Wall clock time and date at job start Wed Apr 1 2020 05:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47231 * 2 1 4 4 H 1.08995 * 109.52537 * 305.08004 * 3 2 1 5 5 C 1.53198 * 109.49637 * 65.16477 * 3 2 1 6 6 N 1.46924 * 108.77659 * 174.58749 * 5 3 2 7 7 C 1.34774 * 120.62950 * 126.36378 * 6 5 3 8 8 O 1.21683 * 120.00445 * 353.03224 * 7 6 5 9 9 C 1.46774 * 119.99674 * 173.02700 * 7 6 5 10 10 C 1.36829 * 126.91044 * 335.47132 * 9 7 6 11 11 N 1.33460 * 107.82830 * 179.97438 * 10 9 7 12 12 C 1.30547 * 109.68537 * 359.97438 * 11 10 9 13 13 N 1.34872 * 108.99405 * 359.78146 * 12 11 10 14 14 C 1.46445 * 124.99025 * 179.52484 * 13 12 11 15 15 C 1.53264 * 108.88714 * 343.49753 * 14 13 12 16 16 C 1.53158 * 109.44061 * 49.99360 * 15 14 13 17 17 C 1.51120 * 127.08878 * 180.02562 * 12 11 10 18 18 C 1.46927 * 118.73797 * 306.38928 * 6 5 3 19 19 C 1.53164 * 108.76791 * 53.61135 * 18 6 5 20 20 C 1.53036 * 109.49843 * 184.99986 * 3 2 1 21 21 H 1.08996 * 109.46239 * 58.67808 * 20 3 2 22 22 N 1.46503 * 109.46130 * 298.70200 * 20 3 2 23 23 C 1.36941 * 119.99893 * 154.97188 * 22 20 3 24 24 H 1.07997 * 120.00152 * 0.02562 * 23 22 20 25 25 C 1.38816 * 119.99866 * 180.02562 * 23 22 20 26 26 N 1.31617 * 119.99634 * 180.02562 * 25 23 22 27 27 Si 1.86793 * 120.00042 * 0.02562 * 25 23 22 28 28 H 1.48498 * 109.47203 * 269.99836 * 27 25 23 29 29 H 1.48500 * 109.47344 * 30.00134 * 27 25 23 30 30 H 1.48497 * 109.47329 * 149.99948 * 27 25 23 31 31 H 1.08995 * 109.47101 * 299.99521 * 1 2 3 32 32 H 1.08999 * 109.47215 * 59.99998 * 1 2 3 33 33 H 1.09005 * 109.46883 * 179.97438 * 1 2 3 34 34 H 1.09006 * 109.47249 * 239.99997 * 2 1 3 35 35 H 1.09000 * 109.47026 * 120.00521 * 2 1 3 36 36 H 1.09006 * 109.58416 * 294.37379 * 5 3 2 37 37 H 1.08999 * 109.58694 * 54.79550 * 5 3 2 38 38 H 1.07993 * 126.08756 * 359.94696 * 10 9 7 39 39 H 1.08995 * 109.74274 * 223.55779 * 14 13 12 40 40 H 1.09005 * 109.46135 * 103.26706 * 14 13 12 41 41 H 1.09000 * 109.47538 * 290.00680 * 15 14 13 42 42 H 1.08994 * 109.47777 * 169.98926 * 15 14 13 43 43 H 1.08997 * 109.50903 * 170.73691 * 16 15 14 44 44 H 1.09005 * 109.55004 * 50.61420 * 16 15 14 45 45 H 1.09000 * 109.70836 * 283.65449 * 17 12 11 46 46 H 1.09006 * 109.70885 * 44.27156 * 17 12 11 47 47 H 1.08999 * 109.58606 * 173.39395 * 18 6 5 48 48 H 1.08998 * 109.58616 * 293.68075 * 18 6 5 49 49 H 1.09001 * 109.47796 * 185.40690 * 19 18 6 50 50 H 1.08991 * 109.50618 * 65.31465 * 19 18 6 51 51 H 0.96991 * 120.00283 * 334.98211 * 22 20 3 52 52 H 0.97004 * 119.99691 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9827 -0.8407 5 6 1.6386 2.1267 1.3106 6 7 2.2451 3.4643 1.3508 7 6 1.4857 4.5564 1.5674 8 8 0.2735 4.4568 1.6054 9 6 2.1207 5.8659 1.7574 10 6 3.3927 6.1057 2.2011 11 7 3.5731 7.4278 2.2293 12 6 2.4859 8.0287 1.8278 13 7 1.5589 7.0989 1.5192 14 6 0.2056 7.3890 1.0407 15 6 -0.1218 8.8565 1.3376 16 6 1.0190 9.7454 0.8334 17 6 2.2595 9.5179 1.7067 18 6 3.6953 3.5887 1.1500 19 6 4.0734 2.8883 -0.1586 20 6 3.5652 1.4450 -0.1257 21 1 3.8546 0.9371 -1.0457 22 7 4.1507 0.7475 1.0219 23 6 5.3883 0.1713 0.9143 24 1 5.9329 0.2314 -0.0164 25 6 5.9429 -0.4901 2.0015 26 7 7.1326 -1.0434 1.8982 27 14 5.0007 -0.5947 3.6110 28 1 5.3438 0.5728 4.4622 29 1 3.5421 -0.5921 3.3318 30 1 5.3670 -1.8478 4.3185 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 0.5533 2.2160 1.3586 37 1 1.9965 1.5376 2.1549 38 1 4.1208 5.3583 2.4793 39 1 -0.5110 6.7446 1.5499 40 1 0.1550 7.2136 -0.0340 41 1 -0.2402 8.9921 2.4126 42 1 -1.0475 9.1318 0.8324 43 1 0.7189 10.7915 0.8929 44 1 1.2497 9.4910 -0.2012 45 1 2.0970 9.9466 2.6956 46 1 3.1273 9.9851 1.2411 47 1 3.9670 4.6427 1.0920 48 1 4.2209 3.1211 1.9824 49 1 5.1576 2.8897 -0.2715 50 1 3.6190 3.4148 -0.9977 51 1 3.6618 0.6937 1.8578 52 1 7.5200 -1.5059 2.6578 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037909410.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:58:49 Heat of formation + Delta-G solvation = 39.198278 kcal Electronic energy + Delta-G solvation = -32238.119453 eV Core-core repulsion = 28238.691100 eV Total energy + Delta-G solvation = -3999.428353 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.63940 -40.01999 -37.88275 -36.98961 -34.66906 -33.89093 -33.40484 -31.79194 -30.48324 -29.84069 -29.57035 -28.25752 -25.64428 -24.72018 -23.87958 -23.30156 -22.68282 -22.03356 -20.85672 -20.26731 -19.09430 -18.53668 -17.90007 -17.08475 -16.45368 -16.34468 -15.83750 -15.12433 -14.91469 -14.74104 -14.61123 -14.49139 -14.38919 -14.12690 -13.90548 -13.69061 -13.42655 -13.30589 -13.12841 -13.05022 -12.50922 -12.42975 -12.25047 -11.81590 -11.69301 -11.62511 -11.56550 -11.47874 -11.28651 -11.04609 -10.94802 -10.80580 -10.46355 -10.37242 -10.26992 -10.21957 -9.85506 -9.82580 -9.71771 -9.56448 -8.95802 -8.58840 -8.33163 -7.29189 -5.79400 -3.14832 1.27655 2.29145 2.71705 3.15974 3.27865 3.33949 3.36557 3.43855 3.95486 4.14484 4.21328 4.29925 4.51836 4.55969 4.80124 4.91670 4.98514 5.04233 5.08089 5.15403 5.18831 5.22596 5.26247 5.32604 5.34828 5.40675 5.42147 5.51578 5.52357 5.54744 5.61332 5.66092 5.68179 5.74662 5.86854 6.00176 6.00652 6.05373 6.16705 6.24423 6.31155 6.40386 6.43453 6.50525 6.56148 6.65597 6.74517 6.86742 6.90005 7.47945 7.81373 7.96830 8.16090 8.39627 9.17645 9.90223 10.09881 11.39014 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014018 B = 0.003318 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.901691 B = 8437.166375 C = 9546.990143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.106 4.106 4 H 0.072 0.928 5 C 0.120 3.880 6 N -0.588 5.588 7 C 0.593 3.407 8 O -0.557 6.557 9 C -0.076 4.076 10 C 0.029 3.971 11 N -0.490 5.490 12 C 0.223 3.777 13 N -0.422 5.422 14 C 0.100 3.900 15 C -0.136 4.136 16 C -0.127 4.127 17 C -0.035 4.035 18 C 0.090 3.910 19 C -0.148 4.148 20 C 0.184 3.816 21 H 0.061 0.939 22 N -0.743 5.743 23 C -0.240 4.240 24 H 0.091 0.909 25 C 0.007 3.993 26 N -0.933 5.933 27 Si 0.877 3.123 28 H -0.284 1.284 29 H -0.278 1.278 30 H -0.291 1.291 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.069 0.931 38 H 0.190 0.810 39 H 0.105 0.895 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.072 0.928 45 H 0.092 0.908 46 H 0.099 0.901 47 H 0.094 0.906 48 H 0.083 0.917 49 H 0.082 0.918 50 H 0.051 0.949 51 H 0.360 0.640 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.416 19.588 -3.563 25.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.126 4.126 4 H 0.090 0.910 5 C -0.002 4.002 6 N -0.319 5.319 7 C 0.381 3.619 8 O -0.437 6.437 9 C -0.193 4.193 10 C -0.124 4.124 11 N -0.209 5.209 12 C -0.039 4.039 13 N -0.103 5.103 14 C -0.022 4.022 15 C -0.173 4.173 16 C -0.165 4.165 17 C -0.073 4.073 18 C -0.032 4.032 19 C -0.189 4.189 20 C 0.074 3.926 21 H 0.078 0.922 22 N -0.387 5.387 23 C -0.370 4.370 24 H 0.108 0.892 25 C -0.188 4.188 26 N -0.580 5.580 27 Si 0.707 3.293 28 H -0.210 1.210 29 H -0.204 1.204 30 H -0.218 1.218 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.087 0.913 38 H 0.207 0.793 39 H 0.123 0.877 40 H 0.103 0.897 41 H 0.095 0.905 42 H 0.110 0.890 43 H 0.102 0.898 44 H 0.090 0.910 45 H 0.111 0.889 46 H 0.117 0.883 47 H 0.111 0.889 48 H 0.102 0.898 49 H 0.100 0.900 50 H 0.070 0.930 51 H 0.194 0.806 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.285 19.822 -3.455 25.268 hybrid contribution -1.106 -0.770 1.033 1.699 sum -16.392 19.052 -2.422 25.249 Atomic orbital electron populations 1.21857 0.96642 1.01178 1.01430 1.21437 0.94459 0.95628 1.03415 1.21799 0.97560 0.96202 0.97010 0.90991 1.21742 0.99113 0.81008 0.98324 1.47813 1.09098 1.05954 1.69026 1.16773 0.85857 0.82395 0.76877 1.90750 1.13477 1.86130 1.53365 1.20627 0.96418 0.86512 1.15708 1.23119 0.93970 0.93134 1.02158 1.69978 1.24007 1.06133 1.20738 1.23458 0.85200 0.93759 1.01441 1.45111 1.12867 1.05061 1.47283 1.22128 0.81067 0.97996 1.01009 1.21945 0.99745 0.92611 1.03016 1.21713 0.94151 1.00782 0.99886 1.20283 0.99470 0.85694 1.01901 1.22412 0.78589 1.02110 1.00080 1.22484 1.02433 0.98573 0.95374 1.20198 0.89293 0.90782 0.92283 0.92152 1.42835 1.19678 1.65786 1.10399 1.19047 0.91856 1.26876 0.99240 0.89151 1.24630 0.96435 1.00274 0.97509 1.69689 1.16264 1.41210 1.30885 0.86681 0.79567 0.77527 0.85486 1.21040 1.20429 1.21766 0.92896 0.93148 0.93022 0.91447 0.91026 0.89127 0.91269 0.79340 0.87668 0.89702 0.90511 0.89044 0.89753 0.90966 0.88947 0.88309 0.88858 0.89848 0.89976 0.93034 0.80629 0.93069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.67 37.16 0.36 -1.56 16 2 C -0.11 -1.65 5.19 -26.73 -0.14 -1.79 16 3 C -0.11 -1.61 2.14 -90.50 -0.19 -1.80 16 4 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 5 C 0.12 1.88 5.04 -3.71 -0.02 1.87 16 6 N -0.59 -9.18 2.97 -174.29 -0.52 -9.70 16 7 C 0.59 9.53 7.58 -12.81 -0.10 9.43 16 8 O -0.56 -9.87 15.00 5.20 0.08 -9.79 16 9 C -0.08 -1.12 6.48 -82.35 -0.53 -1.65 16 10 C 0.03 0.43 9.53 -17.35 -0.17 0.26 16 11 N -0.49 -7.14 11.20 -10.36 -0.12 -7.26 16 12 C 0.22 2.70 7.63 -155.33 -1.19 1.52 16 13 N -0.42 -5.30 3.16 -109.76 -0.35 -5.65 16 14 C 0.10 0.95 6.46 -3.93 -0.03 0.93 16 15 C -0.14 -0.82 5.95 -26.51 -0.16 -0.97 16 16 C -0.13 -0.68 5.96 -26.44 -0.16 -0.84 16 17 C -0.03 -0.26 6.33 -27.47 -0.17 -0.43 16 18 C 0.09 1.38 4.90 -3.72 -0.02 1.36 16 19 C -0.15 -2.36 5.78 -26.62 -0.15 -2.52 16 20 C 0.18 3.24 2.53 -67.89 -0.17 3.07 16 21 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 22 N -0.74 -15.92 3.53 -53.38 -0.19 -16.11 16 23 C -0.24 -6.30 10.41 -15.06 -0.16 -6.46 16 24 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 25 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 26 N -0.93 -28.44 13.97 55.49 0.78 -27.67 16 27 Si 0.88 21.44 27.73 -169.99 -4.71 16.73 16 28 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 29 H -0.28 -6.37 6.52 56.52 0.37 -6.00 16 30 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 31 H 0.05 0.66 6.70 -51.93 -0.35 0.31 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.07 1.21 7.70 -51.93 -0.40 0.81 16 36 H 0.09 1.41 5.72 -51.93 -0.30 1.12 16 37 H 0.07 1.17 6.64 -51.93 -0.34 0.82 16 38 H 0.19 2.57 6.02 -52.49 -0.32 2.25 16 39 H 0.11 1.15 7.13 -51.93 -0.37 0.78 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.08 0.48 8.12 -51.93 -0.42 0.06 16 42 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 45 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 47 H 0.09 1.31 3.97 -51.93 -0.21 1.11 16 48 H 0.08 1.42 7.74 -51.93 -0.40 1.01 16 49 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 50 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 51 H 0.36 7.76 3.81 -40.82 -0.16 7.60 16 52 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 391.05 15.07 5.89 5.89 Total: -1.00 -32.57 391.05 -10.57 -43.14 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -8.34 Total: 9.88 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -3.08 Total: 0.52 kcal Atomic # 7 Polarization: -65.98 SS G_CDS: -0.39 Total: -66.37 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.08 Total: -9.79 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.71 Total: 16.73 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.57 -10.57 -43.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037909410.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.335 kcal (2) G-P(sol) polarization free energy of solvation -32.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds