Wall clock time and date at job start Wed Apr 1 2020 05:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.46969 * 2 1 4 4 H 1.08992 * 109.52505 * 54.92063 * 3 2 1 5 5 C 1.53189 * 109.49751 * 294.83734 * 3 2 1 6 6 N 1.46932 * 108.77571 * 185.41676 * 5 3 2 7 7 C 1.34774 * 120.62862 * 233.62857 * 6 5 3 8 8 O 1.21680 * 119.99924 * 1.11942 * 7 6 5 9 9 C 1.46759 * 119.99849 * 181.11774 * 7 6 5 10 10 C 1.36829 * 126.91598 * 28.22536 * 9 7 6 11 11 N 1.33456 * 107.83930 * 179.85558 * 10 9 7 12 12 C 1.30549 * 109.68208 * 0.39079 * 11 10 9 13 13 N 1.34872 * 108.99245 * 359.79082 * 12 11 10 14 14 C 1.46444 * 124.99838 * 179.97438 * 13 12 11 15 15 C 1.53258 * 108.81856 * 342.94591 * 14 13 12 16 16 C 1.53158 * 109.44321 * 50.21930 * 15 14 13 17 17 C 1.51115 * 127.09375 * 179.82280 * 12 11 10 18 18 C 1.46925 * 118.73874 * 53.60899 * 6 5 3 19 19 C 1.53195 * 108.77429 * 306.39040 * 18 6 5 20 20 C 1.53043 * 109.31166 * 54.64025 * 19 18 6 21 21 H 1.09001 * 109.46023 * 178.63196 * 20 19 18 22 22 N 1.46497 * 109.46233 * 58.65135 * 20 19 18 23 23 C 1.36941 * 119.99846 * 85.00032 * 22 20 19 24 24 H 1.08001 * 119.99555 * 0.02562 * 23 22 20 25 25 C 1.38808 * 119.99752 * 180.02562 * 23 22 20 26 26 N 1.31620 * 120.00449 * 359.97438 * 25 23 22 27 27 Si 1.86807 * 119.99869 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.46804 * 359.97438 * 27 25 23 29 29 H 1.48501 * 109.47060 * 240.00100 * 27 25 23 30 30 H 1.48494 * 109.47124 * 119.99786 * 27 25 23 31 31 H 1.08997 * 109.47379 * 300.00253 * 1 2 3 32 32 H 1.08999 * 109.47392 * 59.99884 * 1 2 3 33 33 H 1.09001 * 109.47226 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47611 * 240.00184 * 2 1 3 35 35 H 1.08999 * 109.47392 * 120.00116 * 2 1 3 36 36 H 1.08989 * 109.58857 * 65.62780 * 5 3 2 37 37 H 1.09008 * 109.70314 * 305.27066 * 5 3 2 38 38 H 1.08008 * 126.08138 * 359.97438 * 10 9 7 39 39 H 1.08997 * 109.58418 * 102.74571 * 14 13 12 40 40 H 1.09001 * 109.57785 * 223.01313 * 14 13 12 41 41 H 1.08996 * 109.48139 * 170.21403 * 15 14 13 42 42 H 1.09004 * 109.48049 * 290.22810 * 15 14 13 43 43 H 1.09006 * 109.51165 * 50.59384 * 16 15 14 44 44 H 1.09006 * 109.51155 * 170.74085 * 16 15 14 45 45 H 1.08998 * 109.70727 * 44.24363 * 17 12 11 46 46 H 1.08993 * 109.74630 * 283.64200 * 17 12 11 47 47 H 1.08996 * 109.58798 * 186.60786 * 18 6 5 48 48 H 1.08999 * 109.59168 * 66.17745 * 18 6 5 49 49 H 1.09000 * 109.49936 * 294.68745 * 19 18 6 50 50 H 1.08999 * 109.52319 * 174.60220 * 19 18 6 51 51 H 0.97000 * 120.00367 * 264.99961 * 22 20 19 52 52 H 0.96998 * 119.99597 * 0.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6047 1.9828 0.8407 5 6 1.6384 2.1268 -1.3105 6 7 2.2450 3.4644 -1.3507 7 6 1.4856 4.5565 -1.5673 8 8 0.2828 4.4423 -1.7116 9 6 2.1094 5.8835 -1.6292 10 6 3.3888 6.1729 -2.0186 11 7 3.5530 7.4946 -1.9334 12 6 2.4510 8.0479 -1.5046 13 7 1.5273 7.0863 -1.3016 14 6 0.1640 7.3195 -0.8201 15 6 0.0936 8.7156 -0.1920 16 6 0.6899 9.7412 -1.1607 17 6 2.2043 9.5188 -1.2617 18 6 3.6952 3.5888 -1.1499 19 6 4.0736 2.8882 0.1588 20 6 3.5652 1.4450 0.1257 21 1 3.8543 0.9370 1.0457 22 7 4.1507 0.7475 -1.0219 23 6 5.3879 0.1706 -0.9140 24 1 5.9319 0.2295 0.0171 25 6 5.9429 -0.4898 -2.0015 26 7 5.2797 -0.5620 -3.1362 27 14 7.6304 -1.2774 -1.8543 28 1 8.1616 -1.0572 -0.4851 29 1 8.5506 -0.6653 -2.8461 30 1 7.5206 -2.7353 -2.1146 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 0.5533 2.2161 -1.3585 37 1 1.9945 1.5385 -2.1563 38 1 4.1328 5.4589 -2.3398 39 1 -0.5337 7.2592 -1.6553 40 1 -0.0934 6.5677 -0.0741 41 1 -0.9463 8.9704 0.0121 42 1 0.6594 8.7240 0.7397 43 1 0.2369 9.6189 -2.1446 44 1 0.4937 10.7479 -0.7914 45 1 2.6058 10.1008 -2.0913 46 1 2.6847 9.8241 -0.3322 47 1 3.9670 4.6427 -1.0919 48 1 4.2209 3.1189 -1.9811 49 1 3.6192 3.4148 0.9980 50 1 5.1576 2.8894 0.2725 51 1 3.6619 0.6943 -1.8580 52 1 4.4033 -0.1534 -3.2125 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037909409.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:58:43 Heat of formation + Delta-G solvation = 37.553605 kcal Electronic energy + Delta-G solvation = -32188.428593 eV Core-core repulsion = 28188.928922 eV Total energy + Delta-G solvation = -3999.499671 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.61824 -39.95918 -37.82359 -36.97550 -34.64487 -33.99939 -33.39810 -31.82403 -30.47522 -29.60411 -29.10990 -28.00133 -25.49107 -24.66013 -23.83159 -23.47324 -22.70032 -22.03613 -20.87999 -20.22997 -19.11593 -18.61200 -17.37239 -17.14263 -16.60982 -16.11740 -15.72210 -15.30353 -15.09493 -14.74627 -14.59147 -14.49581 -14.18873 -13.99591 -13.86968 -13.69485 -13.38128 -13.33547 -13.15870 -13.03220 -12.72319 -12.26381 -12.15370 -11.70524 -11.62220 -11.59492 -11.56112 -11.46543 -11.18623 -10.87898 -10.70539 -10.55159 -10.44770 -10.29547 -10.17586 -10.04693 -9.90309 -9.77285 -9.70883 -9.16595 -8.92369 -8.53653 -8.27989 -7.03944 -6.10278 -3.10879 1.33101 2.30336 2.74775 3.19873 3.31129 3.51818 3.57631 3.66823 3.97061 4.15795 4.23155 4.28910 4.55693 4.66033 4.83638 4.93330 5.02470 5.05501 5.13477 5.16605 5.22029 5.26490 5.27054 5.38020 5.40563 5.44888 5.46253 5.54059 5.57497 5.62840 5.67574 5.69710 5.72769 5.80422 5.95018 6.03093 6.05391 6.10224 6.22678 6.28418 6.34383 6.43142 6.47002 6.55059 6.60594 6.68364 6.81530 6.90401 6.92289 7.54002 7.81801 7.83795 8.21515 8.74478 9.20703 10.07134 10.22481 11.37479 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013994 B = 0.003135 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.422128 B = 8929.996316 C =10322.296768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.104 4.104 4 H 0.067 0.933 5 C 0.122 3.878 6 N -0.584 5.584 7 C 0.590 3.410 8 O -0.557 6.557 9 C -0.072 4.072 10 C 0.026 3.974 11 N -0.490 5.490 12 C 0.222 3.778 13 N -0.422 5.422 14 C 0.106 3.894 15 C -0.136 4.136 16 C -0.127 4.127 17 C -0.034 4.034 18 C 0.088 3.912 19 C -0.148 4.148 20 C 0.184 3.816 21 H 0.052 0.948 22 N -0.729 5.729 23 C -0.328 4.328 24 H 0.064 0.936 25 C -0.043 4.043 26 N -0.944 5.944 27 Si 1.082 2.918 28 H -0.296 1.296 29 H -0.294 1.294 30 H -0.294 1.294 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.191 0.809 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.084 0.916 45 H 0.098 0.902 46 H 0.092 0.908 47 H 0.095 0.905 48 H 0.085 0.915 49 H 0.047 0.953 50 H 0.076 0.924 51 H 0.366 0.634 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.214 18.362 7.393 22.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.124 4.124 4 H 0.085 0.915 5 C 0.000 4.000 6 N -0.315 5.315 7 C 0.378 3.622 8 O -0.437 6.437 9 C -0.189 4.189 10 C -0.127 4.127 11 N -0.208 5.208 12 C -0.040 4.040 13 N -0.104 5.104 14 C -0.016 4.016 15 C -0.174 4.174 16 C -0.165 4.165 17 C -0.073 4.073 18 C -0.034 4.034 19 C -0.189 4.189 20 C 0.074 3.926 21 H 0.070 0.930 22 N -0.373 5.373 23 C -0.459 4.459 24 H 0.082 0.918 25 C -0.241 4.241 26 N -0.589 5.589 27 Si 0.914 3.086 28 H -0.222 1.222 29 H -0.221 1.221 30 H -0.222 1.222 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.107 0.893 37 H 0.091 0.909 38 H 0.208 0.792 39 H 0.109 0.891 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.095 0.905 43 H 0.091 0.909 44 H 0.103 0.897 45 H 0.116 0.884 46 H 0.111 0.889 47 H 0.113 0.887 48 H 0.103 0.897 49 H 0.066 0.934 50 H 0.095 0.905 51 H 0.201 0.799 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.009 17.827 6.576 21.476 hybrid contribution -1.855 0.231 0.789 2.029 sum -11.864 18.058 7.365 22.827 Atomic orbital electron populations 1.21853 0.96683 1.01156 1.01370 1.21403 0.94368 0.95602 1.03307 1.21776 0.97597 0.96146 0.96879 0.91458 1.21714 0.98904 0.81002 0.98338 1.47805 1.09019 1.05950 1.68724 1.16781 0.85739 0.82522 0.77151 1.90767 1.14107 1.86589 1.52214 1.20640 0.95748 0.87201 1.15339 1.23101 0.93979 0.92658 1.02912 1.69969 1.23739 1.07462 1.19648 1.23438 0.85140 0.93256 1.02162 1.45104 1.12370 1.05593 1.47320 1.22038 0.80384 0.98525 1.00661 1.21957 1.03194 0.92849 0.99387 1.21711 0.94552 0.99846 1.00393 1.20273 0.96679 0.86236 1.04117 1.22465 0.78718 1.02159 1.00047 1.22496 1.01997 0.98956 0.95423 1.20157 0.89391 0.90668 0.92398 0.93035 1.42477 1.19520 1.65127 1.10193 1.20067 0.94667 1.31516 0.99623 0.91767 1.25677 1.05530 1.00186 0.92726 1.70836 1.14535 1.47689 1.25879 0.83183 0.74791 0.76225 0.74408 1.22204 1.22101 1.22171 0.93309 0.92808 0.93032 0.90821 0.91856 0.89344 0.90923 0.79244 0.89113 0.88870 0.89021 0.90541 0.90945 0.89734 0.88356 0.88935 0.88722 0.89658 0.93389 0.90513 0.79908 0.93444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.67 37.15 0.36 -1.68 16 2 C -0.11 -1.71 5.19 -26.73 -0.14 -1.85 16 3 C -0.10 -1.68 2.14 -90.50 -0.19 -1.87 16 4 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 5 C 0.12 2.04 5.03 -3.71 -0.02 2.02 16 6 N -0.58 -9.64 2.97 -174.28 -0.52 -10.16 16 7 C 0.59 9.98 7.57 -12.82 -0.10 9.88 16 8 O -0.56 -10.39 15.74 5.21 0.08 -10.31 16 9 C -0.07 -1.11 6.49 -82.35 -0.53 -1.65 16 10 C 0.03 0.40 9.55 -17.36 -0.17 0.23 16 11 N -0.49 -7.32 11.20 -10.35 -0.12 -7.44 16 12 C 0.22 2.77 7.63 -155.33 -1.19 1.58 16 13 N -0.42 -5.50 3.15 -109.77 -0.35 -5.84 16 14 C 0.11 1.05 6.17 -3.94 -0.02 1.03 16 15 C -0.14 -0.84 5.95 -26.52 -0.16 -1.00 16 16 C -0.13 -0.72 5.96 -26.44 -0.16 -0.88 16 17 C -0.03 -0.26 6.33 -27.47 -0.17 -0.44 16 18 C 0.09 1.43 5.13 -3.71 -0.02 1.42 16 19 C -0.15 -2.50 5.78 -26.61 -0.15 -2.65 16 20 C 0.18 3.43 2.53 -67.89 -0.17 3.26 16 21 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 22 N -0.73 -16.56 3.72 -53.38 -0.20 -16.76 16 23 C -0.33 -8.60 9.93 -15.06 -0.15 -8.75 16 24 H 0.06 1.69 7.83 -52.49 -0.41 1.28 16 25 C -0.04 -1.21 5.50 -17.43 -0.10 -1.30 16 26 N -0.94 -28.12 13.70 55.49 0.76 -27.36 16 27 Si 1.08 25.43 29.92 -169.99 -5.09 20.35 16 28 H -0.30 -6.54 7.11 56.52 0.40 -6.14 16 29 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 30 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.72 6.70 -51.93 -0.35 0.37 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 1.34 7.70 -51.93 -0.40 0.94 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.09 1.47 5.72 -51.94 -0.30 1.17 16 37 H 0.07 1.32 6.65 -51.92 -0.35 0.97 16 38 H 0.19 2.70 6.00 -52.48 -0.31 2.39 16 39 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.09 0.99 8.12 -51.93 -0.42 0.57 16 41 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 0.48 8.12 -51.93 -0.42 0.06 16 43 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 44 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 45 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.10 1.41 3.61 -51.93 -0.19 1.22 16 48 H 0.09 1.59 7.74 -51.93 -0.40 1.19 16 49 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 51 H 0.37 8.71 4.78 -40.82 -0.20 8.51 16 52 H 0.25 7.46 6.77 -40.82 -0.28 7.18 16 LS Contribution 393.76 15.07 5.93 5.93 Total: -1.00 -32.49 393.76 -10.87 -43.36 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -8.31 Total: 10.88 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -3.08 Total: -2.66 kcal Atomic # 7 Polarization: -67.14 SS G_CDS: -0.42 Total: -67.56 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.08 Total: -10.31 kcal Atomic # 14 Polarization: 25.43 SS G_CDS: -5.09 Total: 20.35 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.49 -10.87 -43.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037909409.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.918 kcal (2) G-P(sol) polarization free energy of solvation -32.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds