Wall clock time and date at job start Wed Apr 1 2020 05:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46952 * 2 1 4 4 H 1.08990 * 109.52505 * 54.92282 * 3 2 1 5 5 C 1.53192 * 109.49878 * 294.83543 * 3 2 1 6 6 N 1.46923 * 108.77806 * 185.41695 * 5 3 2 7 7 C 1.34779 * 120.62817 * 233.59022 * 6 5 3 8 8 O 1.21508 * 120.00229 * 356.18108 * 7 6 5 9 9 C 1.48164 * 119.99784 * 176.18005 * 7 6 5 10 10 C 1.40017 * 120.88315 * 50.05276 * 9 7 6 11 11 C 1.37952 * 119.17706 * 180.02562 * 10 9 7 12 12 N 1.31912 * 121.00047 * 0.02562 * 11 10 9 13 13 C 1.32319 * 121.94673 * 0.02562 * 12 11 10 14 14 N 1.39027 * 119.64346 * 180.02562 * 13 12 11 15 15 C 1.46504 * 120.00017 * 184.99780 * 14 13 12 16 16 C 1.46493 * 120.00226 * 4.99779 * 14 13 12 17 17 C 1.39123 * 120.70988 * 359.71398 * 13 12 11 18 18 C 1.46921 * 118.73852 * 53.60777 * 6 5 3 19 19 C 1.53194 * 108.77868 * 306.39335 * 18 6 5 20 20 C 1.53042 * 109.49488 * 175.00228 * 3 2 1 21 21 H 1.09006 * 109.46290 * 61.30715 * 20 3 2 22 22 N 1.46502 * 109.45997 * 301.33497 * 20 3 2 23 23 C 1.36932 * 120.00122 * 154.99991 * 22 20 3 24 24 H 1.08004 * 120.00064 * 0.02562 * 23 22 20 25 25 C 1.38813 * 120.00279 * 179.97438 * 23 22 20 26 26 N 1.31613 * 120.00398 * 179.97438 * 25 23 22 27 27 Si 1.86796 * 119.99814 * 0.02562 * 25 23 22 28 28 H 1.48503 * 109.47196 * 269.99940 * 27 25 23 29 29 H 1.48500 * 109.47295 * 29.99522 * 27 25 23 30 30 H 1.48501 * 109.47408 * 149.99446 * 27 25 23 31 31 H 1.09003 * 109.47223 * 60.00326 * 1 2 3 32 32 H 1.09006 * 109.47018 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47073 * 299.99883 * 1 2 3 34 34 H 1.09007 * 109.46725 * 240.00097 * 2 1 3 35 35 H 1.08996 * 109.47238 * 120.00359 * 2 1 3 36 36 H 1.08999 * 109.58742 * 305.20386 * 5 3 2 37 37 H 1.09005 * 109.58556 * 65.62551 * 5 3 2 38 38 H 1.08005 * 120.40884 * 359.97438 * 10 9 7 39 39 H 1.08001 * 119.49385 * 180.02562 * 11 10 9 40 40 H 1.08995 * 109.46910 * 89.99540 * 15 14 13 41 41 H 1.08991 * 109.47118 * 210.00244 * 15 14 13 42 42 H 1.09009 * 109.47018 * 330.00013 * 15 14 13 43 43 H 1.09000 * 109.47382 * 359.97438 * 16 14 13 44 44 H 1.09004 * 109.47252 * 119.99754 * 16 14 13 45 45 H 1.09001 * 109.46995 * 240.00043 * 16 14 13 46 46 H 1.08001 * 120.53294 * 180.31099 * 17 13 12 47 47 H 1.09004 * 109.59041 * 66.18218 * 18 6 5 48 48 H 1.09002 * 109.59093 * 186.46414 * 18 6 5 49 49 H 1.08996 * 109.49957 * 294.68420 * 19 18 6 50 50 H 1.09000 * 109.49994 * 174.58156 * 19 18 6 51 51 H 0.97003 * 119.99624 * 335.00571 * 22 20 3 52 52 H 0.97001 * 120.00298 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6048 1.9827 0.8407 5 6 1.6385 2.1268 -1.3105 6 7 2.2451 3.4643 -1.3508 7 6 1.4857 4.5564 -1.5682 8 8 0.2996 4.4349 -1.8021 9 6 2.0973 5.9051 -1.5220 10 6 3.2629 6.1908 -2.2433 11 6 3.8027 7.4584 -2.1745 12 7 3.2378 8.3985 -1.4415 13 6 2.1368 8.1745 -0.7426 14 7 1.5815 9.2006 0.0134 15 6 0.4275 8.9335 0.8754 16 6 2.1504 10.5490 -0.0520 17 6 1.5254 6.9250 -0.7613 18 6 3.6952 3.5887 -1.1499 19 6 4.0737 2.8881 0.1588 20 6 3.5652 1.4450 0.1257 21 1 4.0008 0.9262 -0.7283 22 7 3.9542 0.7620 1.3620 23 6 5.1922 0.1863 1.4658 24 1 5.8821 0.2360 0.6363 25 6 5.5610 -0.4604 2.6374 26 7 6.7508 -1.0143 2.7370 27 14 4.3680 -0.5459 4.0723 28 1 4.5680 0.6328 4.9532 29 1 2.9748 -0.5488 3.5582 30 1 4.6127 -1.7894 4.8461 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8899 34 1 1.8933 -0.5139 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 1.9965 1.5377 -2.1549 37 1 0.5532 2.2160 -1.3586 38 1 3.7339 5.4279 -2.8455 39 1 4.7014 7.6845 -2.7291 40 1 0.7743 8.6377 1.8655 41 1 -0.1809 9.8340 0.9575 42 1 -0.1696 8.1296 0.4445 43 1 2.9961 10.5537 -0.7396 44 1 1.3910 11.2470 -0.4047 45 1 2.4875 10.8496 0.9401 46 1 0.6240 6.7467 -0.1937 47 1 4.2209 3.1189 -1.9812 48 1 3.9674 4.6428 -1.0945 49 1 3.6193 3.4147 0.9980 50 1 5.1578 2.8893 0.2718 51 1 3.3346 0.7176 2.1071 52 1 7.0083 -1.4665 3.5556 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037928907.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:55:57 Heat of formation + Delta-G solvation = 34.293780 kcal Electronic energy + Delta-G solvation = -31327.410055 eV Core-core repulsion = 27327.769027 eV Total energy + Delta-G solvation = -3999.641028 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.00192 -39.77305 -37.92960 -36.75116 -34.93668 -33.97052 -32.76663 -31.80637 -30.75835 -29.93509 -29.03984 -28.49253 -25.98912 -25.39564 -24.14241 -23.58885 -22.69245 -21.86228 -20.86555 -20.12661 -19.42684 -17.89479 -17.48526 -17.05705 -16.45307 -16.00617 -15.85650 -15.59509 -15.16545 -14.90980 -14.57815 -14.44278 -14.22314 -13.95368 -13.77426 -13.59202 -13.39599 -13.28656 -12.94611 -12.85096 -12.73563 -12.49537 -12.40612 -12.38140 -12.05655 -11.90841 -11.78551 -11.45120 -11.06109 -11.05469 -10.83223 -10.48801 -10.37238 -10.33953 -10.23711 -10.16477 -9.90955 -9.77572 -9.60823 -9.49869 -8.95101 -8.61181 -7.82548 -7.30253 -5.80846 -3.16272 0.79518 1.09020 2.49049 2.70153 2.96010 3.34048 3.37412 3.42831 3.66783 4.18675 4.30634 4.55505 4.69307 4.81213 4.83755 4.92322 4.98732 5.00501 5.03768 5.09986 5.14876 5.21183 5.28654 5.33751 5.34682 5.45318 5.47587 5.49540 5.51663 5.57378 5.59382 5.62971 5.75001 5.89883 5.95913 5.98135 6.01272 6.06971 6.19148 6.23305 6.25676 6.31563 6.42217 6.51859 6.59874 6.68329 6.76783 6.91658 7.03680 7.34333 7.86395 7.94671 8.03083 8.38259 9.16412 9.89253 10.09133 11.37446 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011630 B = 0.002912 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.899607 B = 9611.754180 C =10375.616692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.108 4.108 4 H 0.069 0.931 5 C 0.120 3.880 6 N -0.595 5.595 7 C 0.559 3.441 8 O -0.538 6.538 9 C -0.030 4.030 10 C -0.209 4.209 11 C 0.150 3.850 12 N -0.535 5.535 13 C 0.403 3.597 14 N -0.617 5.617 15 C 0.092 3.908 16 C 0.094 3.906 17 C -0.192 4.192 18 C 0.094 3.906 19 C -0.151 4.151 20 C 0.188 3.812 21 H 0.058 0.942 22 N -0.745 5.745 23 C -0.242 4.242 24 H 0.090 0.910 25 C 0.006 3.994 26 N -0.933 5.933 27 Si 0.881 3.119 28 H -0.285 1.285 29 H -0.277 1.277 30 H -0.291 1.291 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.140 0.860 39 H 0.162 0.838 40 H 0.054 0.946 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.091 0.909 44 H 0.051 0.949 45 H 0.052 0.948 46 H 0.139 0.861 47 H 0.072 0.928 48 H 0.090 0.910 49 H 0.058 0.942 50 H 0.082 0.918 51 H 0.361 0.639 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.245 18.708 -9.058 23.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.128 4.128 4 H 0.087 0.913 5 C -0.002 4.002 6 N -0.326 5.326 7 C 0.346 3.654 8 O -0.416 6.416 9 C -0.041 4.041 10 C -0.232 4.232 11 C -0.007 4.007 12 N -0.253 5.253 13 C 0.168 3.832 14 N -0.332 5.332 15 C -0.051 4.051 16 C -0.049 4.049 17 C -0.218 4.218 18 C -0.028 4.028 19 C -0.192 4.192 20 C 0.078 3.922 21 H 0.076 0.924 22 N -0.386 5.386 23 C -0.372 4.372 24 H 0.108 0.892 25 C -0.190 4.190 26 N -0.581 5.581 27 Si 0.712 3.288 28 H -0.212 1.212 29 H -0.203 1.203 30 H -0.218 1.218 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.110 0.890 38 H 0.158 0.842 39 H 0.179 0.821 40 H 0.073 0.927 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.110 0.890 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.156 0.844 47 H 0.091 0.909 48 H 0.108 0.892 49 H 0.076 0.924 50 H 0.100 0.900 51 H 0.194 0.806 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.343 19.478 -9.068 24.296 hybrid contribution -0.971 -0.921 1.272 1.846 sum -12.314 18.557 -7.796 23.596 Atomic orbital electron populations 1.21857 0.96635 1.01219 1.01419 1.21465 0.94543 0.95601 1.03511 1.21834 0.97728 0.96333 0.96942 0.91283 1.21785 0.99501 0.81109 0.97842 1.48085 1.08857 1.06421 1.69265 1.18289 0.86016 0.83999 0.77063 1.90767 1.15170 1.86493 1.49174 1.19993 0.94451 0.93638 0.95979 1.22014 0.97335 0.99369 1.04478 1.22358 0.97562 0.87748 0.93031 1.66970 1.10514 1.36174 1.11626 1.18152 0.89035 0.86695 0.89291 1.46172 1.33069 1.07719 1.46204 1.21747 0.87314 1.02402 0.93685 1.21630 0.99529 0.81507 1.02202 1.21382 1.02854 0.92172 1.05380 1.22241 0.78933 1.02380 0.99289 1.22643 1.02704 0.98633 0.95231 1.20171 0.90602 0.90698 0.90682 0.92449 1.42771 1.16458 1.66312 1.13108 1.19043 0.90367 1.27313 1.00431 0.89179 1.24649 0.96395 1.00276 0.97667 1.69690 1.19316 1.41575 1.27520 0.86603 0.81168 0.77318 0.83728 1.21208 1.20276 1.21793 0.92920 0.93005 0.93115 0.91867 0.90371 0.91110 0.88981 0.84173 0.82060 0.92702 0.90874 0.90880 0.89023 0.93027 0.92958 0.84381 0.90930 0.89198 0.92366 0.89959 0.80632 0.93059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.67 37.16 0.36 -1.59 16 2 C -0.11 -1.68 5.31 -26.73 -0.14 -1.82 16 3 C -0.11 -1.64 1.92 -90.50 -0.17 -1.81 16 4 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 5 C 0.12 1.63 5.32 -3.71 -0.02 1.61 16 6 N -0.59 -8.02 2.97 -173.76 -0.52 -8.54 16 7 C 0.56 8.09 7.30 -12.18 -0.09 8.00 16 8 O -0.54 -9.29 16.48 5.36 0.09 -9.20 16 9 C -0.03 -0.37 5.04 -104.69 -0.53 -0.90 16 10 C -0.21 -2.17 7.47 -39.02 -0.29 -2.47 16 11 C 0.15 1.48 11.16 -17.62 -0.20 1.28 16 12 N -0.54 -6.21 8.82 -12.48 -0.11 -6.32 16 13 C 0.40 4.74 7.37 -155.07 -1.14 3.59 16 14 N -0.62 -5.98 3.39 -189.69 -0.64 -6.63 16 15 C 0.09 0.66 10.33 59.85 0.62 1.28 16 16 C 0.09 0.73 10.71 59.84 0.64 1.37 16 17 C -0.19 -2.36 9.01 -38.78 -0.35 -2.71 16 18 C 0.09 1.18 5.42 -3.71 -0.02 1.16 16 19 C -0.15 -2.39 5.66 -26.61 -0.15 -2.54 16 20 C 0.19 3.31 2.19 -67.89 -0.15 3.16 16 21 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 22 N -0.74 -16.45 4.13 -53.38 -0.22 -16.67 16 23 C -0.24 -6.45 10.41 -15.06 -0.16 -6.61 16 24 H 0.09 2.58 8.06 -52.48 -0.42 2.15 16 25 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 26 N -0.93 -28.61 13.97 55.49 0.78 -27.84 16 27 Si 0.88 21.65 27.73 -169.99 -4.71 16.93 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 29 H -0.28 -6.37 6.52 56.52 0.37 -6.00 16 30 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 31 H 0.05 0.62 6.70 -51.93 -0.35 0.27 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.08 1.36 7.22 -51.93 -0.37 0.99 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.09 1.30 5.75 -51.93 -0.30 1.00 16 38 H 0.14 1.21 7.07 -52.48 -0.37 0.84 16 39 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.07 0.38 8.07 -51.93 -0.42 -0.04 16 42 H 0.07 0.53 5.96 -51.92 -0.31 0.22 16 43 H 0.09 0.79 6.82 -51.93 -0.35 0.44 16 44 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.14 1.61 6.02 -52.49 -0.32 1.29 16 47 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.09 1.02 4.51 -51.93 -0.23 0.79 16 49 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 50 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 51 H 0.36 8.04 5.37 -40.82 -0.22 7.82 16 52 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 403.60 15.07 6.08 6.08 Total: -1.00 -33.10 403.60 -9.47 -42.57 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -8.33 Total: 8.53 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -1.89 Total: 1.08 kcal Atomic # 7 Polarization: -65.28 SS G_CDS: -0.72 Total: -66.00 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.09 Total: -9.20 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.71 Total: 16.93 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.10 -9.47 -42.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037928907.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.865 kcal (2) G-P(sol) polarization free energy of solvation -33.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds