Wall clock time and date at job start Wed Apr 1 2020 06:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47256 * 2 1 4 4 H 1.08996 * 109.49277 * 304.93480 * 3 2 1 5 5 C 1.53193 * 109.49728 * 64.99912 * 3 2 1 6 6 N 1.46926 * 108.77378 * 174.59071 * 5 3 2 7 7 C 1.34771 * 120.63382 * 126.36800 * 6 5 3 8 8 O 1.21607 * 119.99600 * 3.70344 * 7 6 5 9 9 C 1.47429 * 120.00149 * 183.70104 * 7 6 5 10 10 C 1.41292 * 126.41149 * 317.05874 * 9 7 6 11 11 N 1.30448 * 108.01810 * 180.02562 * 10 9 7 12 12 N 1.39931 * 108.89997 * 359.97438 * 11 10 9 13 13 C 1.46505 * 125.75531 * 179.97438 * 12 11 10 14 14 C 1.53001 * 109.47087 * 305.00580 * 13 12 11 15 15 C 1.52995 * 117.49940 * 243.61814 * 14 13 12 16 16 C 1.52999 * 117.49579 * 174.99475 * 14 13 12 17 17 C 1.34259 * 108.49214 * 0.02562 * 12 11 10 18 18 C 1.46928 * 118.73556 * 306.63751 * 6 5 3 19 19 C 1.52763 * 109.00737 * 53.31694 * 18 6 5 20 20 C 1.53042 * 109.49638 * 184.83944 * 3 2 1 21 21 H 1.08998 * 109.46209 * 58.67685 * 20 3 2 22 22 N 1.46501 * 109.45885 * 298.69957 * 20 3 2 23 23 C 1.36936 * 119.99725 * 155.00378 * 22 20 3 24 24 H 1.07999 * 120.00451 * 359.97438 * 23 22 20 25 25 C 1.38815 * 119.99800 * 180.02562 * 23 22 20 26 26 N 1.31629 * 119.99975 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 119.99969 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.47186 * 59.99972 * 27 25 23 29 29 H 1.48502 * 109.46985 * 179.97438 * 27 25 23 30 30 H 1.48493 * 109.46880 * 299.99464 * 27 25 23 31 31 H 1.08998 * 109.46530 * 60.00193 * 1 2 3 32 32 H 1.08995 * 109.46891 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.46895 * 300.00175 * 1 2 3 34 34 H 1.09002 * 109.47563 * 239.99911 * 2 1 3 35 35 H 1.09001 * 109.47259 * 119.99834 * 2 1 3 36 36 H 1.08997 * 109.58887 * 54.80072 * 5 3 2 37 37 H 1.09000 * 109.69922 * 294.44646 * 5 3 2 38 38 H 1.07997 * 125.98857 * 0.04949 * 10 9 7 39 39 H 1.08995 * 109.46570 * 65.00486 * 13 12 11 40 40 H 1.08995 * 109.47364 * 185.00885 * 13 12 11 41 41 H 1.09000 * 115.54995 * 29.32787 * 14 13 12 42 42 H 1.09003 * 117.49898 * 0.02562 * 15 14 13 43 43 H 1.09004 * 117.50033 * 145.02417 * 15 14 13 44 44 H 1.09001 * 117.49886 * 214.98086 * 16 14 13 45 45 H 1.08993 * 117.50194 * 359.97438 * 16 14 13 46 46 H 1.08003 * 126.29091 * 179.73489 * 17 12 11 47 47 H 1.08999 * 109.58701 * 173.14566 * 18 6 5 48 48 H 1.08991 * 109.58821 * 293.57486 * 18 6 5 49 49 H 1.09005 * 109.56530 * 185.55244 * 19 18 6 50 50 H 1.09002 * 109.36432 * 65.49302 * 19 18 6 51 51 H 0.96998 * 119.99890 * 335.00267 * 22 20 3 52 52 H 0.96997 * 119.99693 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6066 1.9816 -0.8423 5 6 1.6351 2.1280 1.3088 6 7 2.2415 3.4657 1.3493 7 6 1.4816 4.5580 1.5627 8 8 0.2933 4.4368 1.7909 9 6 2.0908 5.8999 1.5195 10 6 3.3282 6.2778 2.0874 11 7 3.5170 7.5440 1.8372 12 7 2.4261 8.0295 1.1077 13 6 2.2577 9.4053 0.6330 14 6 2.3764 10.3704 1.8142 15 6 1.1428 11.2002 2.1753 16 6 2.3461 11.8691 1.5077 17 6 1.5591 7.0222 0.9170 18 6 3.6914 3.5904 1.1466 19 6 4.0742 2.8880 -0.1548 20 6 3.5656 1.4449 -0.1217 21 1 3.8575 0.9361 -1.0404 22 7 4.1480 0.7485 1.0281 23 6 5.3861 0.1727 0.9246 24 1 5.9331 0.2316 -0.0048 25 6 5.9378 -0.4876 2.0139 26 7 5.2709 -0.5599 3.1465 27 14 7.6264 -1.2737 1.8725 28 1 8.6308 -0.2323 1.5380 29 1 7.9859 -1.9104 3.1651 30 1 7.6052 -2.3030 0.8023 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8899 34 1 1.8935 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 1.9908 1.5398 2.1547 37 1 0.5498 2.2172 1.3563 38 1 4.0001 5.6315 2.6326 39 1 3.0300 9.6332 -0.1015 40 1 1.2755 9.5133 0.1730 41 1 3.0158 10.0368 2.6315 42 1 0.2464 11.0582 1.5716 43 1 0.9702 11.4125 3.2304 44 1 2.9651 12.5215 2.1236 45 1 2.2419 12.1675 0.4645 46 1 0.6168 7.0805 0.3925 47 1 3.9624 4.6444 1.0847 48 1 4.2182 3.1238 1.9790 49 1 5.1586 2.8891 -0.2650 50 1 3.6220 3.4138 -0.9958 51 1 3.6566 0.6953 1.8627 52 1 5.6566 -1.0209 3.9077 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037947726.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:32 Heat of formation + Delta-G solvation = 80.518014 kcal Electronic energy + Delta-G solvation = -31128.811110 eV Core-core repulsion = 27131.174516 eV Total energy + Delta-G solvation = -3997.636595 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.50563 -39.64935 -37.97889 -37.50679 -34.41553 -33.71452 -33.04600 -31.62807 -30.44690 -29.40530 -28.61752 -27.36490 -25.08587 -23.78459 -23.49474 -22.87366 -22.16845 -21.92093 -20.77765 -20.48596 -19.46271 -18.36680 -17.43243 -17.29804 -16.43772 -15.84797 -15.71465 -15.30595 -14.94302 -14.64286 -14.47015 -14.20756 -14.08993 -13.91636 -13.64134 -13.27031 -13.22620 -13.10949 -13.00851 -12.59332 -12.46910 -12.18704 -12.08173 -12.00947 -11.65262 -11.34393 -11.07037 -10.99541 -10.96569 -10.89424 -10.75284 -10.65730 -10.53962 -10.25195 -10.21698 -10.15932 -9.73549 -9.60572 -9.53393 -9.47709 -8.88431 -8.65052 -8.09021 -6.93916 -5.76014 -3.04147 1.57811 2.16532 2.28285 3.22586 3.29637 3.43803 3.49084 3.49699 3.56974 3.96310 4.32995 4.43793 4.54579 4.59971 4.65528 4.75621 4.96225 5.00195 5.07829 5.16215 5.21615 5.35487 5.40592 5.41344 5.43831 5.58137 5.61013 5.62046 5.65784 5.66855 5.74613 5.74869 5.89263 5.91090 5.97966 6.16106 6.21653 6.27328 6.36085 6.41490 6.45426 6.48960 6.62131 6.71496 6.73071 6.77187 6.83771 7.00239 7.09560 7.49055 7.70867 7.85189 8.42639 8.54553 9.54171 10.11387 10.46652 11.46286 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012948 B = 0.002667 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.900166 B =10497.665193 C =11987.647563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.102 4.102 4 H 0.065 0.935 5 C 0.121 3.879 6 N -0.593 5.593 7 C 0.591 3.409 8 O -0.559 6.559 9 C -0.276 4.276 10 C 0.082 3.918 11 N -0.295 5.295 12 N -0.361 5.361 13 C 0.165 3.835 14 C -0.170 4.170 15 C -0.178 4.178 16 C -0.170 4.170 17 C 0.111 3.889 18 C 0.107 3.893 19 C -0.149 4.149 20 C 0.179 3.821 21 H 0.049 0.951 22 N -0.718 5.718 23 C -0.236 4.236 24 H 0.068 0.932 25 C -0.011 4.011 26 N -0.932 5.932 27 Si 0.903 3.097 28 H -0.287 1.287 29 H -0.292 1.292 30 H -0.287 1.287 31 H 0.047 0.953 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.194 0.806 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.120 0.880 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.098 0.902 46 H 0.182 0.818 47 H 0.078 0.922 48 H 0.084 0.916 49 H 0.073 0.927 50 H 0.046 0.954 51 H 0.384 0.616 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.792 20.106 -6.632 22.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.122 4.122 4 H 0.083 0.917 5 C -0.002 4.002 6 N -0.324 5.324 7 C 0.379 3.621 8 O -0.438 6.438 9 C -0.291 4.291 10 C -0.105 4.105 11 N -0.115 5.115 12 N -0.141 5.141 13 C 0.044 3.956 14 C -0.189 4.189 15 C -0.215 4.215 16 C -0.207 4.207 17 C -0.039 4.039 18 C -0.016 4.016 19 C -0.190 4.190 20 C 0.068 3.932 21 H 0.067 0.933 22 N -0.360 5.360 23 C -0.368 4.368 24 H 0.086 0.914 25 C -0.208 4.208 26 N -0.580 5.580 27 Si 0.735 3.265 28 H -0.214 1.214 29 H -0.218 1.218 30 H -0.214 1.214 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.210 0.790 39 H 0.110 0.890 40 H 0.116 0.884 41 H 0.138 0.862 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.117 0.883 45 H 0.116 0.884 46 H 0.199 0.801 47 H 0.096 0.904 48 H 0.102 0.898 49 H 0.091 0.909 50 H 0.065 0.935 51 H 0.219 0.781 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.468 21.093 -6.445 23.626 hybrid contribution 0.471 -1.170 0.125 1.267 sum -7.997 19.924 -6.320 22.380 Atomic orbital electron populations 1.21854 0.96859 1.00988 1.01351 1.21419 0.94239 0.95802 1.03342 1.21742 0.97374 0.96057 0.97076 0.91671 1.21672 0.98710 0.81567 0.98211 1.47938 1.08725 1.06226 1.69530 1.17294 0.85443 0.83021 0.76309 1.90731 1.15630 1.86809 1.50664 1.20252 0.99424 0.95353 1.14105 1.24203 0.95458 0.92480 0.98347 1.77142 1.07754 1.11937 1.14653 1.48389 1.15050 1.08717 1.41929 1.21331 1.03299 0.75790 0.95220 1.22570 1.03178 0.92267 1.00900 1.23115 0.92471 1.03862 1.02022 1.22975 1.01759 0.93925 1.02044 1.22781 0.95620 0.86758 0.98693 1.21898 0.79213 1.00669 0.99813 1.22434 1.01651 0.99145 0.95747 1.20222 0.89759 0.90689 0.92515 0.93276 1.42463 1.18974 1.63999 1.10599 1.19164 0.93608 1.26967 0.97015 0.91378 1.24693 0.98469 1.01529 0.96062 1.69641 1.38084 1.48096 1.02229 0.86329 0.84479 0.79192 0.76517 1.21407 1.21846 1.21434 0.93434 0.93214 0.92727 0.92099 0.90467 0.90768 0.89630 0.78957 0.88957 0.88364 0.86246 0.88482 0.88486 0.88268 0.88401 0.80137 0.90362 0.89796 0.90878 0.93526 0.78064 0.93508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.67 37.16 0.36 -1.73 16 2 C -0.11 -1.76 5.19 -26.73 -0.14 -1.90 16 3 C -0.10 -1.68 2.14 -90.50 -0.19 -1.87 16 4 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 5 C 0.12 2.07 5.02 -3.71 -0.02 2.05 16 6 N -0.59 -9.86 2.98 -174.30 -0.52 -10.38 16 7 C 0.59 9.96 7.59 -12.52 -0.09 9.86 16 8 O -0.56 -10.90 16.52 5.27 0.09 -10.81 16 9 C -0.28 -3.93 5.33 -105.07 -0.56 -4.49 16 10 C 0.08 1.11 9.57 -16.98 -0.16 0.94 16 11 N -0.29 -3.88 12.14 30.86 0.37 -3.50 16 12 N -0.36 -3.91 3.65 -60.81 -0.22 -4.13 16 13 C 0.16 1.16 6.77 -4.04 -0.03 1.14 16 14 C -0.17 -1.24 5.92 -90.62 -0.54 -1.78 16 15 C -0.18 -1.07 10.18 -26.73 -0.27 -1.34 16 16 C -0.17 -0.91 10.25 -26.73 -0.27 -1.18 16 17 C 0.11 1.29 11.44 -16.56 -0.19 1.10 16 18 C 0.11 1.72 5.42 -3.93 -0.02 1.70 16 19 C -0.15 -2.49 5.76 -26.83 -0.15 -2.64 16 20 C 0.18 3.32 2.53 -67.88 -0.17 3.15 16 21 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 22 N -0.72 -16.36 3.72 -53.38 -0.20 -16.56 16 23 C -0.24 -6.13 9.93 -15.06 -0.15 -6.28 16 24 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 25 C -0.01 -0.31 5.50 -17.42 -0.10 -0.41 16 26 N -0.93 -26.99 13.06 55.49 0.72 -26.26 16 27 Si 0.90 21.79 29.55 -169.99 -5.02 16.77 16 28 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 29 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 30 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.75 6.70 -51.93 -0.35 0.41 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.08 1.44 7.69 -51.93 -0.40 1.04 16 36 H 0.07 1.41 6.64 -51.93 -0.34 1.07 16 37 H 0.09 1.47 5.74 -51.93 -0.30 1.17 16 38 H 0.19 2.38 7.10 -52.49 -0.37 2.01 16 39 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.10 0.45 7.79 -51.93 -0.40 0.05 16 41 H 0.12 1.14 7.90 -51.93 -0.41 0.73 16 42 H 0.10 0.49 8.03 -51.93 -0.42 0.07 16 43 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.18 1.61 8.06 -52.48 -0.42 1.19 16 47 H 0.08 1.12 4.16 -51.93 -0.22 0.91 16 48 H 0.08 1.57 7.74 -51.93 -0.40 1.17 16 49 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 50 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 51 H 0.38 9.42 5.94 -40.82 -0.24 9.17 16 52 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 410.29 15.07 6.18 6.18 Total: -1.00 -31.51 410.29 -9.77 -41.28 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: -8.47 Total: 11.09 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -2.70 Total: -3.68 kcal Atomic # 7 Polarization: -61.00 SS G_CDS: 0.16 Total: -60.84 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.09 Total: -10.81 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -31.51 -9.77 -41.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037947726.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.799 kcal (2) G-P(sol) polarization free energy of solvation -31.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds