Wall clock time and date at job start Wed Apr 1 2020 05:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47331 * 2 1 4 4 H 1.08996 * 109.52815 * 55.08221 * 3 2 1 5 5 C 1.53194 * 109.49901 * 295.00378 * 3 2 1 6 6 N 1.46926 * 108.77569 * 185.41303 * 5 3 2 7 7 C 1.34783 * 120.63051 * 233.62615 * 6 5 3 8 8 O 1.21513 * 119.99841 * 355.81122 * 7 6 5 9 9 C 1.48161 * 120.00073 * 175.80754 * 7 6 5 10 10 C 1.40017 * 120.88240 * 224.96858 * 9 7 6 11 11 C 1.37947 * 119.17521 * 179.70293 * 10 9 7 12 12 N 1.31916 * 120.99974 * 0.58624 * 11 10 9 13 13 C 1.32318 * 121.94737 * 359.70755 * 12 11 10 14 14 N 1.39021 * 119.64131 * 180.02562 * 13 12 11 15 15 C 1.46507 * 119.99565 * 191.82238 * 14 13 12 16 16 C 1.46501 * 120.00351 * 11.82365 * 14 13 12 17 17 C 1.39119 * 120.70742 * 359.97438 * 13 12 11 18 18 C 1.46928 * 118.74206 * 53.61115 * 6 5 3 19 19 C 1.53197 * 108.76840 * 306.38854 * 18 6 5 20 20 C 1.53044 * 109.49799 * 175.16397 * 3 2 1 21 21 H 1.09000 * 109.44864 * 301.32876 * 20 3 2 22 22 N 1.46494 * 109.45946 * 61.30031 * 20 3 2 23 23 C 1.36944 * 119.99800 * 205.06963 * 22 20 3 24 24 H 1.07995 * 119.99641 * 359.97438 * 23 22 20 25 25 C 1.38811 * 119.99926 * 179.97438 * 23 22 20 26 26 N 1.31622 * 120.00084 * 179.97438 * 25 23 22 27 27 Si 1.86802 * 120.00038 * 359.97438 * 25 23 22 28 28 H 1.48507 * 109.47055 * 90.00312 * 27 25 23 29 29 H 1.48503 * 109.47272 * 209.99966 * 27 25 23 30 30 H 1.48493 * 109.47225 * 330.00243 * 27 25 23 31 31 H 1.09003 * 109.46938 * 299.99913 * 1 2 3 32 32 H 1.08998 * 109.47361 * 59.99786 * 1 2 3 33 33 H 1.08996 * 109.47289 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.46938 * 240.00087 * 2 1 3 35 35 H 1.08998 * 109.47361 * 120.00214 * 2 1 3 36 36 H 1.08997 * 109.58681 * 65.62183 * 5 3 2 37 37 H 1.08997 * 109.58584 * 305.19711 * 5 3 2 38 38 H 1.08004 * 120.41161 * 359.97438 * 10 9 7 39 39 H 1.08007 * 119.49867 * 180.27430 * 11 10 9 40 40 H 1.08996 * 109.46871 * 356.76446 * 15 14 13 41 41 H 1.09000 * 109.47163 * 116.76434 * 15 14 13 42 42 H 1.09000 * 109.46658 * 236.76356 * 15 14 13 43 43 H 1.08999 * 109.47104 * 90.00118 * 16 14 13 44 44 H 1.09002 * 109.46756 * 209.99694 * 16 14 13 45 45 H 1.08994 * 109.47074 * 330.00031 * 16 14 13 46 46 H 1.08007 * 120.53264 * 180.02562 * 17 13 12 47 47 H 1.08996 * 109.58955 * 66.17332 * 18 6 5 48 48 H 1.08991 * 109.59011 * 186.60658 * 18 6 5 49 49 H 1.09008 * 109.49571 * 174.58322 * 19 18 6 50 50 H 1.08997 * 109.50187 * 294.65011 * 19 18 6 51 51 H 0.97003 * 120.00638 * 25.06545 * 22 20 3 52 52 H 0.96998 * 119.99831 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6071 1.9820 0.8423 5 6 1.6350 2.1280 -1.3087 6 7 2.2415 3.4656 -1.3493 7 6 1.4815 4.5581 -1.5628 8 8 0.2958 4.4365 -1.7996 9 6 2.0916 5.9071 -1.5087 10 6 1.4614 6.9541 -0.8251 11 6 2.0639 8.1945 -0.7920 12 7 3.2137 8.4079 -1.4025 13 6 3.8426 7.4509 -2.0654 14 7 5.0527 7.7287 -2.6909 15 6 5.6270 6.7668 -3.6350 16 6 5.7535 8.9833 -2.4060 17 6 3.3065 6.1695 -2.1422 18 6 3.6922 3.5899 -1.1523 19 6 4.0740 2.8879 0.1548 20 6 3.5656 1.4448 0.1216 21 1 3.8572 0.9359 1.0403 22 7 4.1479 0.7485 -1.0282 23 6 5.3854 0.1714 -0.9243 24 1 5.9322 0.2300 0.0052 25 6 5.9370 -0.4889 -2.0136 26 7 7.1267 -1.0432 -1.9139 27 14 4.9909 -0.5909 -3.6210 28 1 5.3328 0.5775 -4.4716 29 1 5.3548 -1.8434 -4.3311 30 1 3.5331 -0.5878 -3.3385 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.8932 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 0.5496 2.2174 -1.3538 37 1 1.9907 1.5398 -2.1546 38 1 0.5174 6.7912 -0.3262 39 1 1.5846 9.0047 -0.2625 40 1 4.9988 5.8770 -3.6743 41 1 5.6803 7.2179 -4.6259 42 1 6.6290 6.4901 -3.3073 43 1 6.4307 8.8381 -1.5644 44 1 6.3244 9.2878 -3.2833 45 1 5.0270 9.7572 -2.1586 46 1 3.8224 5.3903 -2.6836 47 1 4.2156 3.1208 -1.9854 48 1 3.9641 4.6437 -1.0940 49 1 5.1585 2.8890 0.2649 50 1 3.6224 3.4141 0.9957 51 1 3.6569 0.6961 -1.8632 52 1 7.5119 -1.5049 -2.6750 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037928906.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:55:52 Heat of formation + Delta-G solvation = 40.623110 kcal Electronic energy + Delta-G solvation = -32147.539907 eV Core-core repulsion = 28148.173339 eV Total energy + Delta-G solvation = -3999.366568 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.99231 -39.73176 -38.00447 -36.58501 -34.78318 -33.92399 -32.71178 -31.80459 -30.64909 -29.88714 -28.90630 -28.42322 -26.01998 -25.31448 -24.00646 -23.74244 -23.05549 -22.07495 -20.89846 -19.89690 -18.62016 -17.98579 -17.50430 -17.00090 -16.38034 -15.96077 -15.77507 -15.52019 -15.12502 -14.78931 -14.58756 -14.33503 -14.26052 -14.02610 -13.69404 -13.53248 -13.41580 -13.19717 -13.16766 -12.73292 -12.52239 -12.50702 -12.39485 -12.34506 -11.96547 -11.73532 -11.68702 -11.31379 -11.14659 -10.98997 -10.89913 -10.45857 -10.38033 -10.30888 -10.25222 -10.10228 -9.88800 -9.79301 -9.60667 -9.38421 -8.98770 -8.45184 -7.73202 -7.33393 -5.83849 -3.19237 0.81377 1.16370 2.65259 2.76717 3.04268 3.28601 3.31774 3.39089 3.74343 4.23063 4.38773 4.51166 4.75883 4.88623 4.94133 4.97494 5.05654 5.08586 5.16433 5.18367 5.18903 5.28873 5.37270 5.43218 5.46397 5.48431 5.52637 5.55324 5.57880 5.61028 5.63733 5.69309 5.73981 5.84065 5.98278 6.01866 6.05197 6.15385 6.23320 6.28290 6.29945 6.40481 6.46657 6.51865 6.62664 6.69007 6.72474 6.83736 7.13373 7.46291 7.92636 7.92803 8.12737 8.35215 9.13342 9.85919 10.05771 11.34562 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009838 B = 0.004073 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2845.476745 B = 6872.949413 C = 8768.411574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.107 4.107 4 H 0.073 0.927 5 C 0.117 3.883 6 N -0.593 5.593 7 C 0.557 3.443 8 O -0.539 6.539 9 C -0.031 4.031 10 C -0.188 4.188 11 C 0.147 3.853 12 N -0.533 5.533 13 C 0.401 3.599 14 N -0.618 5.618 15 C 0.089 3.911 16 C 0.099 3.901 17 C -0.212 4.212 18 C 0.096 3.904 19 C -0.149 4.149 20 C 0.184 3.816 21 H 0.061 0.939 22 N -0.743 5.743 23 C -0.240 4.240 24 H 0.091 0.909 25 C 0.008 3.992 26 N -0.933 5.933 27 Si 0.876 3.124 28 H -0.285 1.285 29 H -0.291 1.291 30 H -0.278 1.278 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.068 0.932 38 H 0.138 0.862 39 H 0.161 0.839 40 H 0.079 0.921 41 H 0.059 0.941 42 H 0.066 0.934 43 H 0.047 0.953 44 H 0.062 0.938 45 H 0.080 0.920 46 H 0.145 0.855 47 H 0.081 0.919 48 H 0.088 0.912 49 H 0.080 0.920 50 H 0.052 0.948 51 H 0.360 0.640 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.969 16.875 1.459 18.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.149 4.149 3 C -0.127 4.127 4 H 0.091 0.909 5 C -0.005 4.005 6 N -0.324 5.324 7 C 0.344 3.656 8 O -0.417 6.417 9 C -0.042 4.042 10 C -0.211 4.211 11 C -0.010 4.010 12 N -0.251 5.251 13 C 0.167 3.833 14 N -0.333 5.333 15 C -0.054 4.054 16 C -0.044 4.044 17 C -0.237 4.237 18 C -0.026 4.026 19 C -0.190 4.190 20 C 0.075 3.925 21 H 0.079 0.921 22 N -0.387 5.387 23 C -0.370 4.370 24 H 0.108 0.892 25 C -0.188 4.188 26 N -0.580 5.580 27 Si 0.707 3.293 28 H -0.212 1.212 29 H -0.217 1.217 30 H -0.204 1.204 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.086 0.914 38 H 0.156 0.844 39 H 0.178 0.822 40 H 0.097 0.903 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.066 0.934 44 H 0.081 0.919 45 H 0.098 0.902 46 H 0.162 0.838 47 H 0.099 0.901 48 H 0.106 0.894 49 H 0.098 0.902 50 H 0.071 0.929 51 H 0.194 0.806 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.796 17.533 1.338 19.235 hybrid contribution -0.702 -1.034 -1.321 1.818 sum -8.498 16.500 0.017 18.560 Atomic orbital electron populations 1.21860 0.96590 1.01225 1.01486 1.21432 0.94514 0.95590 1.03383 1.21809 0.97504 0.96270 0.97071 0.90905 1.21741 0.99149 0.81325 0.98252 1.48084 1.08913 1.06274 1.69151 1.18293 0.86038 0.83970 0.77287 1.90760 1.15220 1.86484 1.49247 1.20034 0.93634 0.94196 0.96361 1.21827 1.02201 0.93239 1.03835 1.22350 0.89427 0.95655 0.93592 1.67003 1.11022 1.33618 1.13420 1.18165 0.86524 0.88367 0.90217 1.46172 1.19562 1.21220 1.46301 1.21831 0.99297 0.92622 0.91693 1.21551 0.96843 0.85665 1.00301 1.21774 0.97707 0.97019 1.07186 1.22239 0.78703 1.01650 1.00033 1.22496 1.02320 0.98659 0.95476 1.20195 0.89377 0.90727 0.92241 0.92124 1.42840 1.19658 1.65807 1.10399 1.19056 0.91852 1.26883 0.99226 0.89156 1.24620 0.96420 1.00266 0.97467 1.69688 1.16327 1.41217 1.30810 0.86694 0.79682 0.77494 0.85456 1.21205 1.21705 1.20383 0.93093 0.92852 0.93005 0.91064 0.91454 0.89104 0.91361 0.84409 0.82193 0.90257 0.92271 0.91549 0.93406 0.91888 0.90176 0.83775 0.90122 0.89430 0.90183 0.92895 0.80634 0.93064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.67 37.15 0.36 -1.56 16 2 C -0.11 -1.63 5.19 -26.74 -0.14 -1.77 16 3 C -0.11 -1.60 2.14 -90.50 -0.19 -1.79 16 4 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 5 C 0.12 1.83 5.01 -3.71 -0.02 1.81 16 6 N -0.59 -9.08 2.97 -173.76 -0.52 -9.60 16 7 C 0.56 8.78 7.35 -12.18 -0.09 8.69 16 8 O -0.54 -9.88 16.44 5.35 0.09 -9.79 16 9 C -0.03 -0.43 5.22 -104.69 -0.55 -0.97 16 10 C -0.19 -2.24 9.81 -39.02 -0.38 -2.63 16 11 C 0.15 1.57 11.16 -17.62 -0.20 1.38 16 12 N -0.53 -6.55 9.05 -12.48 -0.11 -6.66 16 13 C 0.40 5.00 7.32 -155.08 -1.14 3.86 16 14 N -0.62 -6.59 3.39 -189.69 -0.64 -7.24 16 15 C 0.09 0.79 10.61 59.85 0.63 1.42 16 16 C 0.10 0.86 10.60 59.85 0.63 1.49 16 17 C -0.21 -2.70 6.62 -38.79 -0.26 -2.96 16 18 C 0.10 1.42 5.00 -3.71 -0.02 1.41 16 19 C -0.15 -2.33 5.78 -26.61 -0.15 -2.48 16 20 C 0.18 3.20 2.53 -67.89 -0.17 3.03 16 21 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 22 N -0.74 -15.67 3.52 -53.38 -0.19 -15.86 16 23 C -0.24 -6.21 10.41 -15.06 -0.16 -6.36 16 24 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 25 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 26 N -0.93 -27.99 13.97 55.49 0.78 -27.21 16 27 Si 0.88 21.05 27.73 -169.99 -4.71 16.34 16 28 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 29 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 30 H -0.28 -6.29 6.52 56.52 0.37 -5.92 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.67 6.70 -51.93 -0.35 0.32 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.07 1.19 7.69 -51.93 -0.40 0.79 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.09 1.42 5.75 -51.93 -0.30 1.12 16 37 H 0.07 1.15 6.64 -51.93 -0.34 0.80 16 38 H 0.14 1.50 8.06 -52.48 -0.42 1.08 16 39 H 0.16 1.17 8.06 -52.48 -0.42 0.75 16 40 H 0.08 0.73 5.36 -51.93 -0.28 0.46 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.42 8.07 -51.93 -0.42 0.00 16 45 H 0.08 0.74 7.23 -51.93 -0.38 0.36 16 46 H 0.14 1.76 4.41 -52.48 -0.23 1.53 16 47 H 0.08 1.33 7.74 -51.93 -0.40 0.93 16 48 H 0.09 1.19 4.19 -51.93 -0.22 0.97 16 49 H 0.08 1.35 8.14 -51.92 -0.42 0.93 16 50 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 51 H 0.36 7.65 3.81 -40.82 -0.16 7.50 16 52 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 399.15 15.07 6.02 6.02 Total: -1.00 -31.65 399.15 -9.35 -41.00 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -8.13 Total: 10.32 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -1.93 Total: 2.68 kcal Atomic # 7 Polarization: -65.88 SS G_CDS: -0.69 Total: -66.57 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.09 Total: -9.79 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.71 Total: 16.34 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.65 -9.35 -41.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037928906.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.625 kcal (2) G-P(sol) polarization free energy of solvation -31.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds