Wall clock time and date at job start Wed Apr 1 2020 06:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47212 * 2 1 4 4 H 1.08997 * 109.49526 * 55.07167 * 3 2 1 5 5 C 1.53185 * 109.50019 * 295.00007 * 3 2 1 6 6 N 1.46930 * 108.77672 * 185.40866 * 5 3 2 7 7 C 1.34771 * 120.63444 * 233.58681 * 6 5 3 8 8 O 1.21608 * 119.99941 * 6.38764 * 7 6 5 9 9 C 1.47430 * 120.00053 * 186.38886 * 7 6 5 10 10 C 1.41285 * 126.41561 * 29.19784 * 9 7 6 11 11 N 1.30449 * 108.02659 * 180.02562 * 10 9 7 12 12 N 1.39937 * 108.89132 * 359.97438 * 11 10 9 13 13 C 1.46503 * 125.74869 * 180.02562 * 12 11 10 14 14 C 1.52996 * 109.46950 * 304.97591 * 13 12 11 15 15 C 1.53004 * 117.50138 * 243.74918 * 14 13 12 16 16 C 1.53001 * 117.49665 * 175.09051 * 14 13 12 17 17 C 1.34253 * 108.49279 * 0.02562 * 12 11 10 18 18 C 1.46929 * 118.73526 * 53.86531 * 6 5 3 19 19 C 1.53627 * 108.54258 * 306.09264 * 18 6 5 20 20 C 1.53043 * 109.24092 * 54.85671 * 19 18 6 21 21 H 1.09003 * 109.44764 * 178.50130 * 20 19 18 22 22 N 1.46492 * 109.46200 * 58.53193 * 20 19 18 23 23 C 1.36939 * 119.99904 * 84.92829 * 22 20 19 24 24 H 1.07996 * 120.00009 * 0.02562 * 23 22 20 25 25 C 1.38821 * 120.00124 * 180.02562 * 23 22 20 26 26 N 1.31617 * 119.99735 * 0.02562 * 25 23 22 27 27 Si 1.86802 * 120.00141 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.46742 * 0.02562 * 27 25 23 29 29 H 1.48502 * 109.46911 * 119.99773 * 27 25 23 30 30 H 1.48497 * 109.46827 * 240.00125 * 27 25 23 31 31 H 1.08997 * 109.47175 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47300 * 299.99824 * 1 2 3 33 33 H 1.08997 * 109.47005 * 59.99718 * 1 2 3 34 34 H 1.09007 * 109.47216 * 240.00360 * 2 1 3 35 35 H 1.09006 * 109.47585 * 120.00389 * 2 1 3 36 36 H 1.08997 * 109.58623 * 65.62718 * 5 3 2 37 37 H 1.08996 * 109.58812 * 305.20245 * 5 3 2 38 38 H 1.08009 * 125.98912 * 359.97438 * 10 9 7 39 39 H 1.08990 * 109.47265 * 64.97515 * 13 12 11 40 40 H 1.09005 * 109.46671 * 184.98148 * 13 12 11 41 41 H 1.09001 * 115.55739 * 29.42147 * 14 13 12 42 42 H 1.09004 * 117.49775 * 0.02562 * 15 14 13 43 43 H 1.08995 * 117.50252 * 145.02471 * 15 14 13 44 44 H 1.09005 * 117.50202 * 214.98003 * 16 14 13 45 45 H 1.09000 * 117.50347 * 359.97438 * 16 14 13 46 46 H 1.08003 * 126.28910 * 180.25722 * 17 12 11 47 47 H 1.09000 * 109.58611 * 65.92032 * 18 6 5 48 48 H 1.08989 * 109.58730 * 186.34814 * 18 6 5 49 49 H 1.08999 * 109.63387 * 294.86891 * 19 18 6 50 50 H 1.08996 * 109.45847 * 174.73773 * 19 18 6 51 51 H 0.96998 * 120.00098 * 264.93321 * 22 20 19 52 52 H 0.96998 * 120.00179 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6066 1.9815 0.8424 5 6 1.6351 2.1280 -1.3087 6 7 2.2415 3.4657 -1.3492 7 6 1.4816 4.5580 -1.5635 8 8 0.2707 4.4567 -1.6099 9 6 2.1185 5.8756 -1.7419 10 6 3.4028 6.1208 -2.2773 11 7 3.6041 7.4097 -2.2695 12 7 2.4746 8.0414 -1.7370 13 6 2.3059 9.4858 -1.5591 14 6 3.4674 10.0365 -0.7294 15 6 3.1355 10.6425 0.6358 16 6 3.5360 11.5517 -0.5287 17 6 1.5718 7.1007 -1.4168 18 6 3.6930 3.5894 -1.1577 19 6 4.0741 2.8879 0.1549 20 6 3.5656 1.4449 0.1217 21 1 3.8573 0.9360 1.0404 22 7 4.1479 0.7485 -1.0281 23 6 5.3860 0.1727 -0.9246 24 1 5.9330 0.2316 0.0048 25 6 5.9382 -0.4868 -2.0143 26 7 5.2718 -0.5581 -3.1470 27 14 7.6268 -1.2728 -1.8729 28 1 8.1617 -1.0538 -0.5050 29 1 7.5175 -2.7307 -2.1336 30 1 8.5432 -0.6594 -2.8674 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8900 36 1 0.5497 2.2174 -1.3537 37 1 1.9907 1.5398 -2.1546 38 1 4.0967 5.3723 -2.6304 39 1 2.2928 9.9729 -2.5340 40 1 1.3659 9.6808 -1.0427 41 1 4.4104 9.4983 -0.8252 42 1 2.0897 10.6484 0.9430 43 1 3.8602 10.5032 1.4379 44 1 4.5242 12.0104 -0.4921 45 1 2.7540 12.1563 -0.9881 46 1 0.5954 7.2715 -0.9881 47 1 4.2130 3.1178 -1.9915 48 1 3.9659 4.6432 -1.1031 49 1 3.6219 3.4137 0.9958 50 1 5.1584 2.8890 0.2656 51 1 3.6565 0.6953 -1.8627 52 1 5.6573 -1.0192 -3.9084 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037947728.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:42 Heat of formation + Delta-G solvation = 82.777066 kcal Electronic energy + Delta-G solvation = -31213.043533 eV Core-core repulsion = 27215.504898 eV Total energy + Delta-G solvation = -3997.538635 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.51700 -39.63571 -37.96850 -37.48823 -34.44978 -33.70949 -33.03025 -31.61515 -30.42968 -29.38491 -28.63748 -27.33764 -25.09960 -23.81149 -23.51573 -22.87137 -22.14411 -21.90473 -20.77860 -20.46677 -19.47761 -18.40360 -17.39162 -17.29980 -16.25563 -16.04030 -15.64402 -15.37126 -14.85499 -14.64246 -14.57975 -14.19852 -14.06773 -13.80797 -13.57032 -13.38433 -13.20369 -13.06126 -12.96206 -12.63749 -12.46929 -12.15382 -12.10743 -12.00618 -11.60727 -11.33612 -11.08234 -11.00810 -10.93184 -10.92544 -10.74994 -10.67068 -10.53658 -10.23708 -10.19452 -10.10596 -9.72710 -9.60794 -9.51635 -9.46374 -8.89319 -8.67955 -8.07293 -6.93756 -5.76500 -3.04392 1.54806 2.16435 2.23561 3.28552 3.35166 3.42977 3.49366 3.51159 3.60904 3.96648 4.33128 4.44225 4.54663 4.59848 4.66020 4.75521 4.96634 5.00542 5.08177 5.16660 5.22520 5.36579 5.40419 5.41738 5.43886 5.57048 5.61331 5.62572 5.64956 5.66303 5.75253 5.76147 5.88958 5.91998 5.99125 6.16205 6.21716 6.27200 6.36405 6.41960 6.46102 6.48618 6.62641 6.71339 6.73616 6.77402 6.85063 7.00767 7.10023 7.48880 7.71900 7.86335 8.42171 8.55879 9.53935 10.11253 10.46511 11.45958 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011382 B = 0.002830 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.454569 B = 9892.834677 C =11415.835769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.102 4.102 4 H 0.065 0.935 5 C 0.121 3.879 6 N -0.595 5.595 7 C 0.592 3.408 8 O -0.562 6.562 9 C -0.281 4.281 10 C 0.081 3.919 11 N -0.296 5.296 12 N -0.362 5.362 13 C 0.164 3.836 14 C -0.170 4.170 15 C -0.178 4.178 16 C -0.170 4.170 17 C 0.117 3.883 18 C 0.103 3.897 19 C -0.148 4.148 20 C 0.178 3.822 21 H 0.049 0.951 22 N -0.718 5.718 23 C -0.234 4.234 24 H 0.069 0.931 25 C -0.012 4.012 26 N -0.932 5.932 27 Si 0.902 3.098 28 H -0.282 1.282 29 H -0.293 1.293 30 H -0.293 1.293 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.197 0.803 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.120 0.880 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.097 0.903 46 H 0.183 0.817 47 H 0.084 0.916 48 H 0.081 0.919 49 H 0.047 0.953 50 H 0.072 0.928 51 H 0.384 0.616 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.826 20.157 6.283 22.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.122 4.122 4 H 0.084 0.916 5 C -0.001 4.001 6 N -0.326 5.326 7 C 0.381 3.619 8 O -0.442 6.442 9 C -0.296 4.296 10 C -0.106 4.106 11 N -0.116 5.116 12 N -0.141 5.141 13 C 0.043 3.957 14 C -0.189 4.189 15 C -0.215 4.215 16 C -0.207 4.207 17 C -0.033 4.033 18 C -0.019 4.019 19 C -0.189 4.189 20 C 0.068 3.932 21 H 0.067 0.933 22 N -0.361 5.361 23 C -0.366 4.366 24 H 0.087 0.913 25 C -0.208 4.208 26 N -0.580 5.580 27 Si 0.734 3.266 28 H -0.207 1.207 29 H -0.221 1.221 30 H -0.220 1.220 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.214 0.786 39 H 0.110 0.890 40 H 0.117 0.883 41 H 0.138 0.862 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.117 0.883 45 H 0.116 0.884 46 H 0.200 0.800 47 H 0.102 0.898 48 H 0.099 0.901 49 H 0.066 0.934 50 H 0.091 0.909 51 H 0.219 0.781 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.483 21.115 6.034 23.201 hybrid contribution 0.461 -1.145 -0.031 1.235 sum -7.021 19.970 6.003 22.003 Atomic orbital electron populations 1.21849 0.96856 1.00947 1.01376 1.21418 0.94247 0.95833 1.03306 1.21737 0.97316 0.96030 0.97160 0.91627 1.21672 0.98770 0.81483 0.98201 1.47885 1.08618 1.06253 1.69861 1.17260 0.85832 0.82800 0.76027 1.90719 1.13833 1.86198 1.53485 1.20280 0.97833 0.93807 1.17647 1.24397 0.95515 0.93403 0.97292 1.77169 1.06568 1.07594 1.20245 1.48428 1.12112 1.06512 1.47025 1.21339 0.98248 0.74967 1.01132 1.22571 1.00731 0.96556 0.99056 1.23127 1.02632 1.03863 0.91843 1.22986 1.03497 0.91818 1.02407 1.22848 0.95574 0.87651 0.97239 1.22197 0.79265 1.00682 0.99759 1.22581 1.01607 0.99140 0.95611 1.20224 0.89797 0.90682 0.92493 0.93279 1.42478 1.18986 1.63993 1.10609 1.19256 0.93527 1.26770 0.97011 0.91273 1.24692 0.98478 1.01588 0.96063 1.69655 1.37968 1.48175 1.02221 0.86188 0.84408 0.78916 0.77087 1.20689 1.22054 1.22019 0.93242 0.93410 0.92747 0.90497 0.92120 0.89589 0.90783 0.78619 0.88969 0.88342 0.86195 0.88504 0.88449 0.88250 0.88419 0.79988 0.89762 0.90140 0.93424 0.90909 0.78084 0.93624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.67 37.15 0.36 -1.75 16 2 C -0.11 -1.77 5.19 -26.73 -0.14 -1.91 16 3 C -0.10 -1.69 2.14 -90.50 -0.19 -1.88 16 4 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 5 C 0.12 2.07 5.03 -3.71 -0.02 2.05 16 6 N -0.60 -9.90 2.97 -173.77 -0.52 -10.42 16 7 C 0.59 9.99 7.62 -12.52 -0.10 9.90 16 8 O -0.56 -10.87 16.44 5.27 0.09 -10.78 16 9 C -0.28 -4.02 5.54 -105.07 -0.58 -4.60 16 10 C 0.08 1.10 9.58 -16.98 -0.16 0.94 16 11 N -0.30 -3.93 12.14 30.86 0.37 -3.56 16 12 N -0.36 -3.94 3.65 -60.81 -0.22 -4.16 16 13 C 0.16 1.17 6.77 -4.04 -0.03 1.14 16 14 C -0.17 -1.24 5.92 -90.62 -0.54 -1.77 16 15 C -0.18 -1.06 10.18 -26.69 -0.27 -1.33 16 16 C -0.17 -0.91 10.25 -26.69 -0.27 -1.18 16 17 C 0.12 1.37 11.36 -16.57 -0.19 1.18 16 18 C 0.10 1.67 4.97 -3.48 -0.02 1.65 16 19 C -0.15 -2.48 5.80 -26.38 -0.15 -2.64 16 20 C 0.18 3.32 2.53 -67.89 -0.17 3.15 16 21 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 22 N -0.72 -16.32 3.71 -53.38 -0.20 -16.52 16 23 C -0.23 -6.06 9.93 -15.06 -0.15 -6.21 16 24 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 25 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 26 N -0.93 -26.90 13.06 55.49 0.72 -26.18 16 27 Si 0.90 21.76 29.55 -169.99 -5.02 16.74 16 28 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 29 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 30 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.76 6.70 -51.93 -0.35 0.41 16 34 H 0.08 1.43 7.69 -51.93 -0.40 1.03 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.09 1.49 5.71 -51.93 -0.30 1.19 16 37 H 0.07 1.40 6.64 -51.93 -0.34 1.05 16 38 H 0.20 2.51 6.44 -52.48 -0.34 2.17 16 39 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.10 0.45 7.80 -51.93 -0.40 0.05 16 41 H 0.12 1.14 7.90 -51.93 -0.41 0.73 16 42 H 0.10 0.48 8.03 -51.93 -0.42 0.06 16 43 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.18 1.66 8.06 -52.48 -0.42 1.24 16 47 H 0.08 1.55 7.74 -51.93 -0.40 1.15 16 48 H 0.08 1.15 4.16 -51.94 -0.22 0.93 16 49 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 51 H 0.38 9.37 5.94 -40.82 -0.24 9.13 16 52 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 409.28 15.07 6.17 6.17 Total: -1.00 -31.40 409.28 -9.76 -41.15 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: -8.43 Total: 11.26 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -2.72 Total: -3.70 kcal Atomic # 7 Polarization: -61.00 SS G_CDS: 0.16 Total: -60.83 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.09 Total: -10.78 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -31.40 -9.76 -41.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037947728.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.930 kcal (2) G-P(sol) polarization free energy of solvation -31.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds