Wall clock time and date at job start Wed Apr 1 2020 06:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46611 * 2 1 4 4 H 1.08997 * 109.49996 * 55.06864 * 3 2 1 5 5 C 1.53191 * 109.49858 * 294.99834 * 3 2 1 6 6 N 1.46925 * 108.77383 * 185.38347 * 5 3 2 7 7 C 1.34782 * 120.63065 * 233.63447 * 6 5 3 8 8 O 1.21605 * 120.00164 * 356.28715 * 7 6 5 9 9 C 1.47430 * 120.00141 * 176.29004 * 7 6 5 10 10 C 1.41295 * 126.41140 * 43.02468 * 9 7 6 11 11 N 1.30456 * 108.01790 * 179.85693 * 10 9 7 12 12 N 1.39935 * 108.89703 * 0.40697 * 11 10 9 13 13 C 1.46497 * 125.75280 * 179.73978 * 12 11 10 14 14 C 1.53004 * 109.46841 * 304.99626 * 13 12 11 15 15 C 1.53002 * 117.49923 * 243.74705 * 14 13 12 16 16 C 1.53000 * 117.49567 * 175.08602 * 14 13 12 17 17 C 1.34261 * 108.49053 * 359.73664 * 12 11 10 18 18 C 1.46924 * 118.74306 * 53.61074 * 6 5 3 19 19 C 1.53194 * 108.89215 * 306.32268 * 18 6 5 20 20 C 1.53047 * 109.52214 * 175.14821 * 3 2 1 21 21 H 1.09003 * 109.45999 * 61.31110 * 20 3 2 22 22 N 1.46506 * 109.45732 * 301.33990 * 20 3 2 23 23 C 1.36930 * 119.99574 * 155.00000 * 22 20 3 24 24 H 1.08003 * 120.00755 * 359.97438 * 23 22 20 25 25 C 1.38815 * 119.99785 * 179.97438 * 23 22 20 26 26 N 1.31622 * 120.00145 * 179.97438 * 25 23 22 27 27 Si 1.86796 * 120.00077 * 0.02562 * 25 23 22 28 28 H 1.48506 * 109.47069 * 89.99814 * 27 25 23 29 29 H 1.48491 * 109.47529 * 209.99657 * 27 25 23 30 30 H 1.48500 * 109.46966 * 330.00177 * 27 25 23 31 31 H 1.09004 * 109.46681 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47347 * 299.99589 * 1 2 3 33 33 H 1.08997 * 109.47731 * 59.99744 * 1 2 3 34 34 H 1.09000 * 109.46697 * 240.00724 * 2 1 3 35 35 H 1.08993 * 109.47281 * 120.00108 * 2 1 3 36 36 H 1.09002 * 109.58251 * 65.60110 * 5 3 2 37 37 H 1.09000 * 109.59187 * 305.17056 * 5 3 2 38 38 H 1.07994 * 125.99114 * 359.97438 * 10 9 7 39 39 H 1.08999 * 109.47457 * 64.99711 * 13 12 11 40 40 H 1.08997 * 109.46867 * 185.00222 * 13 12 11 41 41 H 1.09003 * 115.55161 * 29.42225 * 14 13 12 42 42 H 1.08993 * 117.50023 * 0.02562 * 15 14 13 43 43 H 1.08996 * 117.49413 * 145.02645 * 15 14 13 44 44 H 1.09005 * 117.49707 * 214.97850 * 16 14 13 45 45 H 1.08994 * 117.50352 * 359.97438 * 16 14 13 46 46 H 1.07998 * 126.28478 * 180.02562 * 17 12 11 47 47 H 1.09005 * 109.57984 * 66.17532 * 18 6 5 48 48 H 1.08990 * 109.59187 * 186.45840 * 18 6 5 49 49 H 1.09001 * 109.49986 * 174.65141 * 19 18 6 50 50 H 1.09001 * 109.49545 * 294.74807 * 19 18 6 51 51 H 0.96996 * 119.99664 * 335.00018 * 22 20 3 52 52 H 0.97002 * 120.00122 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6065 1.9817 0.8423 5 6 1.6349 2.1280 -1.3088 6 7 2.2407 3.4660 -1.3489 7 6 1.4801 4.5580 -1.5624 8 8 0.2920 4.4363 -1.7911 9 6 2.0886 5.9002 -1.5188 10 6 3.3252 6.2793 -2.0875 11 7 3.5124 7.5462 -1.8386 12 7 2.4251 8.0287 -1.1016 13 6 2.2591 9.4025 -0.6207 14 6 3.4803 9.8034 0.2093 15 6 3.2569 10.1124 1.6910 16 6 3.5521 11.2480 0.7079 17 6 1.5598 7.0202 -0.9095 18 6 3.6912 3.5910 -1.1515 19 6 4.0760 2.8914 0.1559 20 6 3.5655 1.4458 0.1220 21 1 3.9993 0.9279 -0.7335 22 7 3.9578 0.7619 1.3568 23 6 5.1964 0.1867 1.4570 24 1 5.8840 0.2368 0.6257 25 6 5.5683 -0.4608 2.6272 26 7 6.7587 -1.0142 2.7234 27 14 4.3789 -0.5482 4.0648 28 1 3.5469 -1.7726 3.9453 29 1 5.1428 -0.5913 5.3375 30 1 3.5011 0.6495 4.0546 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 1.8933 -0.5137 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 0.5495 2.2169 -1.3540 37 1 1.9911 1.5401 -2.1547 38 1 3.9968 5.6340 -2.6342 39 1 2.1613 10.0761 -1.4720 40 1 1.3633 9.4653 -0.0029 41 1 4.4168 9.3196 -0.0684 42 1 2.2401 10.0297 2.0746 43 1 4.0466 9.8323 2.3881 44 1 4.5360 11.7146 0.7588 45 1 2.7297 11.9130 0.4444 46 1 0.6221 7.0754 -0.3765 47 1 4.2151 3.1223 -1.9846 48 1 3.9629 4.6450 -1.0956 49 1 5.1605 2.8953 0.2652 50 1 3.6233 3.4171 0.9967 51 1 3.3401 0.7165 2.1033 52 1 7.0187 -1.4663 3.5412 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037947725.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:27 Heat of formation + Delta-G solvation = 82.101663 kcal Electronic energy + Delta-G solvation = -30959.411179 eV Core-core repulsion = 26961.843257 eV Total energy + Delta-G solvation = -3997.567923 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.64434 -39.78373 -38.00858 -37.62765 -34.82187 -33.91821 -33.15851 -31.73676 -30.61370 -29.84681 -29.04919 -27.48637 -25.25953 -23.96444 -22.99227 -22.86915 -22.08545 -21.78981 -20.81851 -20.59841 -19.92538 -19.16771 -17.77629 -17.42243 -16.49792 -16.17873 -15.81205 -15.44195 -14.98452 -14.83757 -14.66400 -14.30334 -14.22910 -13.90030 -13.64070 -13.48891 -13.31588 -13.20471 -13.05839 -12.71728 -12.61625 -12.34340 -12.20200 -12.01734 -11.81845 -11.77733 -11.39166 -11.15833 -11.00762 -10.98116 -10.94527 -10.75305 -10.57816 -10.43536 -10.29105 -10.19471 -9.77532 -9.73756 -9.67285 -9.57171 -8.92425 -8.79976 -8.41329 -7.26163 -5.77895 -3.12823 1.45717 2.05096 2.11958 2.99152 3.26114 3.36118 3.36490 3.39752 3.44776 3.90212 4.29371 4.40971 4.47566 4.55199 4.58272 4.64928 4.86204 4.87544 4.96582 5.02246 5.09571 5.15951 5.24283 5.27953 5.31480 5.41778 5.42216 5.48485 5.51855 5.55442 5.62120 5.66627 5.67197 5.71671 5.82191 5.97468 6.05351 6.07594 6.14853 6.20844 6.28623 6.32735 6.38335 6.51554 6.59786 6.61426 6.73306 6.85102 6.98633 7.35478 7.57063 7.98341 8.31803 8.41441 9.19952 9.92831 10.13027 11.40522 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010221 B = 0.002895 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.818539 B = 9670.669563 C =11272.519532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.108 4.108 4 H 0.068 0.932 5 C 0.122 3.878 6 N -0.600 5.600 7 C 0.595 3.405 8 O -0.554 6.554 9 C -0.281 4.281 10 C 0.079 3.921 11 N -0.293 5.293 12 N -0.359 5.359 13 C 0.164 3.836 14 C -0.172 4.172 15 C -0.177 4.177 16 C -0.169 4.169 17 C 0.116 3.884 18 C 0.098 3.902 19 C -0.150 4.150 20 C 0.188 3.812 21 H 0.057 0.943 22 N -0.745 5.745 23 C -0.240 4.240 24 H 0.090 0.910 25 C 0.005 3.995 26 N -0.934 5.934 27 Si 0.881 3.119 28 H -0.284 1.284 29 H -0.292 1.292 30 H -0.278 1.278 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.067 0.933 38 H 0.193 0.807 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.120 0.880 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.099 0.901 45 H 0.097 0.903 46 H 0.182 0.818 47 H 0.069 0.931 48 H 0.087 0.913 49 H 0.079 0.921 50 H 0.057 0.943 51 H 0.360 0.640 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.012 21.000 -7.746 24.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.128 4.128 4 H 0.087 0.913 5 C -0.001 4.001 6 N -0.331 5.331 7 C 0.383 3.617 8 O -0.433 6.433 9 C -0.296 4.296 10 C -0.108 4.108 11 N -0.113 5.113 12 N -0.138 5.138 13 C 0.043 3.957 14 C -0.190 4.190 15 C -0.214 4.214 16 C -0.207 4.207 17 C -0.035 4.035 18 C -0.025 4.025 19 C -0.191 4.191 20 C 0.078 3.922 21 H 0.075 0.925 22 N -0.387 5.387 23 C -0.370 4.370 24 H 0.108 0.892 25 C -0.191 4.191 26 N -0.582 5.582 27 Si 0.712 3.288 28 H -0.211 1.211 29 H -0.219 1.219 30 H -0.204 1.204 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.109 0.891 37 H 0.085 0.915 38 H 0.209 0.791 39 H 0.111 0.889 40 H 0.117 0.883 41 H 0.138 0.862 42 H 0.115 0.885 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.116 0.884 46 H 0.199 0.801 47 H 0.087 0.913 48 H 0.105 0.895 49 H 0.098 0.902 50 H 0.075 0.925 51 H 0.193 0.807 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.624 21.978 -8.009 25.691 hybrid contribution -1.079 -0.805 1.419 1.956 sum -11.703 21.173 -6.589 25.074 Atomic orbital electron populations 1.21857 0.96649 1.01156 1.01468 1.21458 0.94527 0.95725 1.03392 1.21825 0.97588 0.96214 0.97171 0.91340 1.21712 0.99449 0.81414 0.97496 1.47974 1.08559 1.06383 1.70208 1.17304 0.85411 0.83011 0.75950 1.90744 1.15563 1.86767 1.50221 1.20200 0.99563 0.95242 1.14594 1.24131 0.95314 0.92600 0.98729 1.77142 1.07880 1.11977 1.14270 1.48406 1.15301 1.09114 1.40983 1.21366 0.97906 0.78082 0.98345 1.22565 1.00164 0.99988 0.96309 1.23136 1.03277 1.02818 0.92158 1.22988 1.03637 0.90626 1.03422 1.22816 0.95799 0.86621 0.98230 1.22134 0.79387 1.01981 0.99001 1.22671 1.02404 0.98602 0.95401 1.20235 0.90668 0.90668 0.90581 0.92486 1.42785 1.16560 1.66308 1.13039 1.19054 0.90634 1.26861 1.00405 0.89186 1.24650 0.96411 1.00369 0.97647 1.69697 1.19258 1.41683 1.27586 0.86603 0.80967 0.77809 0.83470 1.21074 1.21864 1.20394 0.93069 0.93122 0.92860 0.91873 0.90565 0.89075 0.91451 0.79074 0.88922 0.88279 0.86192 0.88487 0.88333 0.88215 0.88432 0.80055 0.91293 0.89495 0.90215 0.92452 0.80668 0.93107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.67 37.16 0.36 -1.61 16 2 C -0.11 -1.69 5.31 -26.73 -0.14 -1.84 16 3 C -0.11 -1.66 1.93 -90.50 -0.17 -1.84 16 4 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 5 C 0.12 1.70 5.31 -3.71 -0.02 1.68 16 6 N -0.60 -8.30 2.97 -174.03 -0.52 -8.81 16 7 C 0.60 8.71 7.59 -12.52 -0.09 8.62 16 8 O -0.55 -9.67 16.52 5.27 0.09 -9.58 16 9 C -0.28 -3.50 5.34 -105.07 -0.56 -4.06 16 10 C 0.08 0.90 9.58 -16.97 -0.16 0.73 16 11 N -0.29 -3.42 12.14 30.86 0.37 -3.04 16 12 N -0.36 -3.53 3.65 -60.81 -0.22 -3.75 16 13 C 0.16 1.06 6.77 -4.04 -0.03 1.03 16 14 C -0.17 -1.19 5.92 -90.62 -0.54 -1.73 16 15 C -0.18 -1.08 10.18 -26.69 -0.27 -1.35 16 16 C -0.17 -0.88 10.25 -26.69 -0.27 -1.16 16 17 C 0.12 1.22 11.44 -16.56 -0.19 1.03 16 18 C 0.10 1.26 5.70 -3.71 -0.02 1.24 16 19 C -0.15 -2.43 5.69 -26.45 -0.15 -2.58 16 20 C 0.19 3.37 2.20 -67.72 -0.15 3.23 16 21 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 22 N -0.75 -16.69 4.14 -53.22 -0.22 -16.91 16 23 C -0.24 -6.46 10.41 -15.06 -0.16 -6.62 16 24 H 0.09 2.60 8.06 -52.48 -0.42 2.18 16 25 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 26 N -0.93 -28.85 13.97 55.49 0.78 -28.07 16 27 Si 0.88 21.82 27.74 -169.99 -4.71 17.10 16 28 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 29 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 30 H -0.28 -6.52 6.52 56.52 0.37 -6.16 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.63 6.70 -51.93 -0.35 0.29 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.08 1.33 7.22 -51.93 -0.38 0.95 16 36 H 0.09 1.32 5.74 -51.93 -0.30 1.02 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.19 1.74 7.09 -52.49 -0.37 1.37 16 39 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.10 0.41 7.79 -51.93 -0.40 0.01 16 41 H 0.12 1.09 7.90 -51.93 -0.41 0.68 16 42 H 0.10 0.50 8.03 -51.93 -0.42 0.08 16 43 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.18 1.47 8.06 -52.49 -0.42 1.05 16 47 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.09 1.02 4.13 -51.93 -0.21 0.80 16 49 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 50 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 51 H 0.36 8.14 5.37 -40.82 -0.22 7.92 16 52 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 410.84 15.07 6.19 6.19 Total: -1.00 -33.67 410.84 -9.48 -43.15 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -8.57 Total: 8.89 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -2.67 Total: -5.17 kcal Atomic # 7 Polarization: -60.77 SS G_CDS: 0.19 Total: -60.58 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.09 Total: -9.58 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.71 Total: 17.10 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.67 -9.48 -43.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037947725.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.247 kcal (2) G-P(sol) polarization free energy of solvation -33.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds