 11 15 15 C 1.53274 * 108.81279 * 342.93500 * 14 13 12 16 16 C 1.53158 * 109.43628 * 50.24457 * 15 14 13 17 17 C 1.51117 * 127.09598 * 180.08899 * 12 11 10 18 18 C 1.46928 * 118.73743 * 306.64283 * 6 5 3 19 19 C 1.52759 * 109.00882 * 53.30892 * 18 6 5 20 20 C 1.53039 * 109.38192 * 305.58769 * 19 18 6 21 21 H 1.08993 * 109.46012 * 301.21995 * 20 19 18 22 22 N 1.46498 * 109.45852 * 181.26261 * 20 19 18 23 23 C 1.36935 * 120.00550 * 84.93269 * 22 20 19 24 24 H 1.08006 * 119.99443 * 359.97438 * 23 22 20 25 25 C 1.38810 * 120.00380 * 179.97438 * 23 22 20 26 26 N 1.31618 * 119.99921 * 179.97438 * 25 23 22 27 27 Si 1.86804 * 120.00099 * 0.02562 * 25 23 22 28 28 H 1.48497 * 109.47129 * 89.99606 * 27 25 23 29 29 H 1.48496 * 109.46929 * 209.99792 * 27 25 23 30 30 H 1.48494 * 109.46631 * 329.99992 * 27 25 23 31 31 H 1.09003 * 109.47285 * 299.99865 * 1 2 3 32 32 H 1.08999 * 109.47154 * 59.99877 * 1 2 3 33 33 H 1.08998 * 109.47460 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.47285 * 240.00135 * 2 1 3 35 35 H 1.08999 * 109.47154 * 120.00123 * 2 1 3 36 36 H 1.09000 * 109.58935 * 54.79820 * 5 3 2 37 37 H 1.09000 * 109.58374 * 294.37277 * 5 3 2 38 38 H 1.08001 * 126.08016 * 359.97438 * 10 9 7 39 39 H 1.08995 * 109.58361 * 223.13872 * 14 13 12 40 40 H 1.09004 * 109.69257 * 102.79501 * 14 13 12 41 41 H 1.09002 * 109.47636 * 290.25379 * 15 14 13 42 42 H 1.09007 * 109.47591 * 170.23117 * 15 14 13 43 43 H 1.09000 * 109.51445 * 50.58123 * 16 15 14 44 44 H 1.09003 * 109.50807 * 170.73956 * 16 15 14 45 45 H 1.09005 * 109.70617 * 44.27057 * 17 12 11 46 46 H 1.08999 * 109.70869 * 283.65147 * 17 12 11 47 47 H 1.09000 * 109.58346 * 173.14614 * 18 6 5 48 48 H 1.09003 * 109.58556 * 293.56752 * 18 6 5 49 49 H 1.08998 * 109.56480 * 185.55231 * 19 18 6 50 50 H 1.08995 * 109.38643 * 65.51508 * 19 18 6 51 51 H 0.97006 * 119.99775 * 264.93676 * 22 20 19 52 52 H 0.97004 * 120.00131 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9816 -0.8423 5 6 1.6350 2.1280 1.3088 6 7 2.2415 3.4656 1.3494 7 6 1.4814 4.5580 1.5629 8 8 0.2784 4.4438 1.7053 9 6 2.1048 5.8852 1.6236 10 6 3.3844 6.1752 2.0122 11 7 3.5490 7.4965 1.9235 12 6 2.4447 8.0499 1.5009 13 7 1.5200 7.0883 1.3022 14 6 0.1535 7.3218 0.8303 15 6 -0.1847 8.8059 1.0100 16 6 0.9319 9.6602 0.4026 17 6 2.1969 9.5208 1.2586 18 6 3.6913 3.5903 1.1467 19 6 4.0740 2.8879 -0.1548 20 6 3.5655 1.4449 -0.1216 21 1 3.9988 0.9268 0.7338 22 7 3.9578 0.7608 -1.3562 23 6 5.1961 0.1849 -1.4562 24 1 5.8838 0.2355 -0.6249 25 6 5.5676 -0.4638 -2.6259 26 7 6.7581 -1.0168 -2.7221 27 14 4.3784 -0.5506 -4.0639 28 1 4.5815 0.6266 -4.9459 29 1 4.6245 -1.7954 -4.8352 30 1 2.9839 -0.5520 -3.5535 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.9907 1.5397 2.1547 37 1 0.5496 2.2173 1.3538 38 1 4.1285 5.4617 2.3342 39 1 -0.5420 6.7158 1.4108 40 1 0.0784 7.0551 -0.2240 41 1 -0.2777 9.0313 2.0724 42 1 -1.1262 9.0275 0.5074 43 1 1.1396 9.3202 -0.6120 44 1 0.6204 10.7046 0.3809 45 1 3.0469 9.9548 0.7318 46 1 2.0545 10.0313 2.2110 47 1 3.9622 4.6443 1.0849 48 1 4.2181 3.1237 1.9791 49 1 5.1584 2.8891 -0.2649 50 1 3.6223 3.4136 -0.9960 51 1 3.3403 0.7157 -2.1030 52 1 7.0178 -1.4698 -3.5396 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037909406.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:58:39 Heat of formation + Delta-G solvation = 38.596371 kcal Electronic energy + Delta-G solvation = -31794.409099 eV Core-core repulsion = 27794.954645 eV Total energy + Delta-G solvation = -3999.454454 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.70845 -40.02869 -37.85718 -37.03489 -34.94518 -33.94892 -33.46017 -31.81744 -30.56911 -29.95948 -29.66178 -28.29502 -25.60575 -24.75931 -23.92830 -23.24587 -22.47143 -21.74757 -20.86293 -20.37207 -19.63662 -19.00293 -17.65807 -17.20626 -16.55805 -16.38801 -15.91089 -15.16880 -14.97685 -14.85243 -14.65703 -14.54790 -14.37079 -14.02297 -13.96321 -13.76898 -13.43265 -13.33821 -13.16124 -12.88337 -12.72213 -12.40673 -12.27913 -11.88685 -11.76000 -11.64698 -11.58223 -11.47400 -11.44535 -11.04377 -10.96796 -10.79567 -10.51578 -10.39507 -10.33002 -10.22893 -9.91108 -9.80856 -9.76323 -9.59467 -8.94570 -8.70758 -8.45583 -7.28840 -5.79531 -3.14935 1.22239 2.20463 2.65393 3.04616 3.19390 3.34736 3.38070 3.43477 3.90999 4.10664 4.17502 4.26454 4.43395 4.56518 4.76286 4.87424 4.94287 4.97600 5.00975 5.10197 5.11260 5.15874 5.23774 5.24668 5.31172 5.34770 5.38490 5.45499 5.48100 5.51267 5.56032 5.61338 5.66062 5.73561 5.90102 5.95393 5.98536 6.02213 6.09357 6.21669 6.26003 6.30727 6.34598 6.43895 6.52697 6.69104 6.77924 6.83438 6.93170 7.34735 7.74370 7.96144 8.06574 8.39587 9.17679 9.90502 10.10345 11.38774 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013797 B = 0.002913 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.888885 B = 9609.256601 C =10362.513996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.108 4.108 4 H 0.068 0.932 5 C 0.122 3.878 6 N -0.589 5.589 7 C 0.594 3.406 8 O -0.554 6.554 9 C -0.075 4.075 10 C 0.026 3.974 11 N -0.490 5.490 12 C 0.225 3.775 13 N -0.421 5.421 14 C 0.098 3.902 15 C -0.135 4.135 16 C -0.128 4.128 17 C -0.035 4.035 18 C 0.080 3.920 19 C -0.150 4.150 20 C 0.188 3.812 21 H 0.058 0.942 22 N -0.745 5.745 23 C -0.241 4.241 24 H 0.091 0.909 25 C 0.006 3.994 26 N -0.933 5.933 27 Si 0.881 3.119 28 H -0.285 1.285 29 H -0.292 1.292 30 H -0.277 1.277 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.190 0.810 39 H 0.105 0.895 40 H 0.086 0.914 41 H 0.076 0.924 42 H 0.091 0.909 43 H 0.072 0.928 44 H 0.084 0.916 45 H 0.099 0.901 46 H 0.092 0.908 47 H 0.102 0.898 48 H 0.074 0.926 49 H 0.083 0.917 50 H 0.057 0.943 51 H 0.360 0.640 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.581 19.487 9.424 26.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.128 4.128 4 H 0.087 0.913 5 C 0.000 4.000 6 N -0.320 5.320 7 C 0.382 3.618 8 O -0.433 6.433 9 C -0.192 4.192 10 C -0.128 4.128 11 N -0.208 5.208 12 C -0.037 4.037 13 N -0.102 5.102 14 C -0.024 4.024 15 C -0.173 4.173 16 C -0.166 4.166 17 C -0.074 4.074 18 C -0.043 4.043 19 C -0.191 4.191 20 C 0.078 3.922 21 H 0.076 0.924 22 N -0.387 5.387 23 C -0.371 4.371 24 H 0.109 0.891 25 C -0.190 4.190 26 N -0.581 5.581 27 Si 0.712 3.288 28 H -0.212 1.212 29 H -0.218 1.218 30 H -0.203 1.203 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.110 0.890 38 H 0.207 0.793 39 H 0.123 0.877 40 H 0.104 0.896 41 H 0.095 0.905 42 H 0.110 0.890 43 H 0.091 0.909 44 H 0.103 0.897 45 H 0.117 0.883 46 H 0.111 0.889 47 H 0.119 0.881 48 H 0.092 0.908 49 H 0.102 0.898 50 H 0.075 0.925 51 H 0.193 0.807 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.440 19.724 9.657 26.283 hybrid contribution -1.311 -0.734 -1.443 2.084 sum -15.751 18.989 8.214 26.003 Atomic orbital electron populations 1.21854 0.96661 1.01200 1.01382 1.21466 0.94512 0.95609 1.03538 1.21832 0.97762 0.96292 0.96913 0.91343 1.21783 0.99487 0.80797 0.97901 1.47835 1.08882 1.06121 1.69189 1.16780 0.85705 0.82506 0.76855 1.90765 1.14078 1.86505 1.51990 1.20601 0.95842 0.87233 1.15517 1.23047 0.93860 0.92738 1.03106 1.69965 1.23654 1.07436 1.19777 1.23455 0.84911 0.93337 1.01997 1.45114 1.12213 1.05556 1.47323 1.22152 0.80442 0.98300 1.01458 1.21945 0.99925 0.92508 1.02896 1.21718 0.94080 1.01193 0.99621 1.20286 0.99239 0.86176 1.01677 1.22536 0.78989 1.03310 0.99464 1.22550 1.02763 0.98548 0.95265 1.20178 0.90536 0.90745 0.90731 0.92393 1.42771 1.16515 1.66279 1.13091 1.19050 0.90386 1.27195 1.00485 0.89141 1.24650 0.96394 1.00292 0.97658 1.69694 1.19215 1.41597 1.27593 0.86602 0.81131 0.77305 0.83782 1.21222 1.21799 1.20310 0.92942 0.93153 0.93007 0.90366 0.91834 0.91045 0.88954 0.79304 0.87658 0.89603 0.90490 0.89002 0.90919 0.89694 0.88261 0.88925 0.88081 0.90751 0.89815 0.92458 0.80662 0.93070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.67 37.16 0.36 -1.59 16 2 C -0.11 -1.69 5.31 -26.73 -0.14 -1.83 16 3 C -0.11 -1.64 1.93 -90.50 -0.17 -1.82 16 4 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 5 C 0.12 1.67 5.33 -3.71 -0.02 1.65 16 6 N -0.59 -8.13 2.98 -174.54 -0.52 -8.65 16 7 C 0.59 8.78 7.57 -12.81 -0.10 8.68 16 8 O -0.55 -9.27 15.09 5.21 0.08 -9.19 16 9 C -0.07 -1.02 6.49 -82.35 -0.53 -1.55 16 10 C 0.03 0.33 9.54 -17.36 -0.17 0.17 16 11 N -0.49 -6.60 11.20 -10.35 -0.12 -6.72 16 12 C 0.23 2.57 7.64 -155.32 -1.19 1.38 16 13 N -0.42 -5.02 3.15 -109.76 -0.35 -5.36 16 14 C 0.10 0.90 6.51 -3.93 -0.03 0.88 16 15 C -0.14 -0.77 5.95 -26.51 -0.16 -0.93 16 16 C -0.13 -0.67 5.96 -26.45 -0.16 -0.82 16 17 C -0.03 -0.25 6.33 -27.48 -0.17 -0.42 16 18 C 0.08 1.03 5.35 -3.93 -0.02 1.01 16 19 C -0.15 -2.42 5.64 -26.83 -0.15 -2.57 16 20 C 0.19 3.34 2.20 -67.89 -0.15 3.19 16 21 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 22 N -0.74 -16.59 4.14 -53.39 -0.22 -16.81 16 23 C -0.24 -6.48 10.41 -15.06 -0.16 -6.64 16 24 H 0.09 2.60 8.06 -52.48 -0.42 2.18 16 25 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 26 N -0.93 -28.76 13.97 55.49 0.78 -27.99 16 27 Si 0.88 21.77 27.74 -169.99 -4.71 17.05 16 28 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 29 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 30 H -0.28 -6.41 6.52 56.52 0.37 -6.04 16 31 H 0.05 0.61 6.70 -51.93 -0.35 0.26 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.08 1.37 7.22 -51.93 -0.37 1.00 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.09 1.30 5.72 -51.93 -0.30 1.00 16 38 H 0.19 2.07 6.00 -52.49 -0.32 1.76 16 39 H 0.11 1.09 7.15 -51.93 -0.37 0.72 16 40 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.08 0.44 8.12 -51.93 -0.42 0.02 16 42 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 44 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.10 1.23 3.62 -51.93 -0.19 1.04 16 48 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 49 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 50 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 51 H 0.36 8.09 5.37 -40.82 -0.22 7.87 16 52 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 394.62 15.07 5.95 5.95 Total: -1.00 -33.54 394.62 -10.63 -44.17 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -8.46 Total: 8.68 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -3.05 Total: -1.14 kcal Atomic # 7 Polarization: -65.10 SS G_CDS: -0.43 Total: -65.52 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.08 Total: -9.19 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.71 Total: 17.05 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.54 -10.63 -44.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037909406.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.763 kcal (2) G-P(sol) polarization free energy of solvation -33.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds