Wall clock time and date at job start Wed Apr 1 2020 06:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47048 * 2 1 4 4 H 1.08995 * 109.49420 * 304.92921 * 3 2 1 5 5 C 1.53192 * 109.49932 * 64.99823 * 3 2 1 6 6 N 1.46931 * 108.77366 * 174.61527 * 5 3 2 7 7 C 1.34773 * 120.62669 * 126.36638 * 6 5 3 8 8 O 1.21602 * 120.00006 * 3.68358 * 7 6 5 9 9 C 1.47435 * 120.00060 * 183.67229 * 7 6 5 10 10 C 1.41288 * 126.41042 * 317.19705 * 9 7 6 11 11 N 1.30454 * 108.01628 * 179.71945 * 10 9 7 12 12 N 1.39930 * 108.89616 * 0.39935 * 11 10 9 13 13 C 1.46497 * 125.75145 * 179.85035 * 12 11 10 14 14 C 1.53001 * 109.47568 * 304.69524 * 13 12 11 15 15 C 1.52999 * 117.50399 * 184.99971 * 14 13 12 16 16 C 1.53004 * 60.03275 * 252.49873 * 15 14 13 17 17 C 1.34254 * 108.49704 * 359.59022 * 12 11 10 18 18 C 1.46924 * 118.73898 * 306.64414 * 6 5 3 19 19 C 1.52767 * 109.00730 * 53.31016 * 18 6 5 20 20 C 1.53038 * 109.38144 * 305.58595 * 19 18 6 21 21 H 1.08994 * 109.45103 * 301.22272 * 20 19 18 22 22 N 1.46508 * 109.45613 * 181.26277 * 20 19 18 23 23 C 1.36935 * 120.00144 * 84.93141 * 22 20 19 24 24 H 1.08002 * 119.99601 * 359.97438 * 23 22 20 25 25 C 1.38806 * 120.00305 * 179.97438 * 23 22 20 26 26 N 1.31621 * 119.99655 * 359.97438 * 25 23 22 27 27 Si 1.86802 * 120.00376 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47163 * 359.97438 * 27 25 23 29 29 H 1.48500 * 109.46941 * 119.99705 * 27 25 23 30 30 H 1.48497 * 109.47070 * 239.99772 * 27 25 23 31 31 H 1.08994 * 109.47462 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47198 * 300.00784 * 1 2 3 33 33 H 1.09005 * 109.46989 * 59.99959 * 1 2 3 34 34 H 1.09004 * 109.47163 * 239.99999 * 2 1 3 35 35 H 1.08996 * 109.46768 * 119.99967 * 2 1 3 36 36 H 1.09002 * 109.58546 * 54.83096 * 5 3 2 37 37 H 1.08995 * 109.70192 * 294.47814 * 5 3 2 38 38 H 1.07997 * 125.99147 * 359.97438 * 10 9 7 39 39 H 1.09005 * 109.47533 * 184.69594 * 13 12 11 40 40 H 1.09002 * 109.47276 * 64.69629 * 13 12 11 41 41 H 1.09005 * 115.54847 * 330.67011 * 14 13 12 42 42 H 1.09004 * 117.49498 * 0.02562 * 15 14 13 43 43 H 1.08994 * 117.49974 * 144.99089 * 15 14 13 44 44 H 1.09002 * 117.49669 * 107.49975 * 16 15 14 45 45 H 1.08997 * 117.49756 * 252.52339 * 16 15 14 46 46 H 1.08000 * 126.29391 * 180.25827 * 17 12 11 47 47 H 1.08998 * 109.58386 * 173.14344 * 18 6 5 48 48 H 1.08998 * 109.58804 * 293.56740 * 18 6 5 49 49 H 1.09005 * 109.56326 * 185.54829 * 19 18 6 50 50 H 1.08998 * 109.38319 * 65.51761 * 19 18 6 51 51 H 0.97000 * 119.99907 * 264.93312 * 22 20 19 52 52 H 0.96999 * 119.99971 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6066 1.9816 -0.8424 5 6 1.6350 2.1281 1.3087 6 7 2.2409 3.4660 1.3489 7 6 1.4804 4.5580 1.5623 8 8 0.2922 4.4363 1.7904 9 6 2.0892 5.9002 1.5195 10 6 3.3275 6.2778 2.0853 11 7 3.5185 7.5429 1.8305 12 7 2.4235 8.0300 1.1082 13 6 2.2547 9.4057 0.6337 14 6 2.3759 10.3711 1.8144 15 6 2.1123 11.8539 1.5447 16 6 3.5398 11.3653 1.7984 17 6 1.5563 7.0228 0.9185 18 6 3.6907 3.5914 1.1459 19 6 4.0734 2.8889 -0.1556 20 6 3.5655 1.4456 -0.1220 21 1 3.9993 0.9280 0.7335 22 7 3.9578 0.7614 -1.3567 23 6 5.1964 0.1861 -1.4568 24 1 5.8842 0.2372 -0.6257 25 6 5.5679 -0.4626 -2.6264 26 7 4.7294 -0.5252 -3.6390 27 14 7.2573 -1.2480 -2.7627 28 1 8.0037 -1.0399 -1.4959 29 1 7.1075 -2.7035 -3.0162 30 1 8.0040 -0.6244 -3.8847 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5140 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8932 -0.5138 0.8900 36 1 1.9912 1.5401 2.1546 37 1 0.5497 2.2168 1.3566 38 1 4.0001 5.6314 2.6295 39 1 1.2716 9.5140 0.1754 40 1 3.0257 9.6333 -0.1024 41 1 2.0673 9.9728 2.7810 42 1 1.8520 12.1416 0.5261 43 1 1.6301 12.4310 2.3337 44 1 4.2191 11.3316 0.9465 45 1 3.9967 11.6206 2.7545 46 1 0.6150 7.0803 0.3922 47 1 3.9611 4.6454 1.0837 48 1 4.2179 3.1252 1.9782 49 1 5.1578 2.8905 -0.2661 50 1 3.6212 3.4143 -0.9968 51 1 3.3401 0.7159 -2.1032 52 1 4.9891 -0.9782 -4.4564 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037947727.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:37 Heat of formation + Delta-G solvation = 78.102441 kcal Electronic energy + Delta-G solvation = -30712.101031 eV Core-core repulsion = 26714.359689 eV Total energy + Delta-G solvation = -3997.741342 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.60163 -39.71129 -37.98361 -37.53546 -34.70582 -33.80213 -33.12980 -31.67393 -30.54254 -29.48242 -28.81729 -27.40561 -25.14437 -23.84721 -23.18669 -22.85102 -22.04346 -21.82128 -20.80585 -20.63793 -19.77814 -19.05826 -17.64013 -17.05795 -16.41389 -15.91042 -15.81891 -15.70583 -14.97525 -14.81598 -14.41711 -14.12637 -14.10247 -13.90039 -13.65994 -13.36110 -13.27191 -13.14676 -13.02107 -12.82278 -12.53463 -12.16318 -12.05047 -12.00875 -11.71764 -11.52333 -11.26448 -11.13496 -10.96634 -10.92107 -10.82666 -10.65486 -10.53890 -10.30806 -10.16432 -10.10897 -9.75637 -9.72942 -9.61452 -9.55559 -8.89484 -8.75783 -8.33942 -6.94287 -5.76721 -3.04942 1.49658 2.08670 2.16297 3.05227 3.24490 3.41637 3.42678 3.48479 3.50444 4.01376 4.24616 4.39429 4.52960 4.58615 4.61583 4.67057 4.81346 4.91726 5.02146 5.12640 5.16182 5.27908 5.34102 5.35139 5.42638 5.43371 5.51416 5.55872 5.61623 5.61778 5.65812 5.66376 5.76081 5.76790 5.94382 6.07898 6.17927 6.20596 6.25292 6.39068 6.41004 6.44802 6.51242 6.63473 6.64637 6.74523 6.87960 7.00359 7.10795 7.39910 7.63839 7.70388 8.37829 8.41687 9.53181 10.11205 10.46057 11.45853 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012330 B = 0.002475 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.276226 B =11310.713593 C =12910.240748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.104 4.104 4 H 0.069 0.931 5 C 0.121 3.879 6 N -0.599 5.599 7 C 0.594 3.406 8 O -0.554 6.554 9 C -0.280 4.280 10 C 0.077 3.923 11 N -0.289 5.289 12 N -0.360 5.360 13 C 0.163 3.837 14 C -0.168 4.168 15 C -0.173 4.173 16 C -0.168 4.168 17 C 0.114 3.886 18 C 0.099 3.901 19 C -0.150 4.150 20 C 0.183 3.817 21 H 0.048 0.952 22 N -0.721 5.721 23 C -0.235 4.235 24 H 0.070 0.930 25 C -0.014 4.014 26 N -0.932 5.932 27 Si 0.904 3.096 28 H -0.281 1.281 29 H -0.292 1.292 30 H -0.293 1.293 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.083 0.917 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.192 0.808 39 H 0.103 0.897 40 H 0.090 0.910 41 H 0.111 0.889 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.098 0.902 45 H 0.096 0.904 46 H 0.183 0.817 47 H 0.086 0.914 48 H 0.066 0.934 49 H 0.074 0.926 50 H 0.058 0.942 51 H 0.384 0.616 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.972 20.354 11.178 24.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.124 4.124 4 H 0.087 0.913 5 C -0.002 4.002 6 N -0.330 5.330 7 C 0.383 3.617 8 O -0.433 6.433 9 C -0.295 4.295 10 C -0.110 4.110 11 N -0.109 5.109 12 N -0.140 5.140 13 C 0.042 3.958 14 C -0.186 4.186 15 C -0.211 4.211 16 C -0.204 4.204 17 C -0.036 4.036 18 C -0.024 4.024 19 C -0.191 4.191 20 C 0.073 3.927 21 H 0.066 0.934 22 N -0.361 5.361 23 C -0.366 4.366 24 H 0.088 0.912 25 C -0.210 4.210 26 N -0.581 5.581 27 Si 0.735 3.265 28 H -0.206 1.206 29 H -0.220 1.220 30 H -0.220 1.220 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.108 0.892 38 H 0.208 0.792 39 H 0.121 0.879 40 H 0.108 0.892 41 H 0.129 0.871 42 H 0.116 0.884 43 H 0.117 0.883 44 H 0.116 0.884 45 H 0.115 0.885 46 H 0.200 0.800 47 H 0.104 0.896 48 H 0.084 0.916 49 H 0.093 0.907 50 H 0.076 0.924 51 H 0.218 0.782 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.636 21.342 11.405 25.091 hybrid contribution 0.382 -1.149 -0.623 1.362 sum -6.255 20.192 10.782 23.730 Atomic orbital electron populations 1.21844 0.96841 1.00997 1.01311 1.21450 0.94351 0.95743 1.03441 1.21775 0.97628 0.96198 0.96789 0.91271 1.21738 0.99382 0.81327 0.97705 1.47971 1.08560 1.06431 1.70049 1.17302 0.85421 0.83008 0.76018 1.90742 1.15535 1.86758 1.50288 1.20214 0.99557 0.95257 1.14468 1.24136 0.95402 0.92710 0.98747 1.77191 1.07429 1.11755 1.14511 1.48411 1.14720 1.08784 1.42048 1.21371 1.03569 0.75697 0.95201 1.22457 1.05539 0.90789 0.99861 1.23017 0.99703 0.95141 1.03221 1.23053 0.91190 1.02491 1.03714 1.22842 0.95763 0.86681 0.98286 1.22043 0.79504 1.01848 0.99034 1.22580 1.02059 0.99118 0.95388 1.20196 0.90787 0.90568 0.91147 0.93432 1.42424 1.16427 1.64448 1.12778 1.19259 0.91758 1.27015 0.98578 0.91190 1.24723 0.98118 1.01660 0.96493 1.69670 1.35143 1.48498 1.04746 0.86163 0.84095 0.78889 0.77324 1.20597 1.21959 1.22009 0.93216 0.93167 0.93031 0.89840 0.92448 0.91709 0.89164 0.79167 0.87871 0.89153 0.87095 0.88366 0.88334 0.88382 0.88509 0.79971 0.89625 0.91558 0.90696 0.92357 0.78240 0.93629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.67 37.16 0.36 -1.77 16 2 C -0.11 -1.81 5.31 -26.73 -0.14 -1.95 16 3 C -0.10 -1.71 1.92 -90.50 -0.17 -1.88 16 4 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 5 C 0.12 1.79 5.32 -3.71 -0.02 1.77 16 6 N -0.60 -8.66 2.98 -174.29 -0.52 -9.18 16 7 C 0.59 9.03 7.59 -12.52 -0.09 8.94 16 8 O -0.55 -9.99 16.52 5.28 0.09 -9.90 16 9 C -0.28 -3.60 5.33 -105.06 -0.56 -4.16 16 10 C 0.08 0.90 9.57 -16.98 -0.16 0.74 16 11 N -0.29 -3.46 12.34 30.86 0.38 -3.08 16 12 N -0.36 -3.64 3.65 -60.81 -0.22 -3.86 16 13 C 0.16 1.08 6.77 -4.04 -0.03 1.06 16 14 C -0.17 -1.11 5.87 -90.58 -0.53 -1.64 16 15 C -0.17 -0.84 10.25 -26.73 -0.27 -1.12 16 16 C -0.17 -1.01 10.18 -26.69 -0.27 -1.28 16 17 C 0.11 1.24 11.44 -16.56 -0.19 1.05 16 18 C 0.10 1.32 5.67 -3.93 -0.02 1.30 16 19 C -0.15 -2.53 5.64 -26.83 -0.15 -2.68 16 20 C 0.18 3.44 2.20 -67.89 -0.15 3.29 16 21 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 22 N -0.72 -17.14 4.33 -53.39 -0.23 -17.37 16 23 C -0.23 -6.25 9.93 -15.06 -0.15 -6.40 16 24 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 25 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 26 N -0.93 -27.61 13.06 55.49 0.72 -26.88 16 27 Si 0.90 22.04 29.55 -169.99 -5.02 17.01 16 28 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 29 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 30 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.65 6.70 -51.93 -0.35 0.30 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.08 1.62 7.22 -51.93 -0.37 1.24 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.09 1.39 5.74 -51.93 -0.30 1.09 16 38 H 0.19 1.80 7.10 -52.49 -0.37 1.42 16 39 H 0.10 0.44 8.06 -51.93 -0.42 0.02 16 40 H 0.09 0.55 7.88 -51.93 -0.41 0.14 16 41 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.10 0.56 8.03 -51.93 -0.42 0.14 16 45 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.18 1.54 8.06 -52.49 -0.42 1.12 16 47 H 0.09 1.04 4.15 -51.93 -0.22 0.83 16 48 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 50 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 51 H 0.38 9.89 7.51 -40.82 -0.31 9.58 16 52 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 414.28 15.07 6.24 6.24 Total: -1.00 -32.69 414.28 -9.84 -42.53 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -8.62 Total: 9.73 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -2.66 Total: -5.24 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: 0.13 Total: -60.38 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.09 Total: -9.90 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -32.69 -9.84 -42.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037947727.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.630 kcal (2) G-P(sol) polarization free energy of solvation -32.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds