Wall clock time and date at job start Wed Apr 1 2020 06:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.46891 * 2 1 4 4 H 1.09006 * 109.49668 * 305.06534 * 3 2 1 5 5 C 1.53618 * 109.43266 * 65.28819 * 3 2 1 6 6 N 1.46930 * 108.54497 * 174.72752 * 5 3 2 7 7 C 1.34773 * 120.63590 * 126.36716 * 6 5 3 8 8 O 1.21610 * 119.99702 * 4.01547 * 7 6 5 9 9 C 1.47425 * 120.00269 * 184.01942 * 7 6 5 10 10 C 1.41471 * 126.48619 * 310.29849 * 9 7 6 11 11 N 1.30604 * 108.07193 * 180.02562 * 10 9 7 12 12 N 1.39623 * 108.87378 * 359.97438 * 11 10 9 13 13 C 1.34606 * 108.33686 * 0.04162 * 12 11 10 14 14 C 1.50807 * 124.57103 * 179.90976 * 13 12 11 15 15 C 1.53432 * 108.20820 * 344.37259 * 14 13 12 16 16 C 1.53162 * 109.12941 * 48.31451 * 15 14 13 17 17 C 1.46682 * 127.22712 * 180.02562 * 12 11 10 18 18 C 1.46930 * 118.73497 * 306.09129 * 6 5 3 19 19 C 1.53197 * 108.77266 * 53.86312 * 18 6 5 20 20 C 1.53043 * 109.49671 * 185.00286 * 3 2 1 21 21 H 1.08989 * 109.45125 * 58.66493 * 20 3 2 22 22 N 1.46504 * 109.45613 * 298.69834 * 20 3 2 23 23 C 1.36939 * 119.99684 * 154.93644 * 22 20 3 24 24 H 1.08001 * 119.99961 * 359.97438 * 23 22 20 25 25 C 1.38812 * 119.99689 * 180.02562 * 23 22 20 26 26 N 1.31617 * 120.00432 * 359.97438 * 25 23 22 27 27 Si 1.86808 * 119.99796 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.46739 * 359.97438 * 27 25 23 29 29 H 1.48504 * 109.46754 * 119.99375 * 27 25 23 30 30 H 1.48491 * 109.47175 * 239.99693 * 27 25 23 31 31 H 1.08997 * 109.47723 * 60.00667 * 1 2 3 32 32 H 1.09004 * 109.46938 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47646 * 299.99934 * 1 2 3 34 34 H 1.08997 * 109.47646 * 240.00066 * 2 1 3 35 35 H 1.09001 * 109.47011 * 119.99453 * 2 1 3 36 36 H 1.09001 * 109.74083 * 54.98581 * 5 3 2 37 37 H 1.09006 * 109.66651 * 294.41695 * 5 3 2 38 38 H 1.08008 * 125.95989 * 0.03877 * 10 9 7 39 39 H 1.09000 * 109.71600 * 104.00632 * 14 13 12 40 40 H 1.09001 * 109.71575 * 224.60382 * 14 13 12 41 41 H 1.09002 * 109.50535 * 288.42904 * 15 14 13 42 42 H 1.08998 * 109.53336 * 168.21562 * 15 14 13 43 43 H 1.08998 * 109.45527 * 170.75642 * 16 15 14 44 44 H 1.09001 * 109.46327 * 50.80351 * 16 15 14 45 45 H 1.08996 * 109.57390 * 42.76372 * 17 12 11 46 46 H 1.08997 * 109.68388 * 282.43393 * 17 12 11 47 47 H 1.08999 * 109.58738 * 173.64248 * 18 6 5 48 48 H 1.08996 * 109.58833 * 294.07697 * 18 6 5 49 49 H 1.08990 * 109.50341 * 65.31412 * 19 18 6 50 50 H 1.09002 * 109.49249 * 185.38303 * 19 18 6 51 51 H 0.97003 * 120.00215 * 334.93554 * 22 20 3 52 52 H 0.96993 * 120.00360 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6046 1.9823 -0.8410 5 6 1.6392 2.1263 1.3160 6 7 2.2449 3.4645 1.3506 7 6 1.4856 4.5565 1.5680 8 8 0.3001 4.4344 1.8103 9 6 2.0920 5.8991 1.5120 10 6 3.2694 6.3187 2.1748 11 7 3.4773 7.5730 1.8762 12 7 2.4616 8.0085 1.0229 13 6 1.6203 6.9803 0.8066 14 6 0.3900 7.0496 -0.0628 15 6 0.0616 8.5275 -0.3119 16 6 1.3361 9.2589 -0.7437 17 6 2.3032 9.3461 0.4420 18 6 3.6951 3.5890 1.1498 19 6 4.0735 2.8883 -0.1589 20 6 3.5651 1.4451 -0.1258 21 1 3.8543 0.9370 -1.0456 22 7 4.1506 0.7477 1.0218 23 6 5.3879 0.1708 0.9141 24 1 5.9319 0.2297 -0.0171 25 6 5.9424 -0.4905 2.0013 26 7 5.2793 -0.5626 3.1359 27 14 7.6300 -1.2780 1.8541 28 1 8.1612 -1.0577 0.4849 29 1 8.5498 -0.6665 2.8467 30 1 7.5201 -2.7360 2.1133 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 2.0007 1.5396 2.1606 37 1 0.5540 2.2149 1.3678 38 1 3.8883 5.7081 2.8156 39 1 0.5824 6.5511 -1.0128 40 1 -0.4456 6.5661 0.4434 41 1 -0.3223 8.9746 0.6050 42 1 -0.6883 8.6065 -1.0990 43 1 1.0818 10.2643 -1.0791 44 1 1.8094 8.7130 -1.5598 45 1 3.2707 9.7115 0.0977 46 1 1.9014 10.0270 1.1922 47 1 3.9668 4.6429 1.0917 48 1 4.2207 3.1191 1.9810 49 1 3.6191 3.4148 -0.9981 50 1 5.1576 2.8901 -0.2722 51 1 3.6619 0.6945 1.8581 52 1 5.6669 -1.0244 3.8957 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037948666.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:01 Heat of formation + Delta-G solvation = 41.292302 kcal Electronic energy + Delta-G solvation = -32120.056219 eV Core-core repulsion = 28120.718669 eV Total energy + Delta-G solvation = -3999.337549 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.77124 -39.65419 -37.57628 -36.79341 -34.29213 -33.70534 -32.67589 -31.62496 -30.62267 -29.47829 -29.09895 -27.96381 -25.10103 -24.59056 -23.78961 -23.47965 -22.58948 -21.88509 -20.69298 -19.90246 -18.90964 -18.17424 -17.32495 -17.06026 -16.17252 -15.85478 -15.47037 -14.96896 -14.83396 -14.61167 -14.45823 -14.30406 -14.23251 -13.94380 -13.89774 -13.56897 -13.22232 -13.02217 -12.99529 -12.57272 -12.46708 -12.25965 -12.10982 -11.68363 -11.57800 -11.46656 -11.37099 -11.32717 -11.03075 -10.93676 -10.79958 -10.75936 -10.65838 -10.25744 -10.19781 -10.10949 -9.73683 -9.54828 -9.50704 -9.34122 -8.89255 -8.54794 -8.08052 -6.93898 -5.76391 -3.04444 1.61271 2.22304 2.32944 3.19610 3.43030 3.49285 3.51187 3.56113 4.04603 4.21904 4.32833 4.35798 4.59813 4.74758 4.82593 4.97501 5.01280 5.15829 5.22686 5.23829 5.31889 5.35665 5.41269 5.45374 5.52581 5.60606 5.60964 5.63986 5.67008 5.74171 5.74371 5.83388 5.89122 5.92233 5.99122 6.16182 6.21435 6.27844 6.39702 6.41936 6.46020 6.49332 6.61997 6.72983 6.76816 6.77961 6.83599 7.00102 7.09999 7.56420 7.71736 7.86102 8.42210 8.55816 9.53975 10.11189 10.46397 11.46061 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013401 B = 0.003188 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.906103 B = 8781.565242 C =10046.895105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.102 4.102 4 H 0.065 0.935 5 C 0.120 3.880 6 N -0.593 5.593 7 C 0.594 3.406 8 O -0.556 6.556 9 C -0.276 4.276 10 C 0.083 3.917 11 N -0.297 5.297 12 N -0.363 5.363 13 C 0.139 3.861 14 C -0.065 4.065 15 C -0.126 4.126 16 C -0.138 4.138 17 C 0.132 3.868 18 C 0.110 3.890 19 C -0.148 4.148 20 C 0.179 3.821 21 H 0.049 0.951 22 N -0.718 5.718 23 C -0.235 4.235 24 H 0.069 0.931 25 C -0.012 4.012 26 N -0.931 5.931 27 Si 0.902 3.098 28 H -0.281 1.281 29 H -0.293 1.293 30 H -0.293 1.293 31 H 0.046 0.954 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.192 0.808 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.077 0.923 45 H 0.094 0.906 46 H 0.085 0.915 47 H 0.075 0.925 48 H 0.084 0.916 49 H 0.046 0.954 50 H 0.072 0.928 51 H 0.384 0.616 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.268 18.235 -8.904 22.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.122 4.122 4 H 0.083 0.917 5 C -0.002 4.002 6 N -0.324 5.324 7 C 0.382 3.618 8 O -0.436 6.436 9 C -0.291 4.291 10 C -0.104 4.104 11 N -0.116 5.116 12 N -0.144 5.144 13 C 0.009 3.991 14 C -0.104 4.104 15 C -0.164 4.164 16 C -0.177 4.177 17 C 0.011 3.989 18 C -0.012 4.012 19 C -0.189 4.189 20 C 0.068 3.932 21 H 0.067 0.933 22 N -0.361 5.361 23 C -0.366 4.366 24 H 0.087 0.913 25 C -0.208 4.208 26 N -0.580 5.580 27 Si 0.734 3.266 28 H -0.207 1.207 29 H -0.220 1.220 30 H -0.220 1.220 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.209 0.791 39 H 0.109 0.891 40 H 0.123 0.877 41 H 0.090 0.910 42 H 0.100 0.900 43 H 0.111 0.889 44 H 0.096 0.904 45 H 0.113 0.887 46 H 0.103 0.897 47 H 0.093 0.907 48 H 0.102 0.898 49 H 0.064 0.936 50 H 0.090 0.910 51 H 0.219 0.781 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.926 19.256 -8.697 23.344 hybrid contribution 0.686 -1.164 0.229 1.370 sum -9.240 18.092 -8.467 22.009 Atomic orbital electron populations 1.21850 0.96854 1.00982 1.01336 1.21417 0.94239 0.95824 1.03329 1.21819 0.97348 0.96035 0.96996 0.91669 1.21767 0.98713 0.81554 0.98136 1.47972 1.08777 1.06203 1.69476 1.17265 0.85408 0.82941 0.76209 1.90713 1.15837 1.86770 1.50273 1.19793 1.01968 0.95652 1.11641 1.24158 0.95264 0.92241 0.98738 1.77103 1.10024 1.13436 1.11055 1.48472 1.19042 1.09912 1.37010 1.21179 0.93417 0.87228 0.97318 1.20569 0.93599 0.97587 0.98607 1.21699 0.97422 0.94595 1.02662 1.21995 0.95770 1.02791 0.97101 1.21854 1.01550 0.79899 0.95591 1.21874 0.79153 1.00507 0.99681 1.22500 1.01602 0.99122 0.95673 1.20221 0.89770 0.90656 0.92520 0.93287 1.42485 1.19104 1.63908 1.10589 1.19257 0.93643 1.26719 0.97025 0.91269 1.24690 0.98489 1.01551 0.96052 1.69653 1.38003 1.48125 1.02216 0.86189 0.84400 0.78918 0.77095 1.20683 1.22007 1.22040 0.93444 0.93225 0.92732 0.92112 0.90479 0.90745 0.89615 0.79134 0.89105 0.87696 0.91012 0.89951 0.88888 0.90414 0.88742 0.89695 0.90661 0.89821 0.93567 0.90958 0.78063 0.93610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.68 37.15 0.36 -1.71 16 2 C -0.11 -1.76 5.19 -26.73 -0.14 -1.90 16 3 C -0.10 -1.67 2.15 -90.27 -0.19 -1.86 16 4 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 5 C 0.12 2.06 5.04 -3.49 -0.02 2.05 16 6 N -0.59 -9.96 2.97 -173.76 -0.52 -10.48 16 7 C 0.59 10.14 7.39 -12.52 -0.09 10.05 16 8 O -0.56 -10.76 16.19 5.27 0.09 -10.67 16 9 C -0.28 -4.16 5.12 -105.22 -0.54 -4.70 16 10 C 0.08 1.19 9.66 -16.84 -0.16 1.03 16 11 N -0.30 -4.23 12.54 30.93 0.39 -3.84 16 12 N -0.36 -4.36 4.01 -56.39 -0.23 -4.59 16 13 C 0.14 1.79 6.66 -81.61 -0.54 1.24 16 14 C -0.07 -0.64 6.10 -27.61 -0.17 -0.80 16 15 C -0.13 -0.81 5.98 -26.42 -0.16 -0.97 16 16 C -0.14 -0.75 5.93 -26.52 -0.16 -0.91 16 17 C 0.13 0.99 7.27 -3.81 -0.03 0.97 16 18 C 0.11 1.83 5.64 -3.71 -0.02 1.81 16 19 C -0.15 -2.50 5.78 -26.61 -0.15 -2.66 16 20 C 0.18 3.33 2.53 -67.88 -0.17 3.16 16 21 H 0.05 0.95 8.08 -51.94 -0.42 0.53 16 22 N -0.72 -16.44 3.72 -53.38 -0.20 -16.64 16 23 C -0.24 -6.12 9.93 -15.06 -0.15 -6.27 16 24 H 0.07 1.78 7.83 -52.49 -0.41 1.36 16 25 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 26 N -0.93 -27.03 13.06 55.49 0.72 -26.31 16 27 Si 0.90 21.84 29.55 -169.99 -5.02 16.81 16 28 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 29 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 30 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.75 6.70 -51.93 -0.35 0.40 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.08 1.43 7.70 -51.93 -0.40 1.03 16 36 H 0.07 1.42 6.63 -51.93 -0.34 1.07 16 37 H 0.09 1.47 5.76 -51.93 -0.30 1.17 16 38 H 0.19 2.47 7.62 -52.48 -0.40 2.07 16 39 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.10 1.16 7.80 -51.93 -0.41 0.76 16 41 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 42 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.08 0.46 8.12 -51.93 -0.42 0.03 16 45 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.08 1.14 4.54 -51.93 -0.24 0.90 16 48 H 0.08 1.59 7.74 -51.93 -0.40 1.19 16 49 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 50 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 51 H 0.38 9.45 5.93 -40.82 -0.24 9.20 16 52 H 0.25 7.22 8.31 -40.82 -0.34 6.89 16 LS Contribution 399.35 15.07 6.02 6.02 Total: -1.00 -31.82 399.35 -9.71 -41.54 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: -8.54 Total: 10.05 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -2.43 Total: -1.89 kcal Atomic # 7 Polarization: -62.03 SS G_CDS: 0.17 Total: -61.86 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.82 -9.71 -41.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037948666.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.831 kcal (2) G-P(sol) polarization free energy of solvation -31.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds