Wall clock time and date at job start Wed Apr 1 2020 05:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47166 * 2 1 4 4 H 1.08998 * 109.49915 * 305.06065 * 3 2 1 5 5 C 1.53188 * 109.52321 * 65.14599 * 3 2 1 6 6 N 1.46936 * 108.77181 * 174.60192 * 5 3 2 7 7 C 1.34771 * 120.62630 * 126.43553 * 6 5 3 8 8 O 1.21514 * 120.00584 * 354.17473 * 7 6 5 9 9 C 1.48169 * 120.00128 * 174.18563 * 7 6 5 10 10 C 1.40014 * 120.87419 * 320.01248 * 9 7 6 11 11 C 1.37951 * 119.17463 * 179.79589 * 10 9 7 12 12 N 1.31920 * 121.00100 * 0.49109 * 11 10 9 13 13 C 1.32322 * 121.94118 * 359.73662 * 12 11 10 14 14 N 1.39024 * 119.64242 * 179.97438 * 13 12 11 15 15 C 1.46502 * 120.00171 * 185.02320 * 14 13 12 16 16 C 1.46502 * 120.00110 * 5.02484 * 14 13 12 17 17 C 1.39119 * 120.71114 * 0.02562 * 13 12 11 18 18 C 1.46927 * 118.76687 * 306.41011 * 6 5 3 19 19 C 1.53191 * 108.77164 * 53.55626 * 18 6 5 20 20 C 1.53039 * 109.34164 * 305.41640 * 19 18 6 21 21 H 1.09003 * 109.45966 * 301.34019 * 20 19 18 22 22 N 1.46501 * 109.46157 * 181.37051 * 20 19 18 23 23 C 1.36933 * 120.00251 * 84.99938 * 22 20 19 24 24 H 1.08008 * 120.00027 * 359.97438 * 23 22 20 25 25 C 1.38815 * 120.00313 * 180.02562 * 23 22 20 26 26 N 1.31610 * 119.99968 * 180.02562 * 25 23 22 27 27 Si 1.86797 * 119.99524 * 359.97438 * 25 23 22 28 28 H 1.48500 * 109.47367 * 90.00347 * 27 25 23 29 29 H 1.48501 * 109.46946 * 210.00013 * 27 25 23 30 30 H 1.48503 * 109.47505 * 330.00283 * 27 25 23 31 31 H 1.08996 * 109.47005 * 299.99916 * 1 2 3 32 32 H 1.08997 * 109.47160 * 60.00252 * 1 2 3 33 33 H 1.08998 * 109.47090 * 180.02562 * 1 2 3 34 34 H 1.09006 * 109.47392 * 239.99712 * 2 1 3 35 35 H 1.08997 * 109.47167 * 120.00303 * 2 1 3 36 36 H 1.08992 * 109.58799 * 294.38503 * 5 3 2 37 37 H 1.08997 * 109.59178 * 54.81665 * 5 3 2 38 38 H 1.08005 * 120.41810 * 0.02562 * 10 9 7 39 39 H 1.08006 * 119.50133 * 180.20232 * 11 10 9 40 40 H 1.08999 * 109.47005 * 89.99731 * 15 14 13 41 41 H 1.09001 * 109.47080 * 210.00246 * 15 14 13 42 42 H 1.09000 * 109.46615 * 330.00411 * 15 14 13 43 43 H 1.08996 * 109.47194 * 59.99411 * 16 14 13 44 44 H 1.08997 * 109.47035 * 180.02562 * 16 14 13 45 45 H 1.09006 * 109.46954 * 299.99836 * 16 14 13 46 46 H 1.08005 * 120.53460 * 179.97438 * 17 13 12 47 47 H 1.09002 * 109.56190 * 293.78863 * 18 6 5 48 48 H 1.09002 * 109.61673 * 173.35753 * 18 6 5 49 49 H 1.09001 * 109.50359 * 185.44579 * 19 18 6 50 50 H 1.09005 * 109.49959 * 65.38294 * 19 18 6 51 51 H 0.97001 * 119.99689 * 264.99494 * 22 20 19 52 52 H 0.97004 * 120.00128 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9822 -0.8410 5 6 1.6385 2.1274 1.3101 6 7 2.2451 3.4651 1.3495 7 6 1.4858 4.5572 1.5667 8 8 0.2765 4.4544 1.6268 9 6 2.1255 5.8834 1.7321 10 6 3.3122 6.0227 2.4619 11 6 3.8800 7.2734 2.5902 12 7 3.3167 8.3344 2.0451 13 6 2.1932 8.2517 1.3509 14 7 1.6407 9.4011 0.7975 15 6 0.3421 9.3378 0.1222 16 6 2.3570 10.6758 0.8894 17 6 1.5584 7.0271 1.1699 18 6 3.6951 3.5902 1.1482 19 6 4.0736 2.8881 -0.1597 20 6 3.5653 1.4450 -0.1258 21 1 4.0007 0.9266 0.7285 22 7 3.9543 0.7613 -1.3617 23 6 5.1918 0.1843 -1.4646 24 1 5.8814 0.2336 -0.6348 25 6 5.5607 -0.4631 -2.6359 26 7 6.7499 -1.0180 -2.7345 27 14 4.3683 -0.5477 -4.0713 28 1 4.5700 0.6305 -4.9525 29 1 4.6124 -1.7917 -4.8448 30 1 2.9748 -0.5492 -3.5581 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 0.5533 2.2168 1.3581 37 1 1.9965 1.5389 2.1548 38 1 3.7794 5.1611 2.9158 39 1 4.7972 7.3863 3.1492 40 1 -0.4526 9.5234 0.8448 41 1 0.3035 10.0933 -0.6626 42 1 0.2094 8.3495 -0.3179 43 1 3.3249 10.5850 0.3964 44 1 1.7728 11.4568 0.4030 45 1 2.5062 10.9338 1.9380 46 1 0.6413 6.9629 0.6031 47 1 4.2209 3.1213 1.9800 48 1 3.9668 4.6442 1.0890 49 1 5.1578 2.8893 -0.2728 50 1 3.6197 3.4141 -0.9996 51 1 3.3351 0.7173 -2.1071 52 1 7.0076 -1.4707 -3.5529 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037928909.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:56:02 Heat of formation + Delta-G solvation = 33.712400 kcal Electronic energy + Delta-G solvation = -31248.267094 eV Core-core repulsion = 27248.600856 eV Total energy + Delta-G solvation = -3999.666239 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.00269 -39.75983 -37.91478 -36.77213 -34.95143 -33.96591 -32.74066 -31.80667 -30.76662 -29.93843 -29.02202 -28.49174 -25.98929 -25.41796 -24.13884 -23.57366 -22.68695 -21.86180 -20.86145 -20.12676 -19.44337 -17.87728 -17.46370 -17.07294 -16.38170 -15.97104 -15.83750 -15.60599 -15.20571 -14.90096 -14.57227 -14.43008 -14.20851 -13.92158 -13.74540 -13.56199 -13.38351 -13.30586 -12.94274 -12.92888 -12.73506 -12.59203 -12.48693 -12.36433 -12.02224 -11.90185 -11.75602 -11.44127 -11.05593 -11.05040 -10.82048 -10.47333 -10.36322 -10.32410 -10.23047 -10.09963 -9.92684 -9.77216 -9.60371 -9.51652 -8.94944 -8.60094 -7.82863 -7.29856 -5.80572 -3.15928 0.75124 1.09088 2.53077 2.73433 2.95787 3.34499 3.37961 3.43235 3.70030 4.18996 4.32278 4.55880 4.64161 4.80547 4.83870 4.92514 4.95699 5.00712 5.04511 5.06964 5.13496 5.21352 5.32348 5.34548 5.34710 5.45694 5.47736 5.50497 5.51341 5.55573 5.59403 5.60451 5.75976 5.90193 5.95799 5.98554 6.01851 6.07688 6.18382 6.23375 6.26306 6.32133 6.43548 6.52916 6.58187 6.69034 6.77447 6.92191 7.03604 7.35368 7.87959 7.94966 8.04462 8.38559 9.16753 9.89634 10.09551 11.37718 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012574 B = 0.002784 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.301503 B =10054.680265 C =10818.351076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.108 4.108 4 H 0.069 0.931 5 C 0.120 3.880 6 N -0.596 5.596 7 C 0.559 3.441 8 O -0.538 6.538 9 C -0.035 4.035 10 C -0.206 4.206 11 C 0.147 3.853 12 N -0.531 5.531 13 C 0.399 3.601 14 N -0.619 5.619 15 C 0.093 3.907 16 C 0.107 3.893 17 C -0.188 4.188 18 C 0.096 3.904 19 C -0.152 4.152 20 C 0.188 3.812 21 H 0.057 0.943 22 N -0.745 5.745 23 C -0.242 4.242 24 H 0.090 0.910 25 C 0.006 3.994 26 N -0.933 5.933 27 Si 0.881 3.119 28 H -0.285 1.285 29 H -0.292 1.292 30 H -0.276 1.276 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.092 0.908 37 H 0.071 0.929 38 H 0.142 0.858 39 H 0.162 0.838 40 H 0.054 0.946 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.056 0.944 44 H 0.068 0.932 45 H 0.058 0.942 46 H 0.140 0.860 47 H 0.072 0.928 48 H 0.090 0.910 49 H 0.082 0.918 50 H 0.058 0.942 51 H 0.361 0.639 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.198 19.011 10.285 24.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.128 4.128 4 H 0.087 0.913 5 C -0.003 4.003 6 N -0.327 5.327 7 C 0.346 3.654 8 O -0.416 6.416 9 C -0.046 4.046 10 C -0.229 4.229 11 C -0.010 4.010 12 N -0.249 5.249 13 C 0.165 3.835 14 N -0.334 5.334 15 C -0.050 4.050 16 C -0.036 4.036 17 C -0.213 4.213 18 C -0.027 4.027 19 C -0.193 4.193 20 C 0.079 3.921 21 H 0.075 0.925 22 N -0.387 5.387 23 C -0.371 4.371 24 H 0.108 0.892 25 C -0.190 4.190 26 N -0.581 5.581 27 Si 0.712 3.288 28 H -0.212 1.212 29 H -0.218 1.218 30 H -0.203 1.203 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.111 0.889 37 H 0.089 0.911 38 H 0.160 0.840 39 H 0.179 0.821 40 H 0.072 0.928 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.075 0.925 44 H 0.087 0.913 45 H 0.076 0.924 46 H 0.157 0.843 47 H 0.090 0.910 48 H 0.108 0.892 49 H 0.101 0.899 50 H 0.076 0.924 51 H 0.194 0.806 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.289 19.797 10.361 25.034 hybrid contribution -0.969 -0.909 -1.343 1.889 sum -12.258 18.888 9.018 24.256 Atomic orbital electron populations 1.21852 0.96632 1.01184 1.01438 1.21465 0.94545 0.95627 1.03487 1.21829 0.97683 0.96315 0.97002 0.91257 1.21786 0.99566 0.81058 0.97850 1.48062 1.08882 1.06449 1.69343 1.18284 0.86439 0.83763 0.76904 1.90758 1.13564 1.85938 1.51364 1.20010 0.94511 0.93402 0.96688 1.22119 0.96691 0.99911 1.04213 1.22379 0.97890 0.86735 0.94021 1.67039 1.11054 1.33885 1.12891 1.18159 0.89420 0.85871 0.90082 1.46189 1.21036 1.06172 1.59965 1.21783 0.83278 1.03290 0.96691 1.21499 0.96587 0.83519 1.01970 1.21443 1.03198 0.90658 1.06015 1.22264 0.78985 1.02223 0.99226 1.22654 1.02703 0.98660 0.95251 1.20169 0.90628 0.90673 0.90681 0.92454 1.42773 1.16522 1.66240 1.13120 1.19044 0.90411 1.27259 1.00431 0.89179 1.24649 0.96402 1.00274 0.97670 1.69691 1.19340 1.41529 1.27538 0.86603 0.81174 0.77308 0.83729 1.21212 1.21804 1.20267 0.92942 0.93094 0.93029 0.90388 0.91894 0.88938 0.91115 0.84037 0.82087 0.92792 0.90843 0.90905 0.92510 0.91291 0.92383 0.84260 0.90964 0.89229 0.89927 0.92355 0.80625 0.93065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.67 37.16 0.36 -1.60 16 2 C -0.11 -1.69 5.31 -26.73 -0.14 -1.83 16 3 C -0.11 -1.64 1.92 -90.50 -0.17 -1.82 16 4 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 5 C 0.12 1.62 5.34 -3.71 -0.02 1.60 16 6 N -0.60 -8.03 2.97 -173.76 -0.52 -8.54 16 7 C 0.56 8.10 7.38 -12.18 -0.09 8.01 16 8 O -0.54 -9.28 16.37 5.35 0.09 -9.19 16 9 C -0.04 -0.44 5.14 -104.69 -0.54 -0.98 16 10 C -0.21 -2.15 7.49 -39.02 -0.29 -2.44 16 11 C 0.15 1.45 11.16 -17.62 -0.20 1.26 16 12 N -0.53 -6.20 9.54 -12.48 -0.12 -6.31 16 13 C 0.40 4.66 7.37 -155.07 -1.14 3.52 16 14 N -0.62 -5.85 3.39 -189.68 -0.64 -6.50 16 15 C 0.09 0.63 10.25 59.85 0.61 1.25 16 16 C 0.11 0.80 10.18 59.85 0.61 1.41 16 17 C -0.19 -2.30 8.92 -38.79 -0.35 -2.64 16 18 C 0.10 1.19 4.93 -3.71 -0.02 1.17 16 19 C -0.15 -2.40 5.66 -26.61 -0.15 -2.55 16 20 C 0.19 3.32 2.19 -67.89 -0.15 3.17 16 21 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 22 N -0.74 -16.49 4.13 -53.38 -0.22 -16.71 16 23 C -0.24 -6.45 10.41 -15.06 -0.16 -6.61 16 24 H 0.09 2.57 8.06 -52.48 -0.42 2.15 16 25 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 26 N -0.93 -28.62 13.97 55.49 0.78 -27.85 16 27 Si 0.88 21.69 27.73 -169.99 -4.71 16.98 16 28 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 29 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 30 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 31 H 0.05 0.62 6.70 -51.93 -0.35 0.27 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 1.37 7.22 -51.93 -0.37 0.99 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.09 1.31 5.72 -51.93 -0.30 1.01 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.14 1.24 6.64 -52.48 -0.35 0.89 16 39 H 0.16 1.10 8.06 -52.48 -0.42 0.67 16 40 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.07 0.35 7.92 -51.93 -0.41 -0.06 16 42 H 0.07 0.52 5.97 -51.93 -0.31 0.21 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.34 7.79 -51.93 -0.40 -0.06 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.14 1.63 6.03 -52.48 -0.32 1.31 16 47 H 0.07 0.80 8.13 -51.93 -0.42 0.37 16 48 H 0.09 1.02 4.73 -51.93 -0.25 0.77 16 49 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 50 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 51 H 0.36 8.07 5.37 -40.82 -0.22 7.85 16 52 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 403.84 15.07 6.09 6.09 Total: -1.00 -33.22 403.84 -9.56 -42.78 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -8.36 Total: 8.27 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: -1.93 Total: 0.99 kcal Atomic # 7 Polarization: -65.19 SS G_CDS: -0.72 Total: -65.91 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.09 Total: -9.19 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.71 Total: 16.98 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.22 -9.56 -42.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037928909.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.491 kcal (2) G-P(sol) polarization free energy of solvation -33.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds