Wall clock time and date at job start Wed Apr 1 2020 05:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47059 * 2 1 4 4 H 1.08994 * 109.49644 * 304.93449 * 3 2 1 5 5 C 1.53192 * 109.49711 * 65.00143 * 3 2 1 6 6 N 1.46920 * 108.77618 * 174.58582 * 5 3 2 7 7 C 1.34784 * 120.63259 * 126.36674 * 6 5 3 8 8 O 1.21681 * 119.99851 * 358.95219 * 7 6 5 9 9 C 1.46758 * 120.00052 * 178.95323 * 7 6 5 10 10 C 1.36837 * 126.91412 * 331.91481 * 9 7 6 11 11 N 1.33449 * 107.83747 * 180.02562 * 10 9 7 12 12 C 1.30552 * 109.68466 * 359.97438 * 11 10 9 13 13 N 1.34877 * 108.99094 * 0.05745 * 12 11 10 14 14 C 1.46438 * 124.99734 * 179.91214 * 13 12 11 15 15 C 1.53274 * 108.81279 * 342.93500 * 14 13 12 16 16 C 1.53158 * 109.43628 * 50.24457 * 15 14 13 17 17 C 1.51117 * 127.09598 * 180.08899 * 12 11 10 18 18 C 1.46928 * 118.73743 * 306.64283 * 6 5 3 19 19 C 1.52759 * 109.00882 * 53.30892 * 18 6 5 20 20 C 1.53039 * 109.38192 * 305.58769 * 19 18 6 21 21 H 1.08993 * 109.46012 * 301.21995 * 20 19 18 22 22 N 1.46498 * 109.45852 * 181.26261 * 20 19 18 23 23 C 1.36935 * 120.00550 * 84.93269 * 22 20 19 24 24 H 1.08006 * 119.99443 * 359.97438 * 23 22 20 25 25 C 1.38810 * 120.00380 * 179.97438 * 23 22 20 26 26 N 1.31618 * 119.99921 * 179.97438 * 25 23 22 27 27 Si 1.86804 * 120.00099 * 0.02562 * 25 23 22 28 28 H 1.48497 * 109.47129 * 89.99606 * 27 25 23 29 29 H 1.48496 * 109.46929 * 209.99792 * 27 25 23 30 30 H 1.48494 * 109.46631 * 329.99992 * 27 25 23 31 31 H 1.09003 * 109.47285 * 299.99865 * 1 2 3 32 32 H 1.08999 * 109.47154 * 59.99877 * 1 2 3 33 33 H 1.08998 * 109.47460 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.47285 * 240.00135 * 2 1 3 35 35 H 1.08999 * 109.47154 * 120.00123 * 2 1 3 36 36 H 1.09000 * 109.58935 * 54.79820 * 5 3 2 37 37 H 1.09000 * 109.58374 * 294.37277 * 5 3 2 38 38 H 1.08001 * 126.08016 * 359.97438 * 10 9 7 39 39 H 1.08995 * 109.58361 * 223.13872 * 14 13 12 40 40 H 1.09004 * 109.69257 * 102.79501 * 14 13 12 41 41 H 1.09002 * 109.47636 * 290.25379 * 15 14 13 42 42 H 1.09007 * 109.47591 * 170.23117 * 15 14 13 43 43 H 1.09000 * 109.51445 * 50.58123 * 16 15 14 44 44 H 1.09003 * 109.50807 * 170.73956 * 16 15 14 45 45 H 1.09005 * 109.70617 * 44.27057 * 17 12 11 46 46 H 1.08999 * 109.70869 * 283.65147 * 17 12 11 47 47 H 1.09000 * 109.58346 * 173.14614 * 18 6 5 48 48 H 1.09003 * 109.58556 * 293.56752 * 18 6 5 49 49 H 1.08998 * 109.56480 * 185.55231 * 19 18 6 50 50 H 1.08995 * 109.38643 * 65.51508 * 19 18 6 51 51 H 0.97006 * 119.99775 * 264.93676 * 22 20 19 52 52 H 0.97004 * 120.00131 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9816 -0.8423 5 6 1.6350 2.1280 1.3088 6 7 2.2415 3.4656 1.3494 7 6 1.4814 4.5580 1.5629 8 8 0.2784 4.4438 1.7053 9 6 2.1048 5.8852 1.6236 10 6 3.3844 6.1752 2.0122 11 7 3.5490 7.4965 1.9235 12 6 2.4447 8.0499 1.5009 13 7 1.5200 7.0883 1.3022 14 6 0.1535 7.3218 0.8303 15 6 -0.1847 8.8059 1.0100 16 6 0.9319 9.6602 0.4026 17 6 2.1969 9.5208 1.2586 18 6 3.6913 3.5903 1.1467 19 6 4.0740 2.8879 -0.1548 20 6 3.5655 1.4449 -0.1216 21 1 3.9988 0.9268 0.7338 22 7 3.9578 0.7608 -1.3562 23 6 5.1961 0.1849 -1.4562 24 1 5.8838 0.2355 -0.6249 25 6 5.5676 -0.4638 -2.6259 26 7 6.7581 -1.0168 -2.7221 27 14 4.3784 -0.5506 -4.0639 28 1 4.5815 0.6266 -4.9459 29 1 4.6245 -1.7954 -4.8352 30 1 2.9839 -0.5520 -3.5535 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.9907 1.5397 2.1547 37 1 0.5496 2.2173 1.3538 38 1 4.1285 5.4617 2.3342 39 1 -0.5420 6.7158 1.4108 40 1 0.0784 7.0551 -0.2240 41 1 -0.2777 9.0313 2.0724 42 1 -1.1262 9.0275 0.5074 43 1 1.1396 9.3202 -0.6120 44 1 0.6204 10.7046 0.3809 45 1 3.0469 9.9548 0.7318 46 1 2.0545 10.0313 2.2110 47 1 3.9622 4.6443 1.0849 48 1 4.2181 3.1237 1.9791 49 1 5.1584 2.8891 -0.2649 50 1 3.6223 3.4136 -0.9960 51 1 3.3403 0.7157 -2.1030 52 1 7.0178 -1.4698 -3.5396 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037909406.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:58:37 Heat of formation + Delta-G solvation = 18.544950 kcal Electronic energy + Delta-G solvation = -31795.278594 eV Core-core repulsion = 27794.954645 eV Total energy + Delta-G solvation = -4000.323949 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.60583 -41.20700 -39.16596 -37.69404 -36.35073 -35.41876 -34.23227 -33.64192 -31.61502 -31.45410 -30.48045 -29.37456 -26.93861 -25.64216 -24.99677 -24.71672 -23.35343 -22.85986 -22.19862 -21.49389 -20.85944 -19.81505 -19.51255 -18.32123 -17.63308 -17.24307 -17.01790 -16.62890 -16.17352 -16.04743 -15.69423 -15.39737 -15.22486 -15.13179 -15.10634 -14.77876 -14.67985 -14.58696 -14.49121 -14.06641 -13.95832 -13.90833 -13.25863 -13.09873 -12.95783 -12.87373 -12.60676 -12.55753 -12.29339 -12.12012 -12.05227 -12.04745 -11.93415 -11.85965 -11.64935 -11.57806 -11.39400 -11.16193 -11.00431 -10.87789 -10.71182 -9.83903 -9.47800 -9.24684 -7.99970 -5.31788 0.23938 1.28844 1.36738 1.38263 1.45657 1.70808 2.04404 2.13349 2.48687 3.19193 3.31515 3.33681 3.51451 3.54807 3.68159 3.73296 3.75827 3.92598 3.97791 4.09186 4.17071 4.24120 4.25863 4.27353 4.36525 4.42907 4.44621 4.45511 4.58936 4.66046 4.74166 4.77541 4.79345 4.84000 4.86206 4.90885 4.96412 4.99960 5.05356 5.10456 5.17716 5.24345 5.25813 5.30553 5.40421 5.43163 5.46026 5.59409 5.80642 6.01824 6.21179 6.24243 6.79544 6.96282 7.09990 7.86696 8.04961 9.21614 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013797 B = 0.002913 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.888885 B = 9609.256601 C =10362.513996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C -0.096 4.096 4 H 0.059 0.941 5 C 0.128 3.872 6 N -0.588 5.588 7 C 0.595 3.405 8 O -0.577 6.577 9 C -0.102 4.102 10 C 0.025 3.975 11 N -0.521 5.521 12 C 0.229 3.771 13 N -0.426 5.426 14 C 0.092 3.908 15 C -0.127 4.127 16 C -0.122 4.122 17 C -0.037 4.037 18 C 0.090 3.910 19 C -0.141 4.141 20 C 0.182 3.818 21 H 0.053 0.947 22 N -0.747 5.747 23 C -0.216 4.216 24 H 0.063 0.937 25 C -0.062 4.062 26 N -0.984 5.984 27 Si 0.945 3.055 28 H -0.285 1.285 29 H -0.299 1.299 30 H -0.253 1.253 31 H 0.064 0.936 32 H 0.048 0.952 33 H 0.061 0.939 34 H 0.050 0.950 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.203 0.797 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.115 0.885 43 H 0.066 0.934 44 H 0.115 0.885 45 H 0.107 0.893 46 H 0.109 0.891 47 H 0.113 0.887 48 H 0.094 0.906 49 H 0.067 0.933 50 H 0.047 0.953 51 H 0.362 0.638 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.874 21.760 9.959 29.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.149 4.149 3 C -0.116 4.116 4 H 0.078 0.922 5 C 0.006 3.994 6 N -0.319 5.319 7 C 0.384 3.616 8 O -0.458 6.458 9 C -0.219 4.219 10 C -0.128 4.128 11 N -0.239 5.239 12 C -0.033 4.033 13 N -0.107 5.107 14 C -0.029 4.029 15 C -0.165 4.165 16 C -0.160 4.160 17 C -0.076 4.076 18 C -0.032 4.032 19 C -0.182 4.182 20 C 0.074 3.926 21 H 0.072 0.928 22 N -0.389 5.389 23 C -0.347 4.347 24 H 0.081 0.919 25 C -0.253 4.253 26 N -0.635 5.635 27 Si 0.774 3.226 28 H -0.211 1.211 29 H -0.226 1.226 30 H -0.178 1.178 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.112 0.888 38 H 0.220 0.780 39 H 0.108 0.892 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.134 0.866 43 H 0.085 0.915 44 H 0.133 0.867 45 H 0.126 0.874 46 H 0.128 0.872 47 H 0.130 0.870 48 H 0.113 0.887 49 H 0.086 0.914 50 H 0.066 0.934 51 H 0.195 0.805 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -16.786 22.031 10.224 29.524 hybrid contribution -0.572 -1.368 -1.505 2.113 sum -17.358 20.663 8.718 28.360 Atomic orbital electron populations 1.21795 0.94642 1.02102 1.01902 1.21419 0.96272 0.94832 1.02421 1.21685 0.95353 0.96870 0.97666 0.92210 1.21748 0.99621 0.80775 0.97297 1.47844 1.09012 1.06081 1.68948 1.16929 0.85398 0.83000 0.76300 1.90744 1.15028 1.86872 1.53199 1.20566 0.96415 0.87469 1.17438 1.23320 0.93916 0.93132 1.02466 1.69994 1.24966 1.07679 1.21290 1.24346 0.84156 0.94960 0.99846 1.45362 1.13165 1.05078 1.47048 1.22349 0.78937 1.00718 1.00897 1.21973 1.01196 0.89828 1.03481 1.21728 0.92814 1.02767 0.98648 1.20573 1.00599 0.83319 1.03083 1.22499 0.78784 1.03737 0.98218 1.22360 1.01494 0.97486 0.96872 1.20408 0.92561 0.91031 0.88570 0.92849 1.42782 1.14918 1.66435 1.14730 1.19011 0.91259 1.25386 0.99088 0.91913 1.25367 0.98123 1.01167 1.00692 1.69863 1.21565 1.43774 1.28310 0.85553 0.80179 0.76670 0.80239 1.21136 1.22586 1.17798 0.91704 0.93334 0.91961 0.93083 0.91324 0.89422 0.88820 0.78030 0.89236 0.89708 0.90264 0.86629 0.91493 0.86694 0.87437 0.87241 0.86992 0.88740 0.91447 0.93442 0.80543 0.93558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 9.67 71.98 0.70 -2.73 16 2 C -0.11 -3.17 5.31 30.59 0.16 -3.01 16 3 C -0.10 -2.81 1.93 -10.72 -0.02 -2.83 16 4 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 5 C 0.13 3.27 5.33 86.36 0.46 3.73 16 6 N -0.59 -15.48 2.98 -824.35 -2.46 -17.94 16 7 C 0.59 17.08 7.57 86.47 0.65 17.74 16 8 O -0.58 -18.92 15.09 -4.29 -0.06 -18.99 16 9 C -0.10 -2.70 6.49 40.14 0.26 -2.44 16 10 C 0.03 0.63 9.54 84.12 0.80 1.43 16 11 N -0.52 -13.47 11.20 -186.67 -2.09 -15.56 16 12 C 0.23 4.89 7.64 138.30 1.06 5.94 16 13 N -0.43 -9.70 3.15 -501.16 -1.58 -11.28 16 14 C 0.09 1.59 6.51 86.48 0.56 2.15 16 15 C -0.13 -1.11 5.95 30.74 0.18 -0.93 16 16 C -0.12 -0.87 5.96 30.77 0.18 -0.69 16 17 C -0.04 -0.42 6.33 30.11 0.19 -0.23 16 18 C 0.09 2.22 5.35 86.22 0.46 2.68 16 19 C -0.14 -4.51 5.64 30.53 0.17 -4.34 16 20 C 0.18 6.41 2.20 45.02 0.10 6.50 16 21 H 0.05 1.95 8.08 -2.39 -0.02 1.93 16 22 N -0.75 -33.21 4.14 -322.83 -1.34 -34.54 16 23 C -0.22 -11.83 10.41 84.03 0.87 -10.96 16 24 H 0.06 3.74 8.06 -2.91 -0.02 3.71 16 25 C -0.06 -3.61 5.50 84.86 0.47 -3.14 16 26 N -0.98 -62.47 13.97 21.65 0.30 -62.17 16 27 Si 0.94 45.45 27.74 68.60 1.90 47.36 16 28 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 29 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 30 H -0.25 -11.03 6.52 99.48 0.65 -10.38 16 31 H 0.06 1.36 6.70 -2.39 -0.02 1.34 16 32 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.05 1.74 7.22 -2.39 -0.02 1.72 16 35 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.09 2.46 5.72 -2.39 -0.01 2.44 16 38 H 0.20 4.18 6.00 -2.91 -0.02 4.17 16 39 H 0.09 1.82 7.15 -2.39 -0.02 1.81 16 40 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.08 0.69 8.12 -2.39 -0.02 0.67 16 42 H 0.12 0.49 8.14 -2.38 -0.02 0.47 16 43 H 0.07 0.59 8.12 -2.39 -0.02 0.57 16 44 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 45 H 0.11 1.08 8.14 -2.38 -0.02 1.06 16 46 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.11 2.60 3.62 -2.39 -0.01 2.59 16 48 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 49 H 0.07 2.37 8.14 -2.39 -0.02 2.36 16 50 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 51 H 0.36 15.96 5.37 -92.70 -0.50 15.46 16 52 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -74.43 394.62 2.31 -72.12 By element: Atomic # 1 Polarization: 31.74 SS G_CDS: 0.37 Total: 32.11 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: 7.27 Total: 8.89 kcal Atomic # 7 Polarization: -134.33 SS G_CDS: -7.16 Total: -141.48 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.06 Total: -18.99 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.90 Total: 47.36 kcal Total: -74.43 2.31 -72.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037909406.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.664 kcal (2) G-P(sol) polarization free energy of solvation -74.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds