Wall clock time and date at job start Wed Apr 1 2020 05:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47120 * 2 1 4 4 H 1.08995 * 109.49822 * 305.06287 * 3 2 1 5 5 C 1.53625 * 109.43267 * 65.29084 * 3 2 1 6 6 N 1.46921 * 108.54233 * 174.72415 * 5 3 2 7 7 C 1.34784 * 120.63160 * 126.36355 * 6 5 3 8 8 O 1.21517 * 119.99683 * 3.34495 * 7 6 5 9 9 C 1.48156 * 120.00287 * 183.34030 * 7 6 5 10 10 C 1.40022 * 120.88026 * 310.34683 * 9 7 6 11 11 C 1.37952 * 119.17509 * 180.29640 * 10 9 7 12 12 N 1.31920 * 121.00038 * 359.44942 * 11 10 9 13 13 C 1.32328 * 121.94509 * 0.54168 * 12 11 10 14 14 N 1.39024 * 119.64578 * 179.72656 * 13 12 11 15 15 C 1.46494 * 119.99788 * 185.02651 * 14 13 12 16 16 C 1.46497 * 119.99851 * 5.02373 * 14 13 12 17 17 C 1.39123 * 120.70549 * 359.75001 * 13 12 11 18 18 C 1.46921 * 118.73993 * 306.08913 * 6 5 3 19 19 C 1.53188 * 108.77696 * 53.86106 * 18 6 5 20 20 C 1.53042 * 109.49545 * 184.99687 * 3 2 1 21 21 H 1.08999 * 109.44834 * 58.66951 * 20 3 2 22 22 N 1.46497 * 109.46257 * 298.70354 * 20 3 2 23 23 C 1.36934 * 120.00125 * 154.93133 * 22 20 3 24 24 H 1.07997 * 120.00539 * 0.02562 * 23 22 20 25 25 C 1.38815 * 119.99860 * 180.02562 * 23 22 20 26 26 N 1.31614 * 120.00466 * 359.97438 * 25 23 22 27 27 Si 1.86811 * 119.99674 * 180.02562 * 25 23 22 28 28 H 1.48495 * 109.46791 * 90.00108 * 27 25 23 29 29 H 1.48507 * 109.46772 * 209.99710 * 27 25 23 30 30 H 1.48499 * 109.47296 * 329.99888 * 27 25 23 31 31 H 1.09006 * 109.46806 * 60.00218 * 1 2 3 32 32 H 1.09003 * 109.47347 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47589 * 300.00243 * 1 2 3 34 34 H 1.08997 * 109.47160 * 239.99435 * 2 1 3 35 35 H 1.09006 * 109.46806 * 119.99782 * 2 1 3 36 36 H 1.08993 * 109.74088 * 54.97942 * 5 3 2 37 37 H 1.09004 * 109.66131 * 294.41354 * 5 3 2 38 38 H 1.07999 * 120.41339 * 0.02722 * 10 9 7 39 39 H 1.07994 * 119.49950 * 179.72767 * 11 10 9 40 40 H 1.08996 * 109.47736 * 59.99655 * 15 14 13 41 41 H 1.09002 * 109.47097 * 180.02562 * 15 14 13 42 42 H 1.09000 * 109.47076 * 299.99610 * 15 14 13 43 43 H 1.09002 * 109.46926 * 89.99650 * 16 14 13 44 44 H 1.08998 * 109.47297 * 210.00273 * 16 14 13 45 45 H 1.09007 * 109.47421 * 330.00054 * 16 14 13 46 46 H 1.07997 * 120.53062 * 179.97438 * 17 13 12 47 47 H 1.09004 * 109.58825 * 173.64909 * 18 6 5 48 48 H 1.09003 * 109.58478 * 294.07167 * 18 6 5 49 49 H 1.09005 * 109.49700 * 65.31768 * 19 18 6 50 50 H 1.08994 * 109.50186 * 185.38071 * 19 18 6 51 51 H 0.97007 * 120.00145 * 334.93557 * 22 20 3 52 52 H 0.97000 * 120.00783 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9822 -0.8410 5 6 1.6394 2.1262 1.3161 6 7 2.2451 3.4643 1.3507 7 6 1.4858 4.5565 1.5681 8 8 0.2988 4.4352 1.7981 9 6 2.0983 5.9048 1.5267 10 6 3.2665 6.1859 2.2457 11 6 3.8034 7.4553 2.1868 12 7 3.2391 8.3985 1.4573 13 6 2.1353 8.1791 0.7612 14 7 1.5779 9.2096 0.0129 15 6 0.2984 9.0087 -0.6715 16 6 2.2701 10.4966 -0.0911 17 6 1.5264 6.9282 0.7707 18 6 3.6952 3.5887 1.1499 19 6 4.0737 2.8880 -0.1587 20 6 3.5652 1.4449 -0.1257 21 1 3.8544 0.9368 -1.0456 22 7 4.1507 0.7475 1.0219 23 6 5.3878 0.1705 0.9141 24 1 5.9323 0.2300 -0.0167 25 6 5.9423 -0.4909 2.0014 26 7 5.2792 -0.5630 3.1360 27 14 7.6304 -1.2773 1.8546 28 1 8.6712 -0.2907 2.2398 29 1 7.7076 -2.4555 2.7553 30 1 7.8543 -1.7109 0.4520 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 2.0007 1.5395 2.1606 37 1 0.5542 2.2149 1.3678 38 1 3.7389 5.4196 2.8424 39 1 4.7018 7.6790 2.7428 40 1 -0.4720 8.7689 0.0614 41 1 0.0237 9.9197 -1.2031 42 1 0.3916 8.1877 -1.3824 43 1 2.9405 10.4801 -0.9505 44 1 1.5378 11.2940 -0.2167 45 1 2.8474 10.6731 0.8166 46 1 0.6254 6.7523 0.2019 47 1 3.9670 4.6427 1.0919 48 1 4.2209 3.1189 1.9812 49 1 3.6194 3.4147 -0.9980 50 1 5.1578 2.8898 -0.2721 51 1 3.6619 0.6942 1.8581 52 1 5.6667 -1.0248 3.8959 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037928903.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:55:47 Heat of formation + Delta-G solvation = 29.519427 kcal Electronic energy + Delta-G solvation = -31628.980597 eV Core-core repulsion = 27629.132538 eV Total energy + Delta-G solvation = -3999.848060 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.83414 -39.62475 -37.80110 -36.65526 -34.51842 -33.76952 -32.59730 -31.69725 -30.64045 -29.42031 -28.70045 -28.30785 -25.88757 -25.26942 -23.95070 -23.55028 -23.23973 -22.06880 -20.78639 -19.79513 -18.49796 -17.55269 -17.32716 -16.88741 -16.26621 -15.79300 -15.68205 -15.51419 -15.02046 -14.62040 -14.56026 -14.27560 -14.06785 -13.98143 -13.64337 -13.43893 -13.27984 -13.08192 -12.96953 -12.89790 -12.57253 -12.51093 -12.33181 -12.18965 -11.85544 -11.74383 -11.42934 -11.09304 -10.99901 -10.81281 -10.77647 -10.33866 -10.29116 -10.22557 -10.16082 -9.93275 -9.82049 -9.75172 -9.56452 -9.34920 -8.92946 -8.27144 -7.73249 -6.99067 -5.80445 -3.08880 0.93604 1.22207 2.63072 2.87435 3.19336 3.40418 3.46605 3.47811 3.80664 4.35717 4.48291 4.56154 4.74174 4.87157 5.02920 5.05783 5.10485 5.12508 5.21686 5.25771 5.33313 5.37265 5.39790 5.51961 5.54343 5.58277 5.59578 5.60681 5.67910 5.69796 5.81338 5.81753 5.90454 6.06949 6.12913 6.14501 6.18971 6.31717 6.35655 6.37883 6.41423 6.55344 6.62116 6.68344 6.70154 6.75307 6.92853 6.98856 7.12865 7.62900 7.67477 7.98274 8.26528 8.37928 9.49737 10.06110 10.41335 11.41872 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012640 B = 0.003033 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.679377 B = 9229.649317 C =10605.357983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.103 4.103 4 H 0.066 0.934 5 C 0.118 3.882 6 N -0.589 5.589 7 C 0.555 3.445 8 O -0.543 6.543 9 C -0.029 4.029 10 C -0.204 4.204 11 C 0.147 3.853 12 N -0.534 5.534 13 C 0.398 3.602 14 N -0.620 5.620 15 C 0.097 3.903 16 C 0.101 3.899 17 C -0.189 4.189 18 C 0.102 3.898 19 C -0.149 4.149 20 C 0.178 3.822 21 H 0.051 0.949 22 N -0.718 5.718 23 C -0.237 4.237 24 H 0.069 0.931 25 C -0.011 4.011 26 N -0.932 5.932 27 Si 0.903 3.097 28 H -0.291 1.291 29 H -0.293 1.293 30 H -0.283 1.283 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.142 0.858 39 H 0.162 0.838 40 H 0.058 0.942 41 H 0.078 0.922 42 H 0.058 0.942 43 H 0.046 0.954 44 H 0.061 0.939 45 H 0.079 0.921 46 H 0.136 0.864 47 H 0.081 0.919 48 H 0.088 0.912 49 H 0.047 0.953 50 H 0.075 0.925 51 H 0.384 0.616 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.176 17.469 -7.069 20.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.122 4.122 4 H 0.084 0.916 5 C -0.003 4.003 6 N -0.319 5.319 7 C 0.343 3.657 8 O -0.422 6.422 9 C -0.040 4.040 10 C -0.226 4.226 11 C -0.010 4.010 12 N -0.252 5.252 13 C 0.164 3.836 14 N -0.335 5.335 15 C -0.047 4.047 16 C -0.042 4.042 17 C -0.215 4.215 18 C -0.020 4.020 19 C -0.190 4.190 20 C 0.068 3.932 21 H 0.069 0.931 22 N -0.361 5.361 23 C -0.368 4.368 24 H 0.087 0.913 25 C -0.207 4.207 26 N -0.580 5.580 27 Si 0.735 3.265 28 H -0.218 1.218 29 H -0.219 1.219 30 H -0.209 1.209 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.160 0.840 39 H 0.179 0.821 40 H 0.077 0.923 41 H 0.097 0.903 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.080 0.920 45 H 0.098 0.902 46 H 0.154 0.846 47 H 0.099 0.901 48 H 0.106 0.894 49 H 0.066 0.934 50 H 0.093 0.907 51 H 0.219 0.781 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.345 18.253 -7.131 21.299 hybrid contribution 0.623 -1.303 0.246 1.465 sum -7.722 16.950 -6.885 19.858 Atomic orbital electron populations 1.21857 0.96823 1.01062 1.01334 1.21417 0.94261 0.95690 1.03425 1.21828 0.97454 0.96154 0.96812 0.91576 1.21839 0.98793 0.81211 0.98494 1.48058 1.09003 1.06250 1.68612 1.18273 0.86066 0.84002 0.77405 1.90754 1.15191 1.86516 1.49724 1.20037 0.94303 0.93813 0.95833 1.22106 0.97006 0.99403 1.04134 1.22358 0.97679 0.87759 0.93189 1.67000 1.11116 1.35932 1.11133 1.18124 0.89561 0.86512 0.89426 1.46145 1.22741 1.11852 1.52723 1.21687 0.83902 1.02398 0.96675 1.21577 0.96844 0.83196 1.02626 1.21324 1.03290 0.91729 1.05154 1.22097 0.78737 1.01071 1.00076 1.22524 1.01838 0.99179 0.95501 1.20226 0.89678 0.90660 0.92652 0.93120 1.42473 1.19123 1.63941 1.10532 1.19205 0.93614 1.26917 0.97068 0.91288 1.24695 0.98507 1.01471 0.96040 1.69640 1.38066 1.48087 1.02227 0.86251 0.84463 0.78775 0.77036 1.21823 1.21909 1.20884 0.93411 0.93134 0.92773 0.91992 0.90435 0.90394 0.89511 0.83977 0.82108 0.92320 0.90327 0.92390 0.93560 0.91989 0.90218 0.84642 0.90078 0.89425 0.93435 0.90690 0.78100 0.93523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.68 37.16 0.36 -1.70 16 2 C -0.11 -1.73 5.19 -26.73 -0.14 -1.87 16 3 C -0.10 -1.65 2.15 -90.28 -0.19 -1.84 16 4 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 5 C 0.12 1.99 5.04 -3.49 -0.02 1.97 16 6 N -0.59 -9.60 2.97 -173.50 -0.51 -10.12 16 7 C 0.56 9.29 7.31 -12.18 -0.09 9.20 16 8 O -0.54 -10.51 16.48 5.35 0.09 -10.42 16 9 C -0.03 -0.42 5.05 -104.69 -0.53 -0.94 16 10 C -0.20 -2.59 7.47 -39.02 -0.29 -2.89 16 11 C 0.15 1.71 11.16 -17.62 -0.20 1.51 16 12 N -0.53 -6.82 9.05 -12.48 -0.11 -6.93 16 13 C 0.40 5.02 7.37 -155.07 -1.14 3.88 16 14 N -0.62 -6.25 3.39 -189.69 -0.64 -6.89 16 15 C 0.10 0.71 9.40 59.84 0.56 1.27 16 16 C 0.10 0.80 10.47 59.85 0.63 1.43 16 17 C -0.19 -2.53 9.07 -38.79 -0.35 -2.88 16 18 C 0.10 1.62 5.14 -3.72 -0.02 1.60 16 19 C -0.15 -2.46 5.78 -26.61 -0.15 -2.61 16 20 C 0.18 3.25 2.53 -67.89 -0.17 3.08 16 21 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 22 N -0.72 -16.11 3.72 -53.39 -0.20 -16.31 16 23 C -0.24 -6.06 9.93 -15.06 -0.15 -6.21 16 24 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 25 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 26 N -0.93 -26.66 13.06 55.49 0.72 -25.93 16 27 Si 0.90 21.55 29.55 -169.99 -5.02 16.52 16 28 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 29 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 30 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.73 6.70 -51.93 -0.35 0.38 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.08 1.42 7.70 -51.93 -0.40 1.02 16 36 H 0.08 1.45 6.63 -51.93 -0.34 1.10 16 37 H 0.09 1.46 5.75 -51.93 -0.30 1.16 16 38 H 0.14 1.73 7.05 -52.49 -0.37 1.36 16 39 H 0.16 1.39 8.06 -52.49 -0.42 0.96 16 40 H 0.06 0.43 8.11 -51.93 -0.42 0.01 16 41 H 0.08 0.38 7.79 -51.93 -0.40 -0.02 16 42 H 0.06 0.42 7.73 -51.93 -0.40 0.02 16 43 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.06 0.35 7.92 -51.93 -0.41 -0.06 16 45 H 0.08 0.72 7.30 -51.93 -0.38 0.34 16 46 H 0.14 1.70 6.71 -52.49 -0.35 1.35 16 47 H 0.08 1.15 4.51 -51.93 -0.23 0.91 16 48 H 0.09 1.60 7.74 -51.93 -0.40 1.20 16 49 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 50 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 51 H 0.38 9.25 5.93 -40.82 -0.24 9.01 16 52 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 404.61 15.07 6.10 6.10 Total: -1.00 -30.89 404.61 -9.93 -40.82 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -8.36 Total: 10.56 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -1.99 Total: 2.61 kcal Atomic # 7 Polarization: -65.44 SS G_CDS: -0.74 Total: -66.18 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.42 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -30.89 -9.93 -40.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037928903.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.342 kcal (2) G-P(sol) polarization free energy of solvation -30.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds