Wall clock time and date at job start Wed Apr 1 2020 06:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 C 1.53001 * 109.46977 * 2 1 4 4 H 1.08998 * 109.49756 * 55.06202 * 3 2 1 5 5 C 1.53199 * 109.49547 * 295.00033 * 3 2 1 6 6 N 1.46927 * 108.77079 * 185.41808 * 5 3 2 7 7 C 1.34778 * 120.62704 * 233.58495 * 6 5 3 8 8 O 1.21608 * 119.99979 * 355.65961 * 7 6 5 9 9 C 1.47428 * 119.99896 * 175.65533 * 7 6 5 10 10 C 1.41468 * 126.48354 * 50.01979 * 9 7 6 11 11 N 1.30608 * 108.07027 * 179.80409 * 10 9 7 12 12 N 1.39629 * 108.87096 * 0.42547 * 11 10 9 13 13 C 1.34604 * 108.34055 * 359.75424 * 12 11 10 14 14 C 1.50802 * 124.57732 * 179.97438 * 13 12 11 15 15 C 1.53445 * 108.20106 * 344.36088 * 14 13 12 16 16 C 1.53165 * 109.12445 * 48.32406 * 15 14 13 17 17 C 1.46685 * 127.22770 * 179.79792 * 12 11 10 18 18 C 1.46921 * 118.74078 * 53.60424 * 6 5 3 19 19 C 1.53184 * 108.78077 * 306.39269 * 18 6 5 20 20 C 1.53040 * 109.49288 * 175.16583 * 3 2 1 21 21 H 1.09003 * 109.46117 * 301.32754 * 20 3 2 22 22 N 1.46491 * 109.46286 * 61.29316 * 20 3 2 23 23 C 1.36940 * 119.99896 * 204.99484 * 22 20 3 24 24 H 1.07994 * 120.00077 * 0.02562 * 23 22 20 25 25 C 1.38816 * 119.99715 * 180.02562 * 23 22 20 26 26 N 1.31616 * 120.00227 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 119.99698 * 180.02562 * 25 23 22 28 28 H 1.48504 * 109.47169 * 89.99802 * 27 25 23 29 29 H 1.48493 * 109.47106 * 209.99992 * 27 25 23 30 30 H 1.48500 * 109.47335 * 330.00169 * 27 25 23 31 31 H 1.08994 * 109.46760 * 299.99868 * 1 2 3 32 32 H 1.08993 * 109.46655 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47127 * 60.00037 * 1 2 3 34 34 H 1.08999 * 109.47127 * 119.99963 * 2 1 3 35 35 H 1.08995 * 109.46612 * 239.99603 * 2 1 3 36 36 H 1.09000 * 109.58402 * 305.20246 * 5 3 2 37 37 H 1.08992 * 109.58447 * 65.48440 * 5 3 2 38 38 H 1.07998 * 125.96999 * 359.97438 * 10 9 7 39 39 H 1.08999 * 109.71783 * 104.01422 * 14 13 12 40 40 H 1.09000 * 109.71588 * 224.66505 * 14 13 12 41 41 H 1.09000 * 109.51535 * 288.43019 * 15 14 13 42 42 H 1.08997 * 109.53044 * 168.22183 * 15 14 13 43 43 H 1.09000 * 109.45353 * 170.74809 * 16 15 14 44 44 H 1.08993 * 109.46000 * 50.78822 * 16 15 14 45 45 H 1.08999 * 109.57898 * 282.35033 * 17 12 11 46 46 H 1.09002 * 109.56923 * 42.73883 * 17 12 11 47 47 H 1.08999 * 109.58470 * 66.18384 * 18 6 5 48 48 H 1.09007 * 109.58566 * 186.45670 * 18 6 5 49 49 H 1.09001 * 109.49990 * 174.58646 * 19 18 6 50 50 H 1.09006 * 109.49764 * 294.68469 * 19 18 6 51 51 H 0.97003 * 120.00255 * 25.00319 * 22 20 3 52 52 H 0.96998 * 120.00150 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6066 1.9816 0.8423 5 6 1.6351 2.1280 -1.3089 6 7 2.2416 3.4656 -1.3494 7 6 1.4817 4.5579 -1.5638 8 8 0.2959 4.4360 -1.8043 9 6 2.0881 5.9005 -1.5067 10 6 3.2608 6.3230 -2.1757 11 7 3.4683 7.5773 -1.8766 12 7 2.4619 8.0072 -1.0094 13 6 1.6243 6.9769 -0.7887 14 6 0.4053 7.0395 0.0969 15 6 0.5145 8.2933 0.9747 16 6 0.8725 9.4935 0.0930 17 6 2.3084 9.3418 -0.4203 18 6 3.6922 3.5898 -1.1522 19 6 4.0742 2.8880 0.1547 20 6 3.5656 1.4448 0.1216 21 1 3.8575 0.9359 1.0402 22 7 4.1480 0.7484 -1.0281 23 6 5.3861 0.1726 -0.9246 24 1 5.9331 0.2316 0.0047 25 6 5.9382 -0.4869 -2.0142 26 7 5.2718 -0.5583 -3.1470 27 14 7.6268 -1.2729 -1.8728 28 1 7.4822 -2.6770 -1.4115 29 1 8.2943 -1.2539 -3.1991 30 1 8.4464 -0.5127 -0.8952 31 1 -0.3632 0.5138 0.8900 32 1 -0.3632 -1.0276 0.0005 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.8933 -0.5139 -0.8899 36 1 1.9908 1.5397 -2.1547 37 1 0.5496 2.2150 -1.3550 38 1 3.8755 5.7153 -2.8232 39 1 -0.4931 7.0983 -0.5175 40 1 0.3629 6.1514 0.7274 41 1 1.2924 8.1466 1.7240 42 1 -0.4394 8.4761 1.4693 43 1 0.7908 10.4102 0.6770 44 1 0.1868 9.5399 -0.7530 45 1 3.0076 9.4581 0.4077 46 1 2.5066 10.1002 -1.1777 47 1 4.2157 3.1208 -1.9854 48 1 3.9645 4.6438 -1.0966 49 1 5.1586 2.8891 0.2649 50 1 3.6220 3.4138 0.9957 51 1 3.6566 0.6952 -1.8628 52 1 5.6574 -1.0195 -3.9082 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037948667.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:07 Heat of formation + Delta-G solvation = 41.599236 kcal Electronic energy + Delta-G solvation = -32125.955883 eV Core-core repulsion = 28126.631644 eV Total energy + Delta-G solvation = -3999.324240 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.77103 -39.66182 -37.58227 -36.79356 -34.29263 -33.71161 -32.68319 -31.62247 -30.62437 -29.47954 -29.09672 -27.97327 -25.10583 -24.59125 -23.79125 -23.47737 -22.58633 -21.88695 -20.69032 -19.88523 -18.93552 -18.15715 -17.34089 -17.08483 -16.19099 -15.73567 -15.50013 -15.01939 -14.80929 -14.63327 -14.51879 -14.30275 -14.14278 -14.02845 -13.85591 -13.57344 -13.22590 -13.02140 -12.99569 -12.56392 -12.46531 -12.25730 -12.12773 -11.66170 -11.56974 -11.48161 -11.37301 -11.33069 -11.03258 -10.92439 -10.81307 -10.75846 -10.65092 -10.25336 -10.20991 -10.13596 -9.73278 -9.54779 -9.50316 -9.34368 -8.88682 -8.55048 -8.07778 -6.93815 -5.76099 -3.04179 1.61347 2.22239 2.33346 3.18792 3.43438 3.49266 3.50597 3.56456 4.04321 4.21632 4.32181 4.34649 4.59990 4.74750 4.82298 4.97803 5.01757 5.15660 5.22649 5.23048 5.33638 5.35870 5.41276 5.45816 5.49141 5.60377 5.60906 5.62475 5.67021 5.74515 5.75768 5.81862 5.89167 5.92308 5.98729 6.16366 6.21555 6.27961 6.39816 6.42007 6.45950 6.49409 6.62035 6.73156 6.76824 6.77952 6.83895 7.00202 7.10152 7.56344 7.71423 7.86275 8.42524 8.55989 9.54180 10.11427 10.46618 11.46293 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013449 B = 0.003187 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.488409 B = 8783.786832 C =10044.137624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.102 4.102 4 H 0.065 0.935 5 C 0.120 3.880 6 N -0.593 5.593 7 C 0.593 3.407 8 O -0.555 6.555 9 C -0.276 4.276 10 C 0.083 3.917 11 N -0.297 5.297 12 N -0.363 5.363 13 C 0.139 3.861 14 C -0.060 4.060 15 C -0.127 4.127 16 C -0.138 4.138 17 C 0.132 3.868 18 C 0.111 3.889 19 C -0.148 4.148 20 C 0.179 3.821 21 H 0.049 0.951 22 N -0.718 5.718 23 C -0.236 4.236 24 H 0.069 0.931 25 C -0.012 4.012 26 N -0.932 5.932 27 Si 0.903 3.097 28 H -0.291 1.291 29 H -0.293 1.293 30 H -0.283 1.283 31 H 0.046 0.954 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.192 0.808 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.077 0.923 45 H 0.086 0.914 46 H 0.094 0.906 47 H 0.083 0.917 48 H 0.075 0.925 49 H 0.072 0.928 50 H 0.046 0.954 51 H 0.384 0.616 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.265 18.269 8.870 22.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.122 4.122 4 H 0.083 0.917 5 C -0.002 4.002 6 N -0.324 5.324 7 C 0.381 3.619 8 O -0.435 6.435 9 C -0.290 4.290 10 C -0.104 4.104 11 N -0.116 5.116 12 N -0.144 5.144 13 C 0.008 3.992 14 C -0.099 4.099 15 C -0.165 4.165 16 C -0.176 4.176 17 C 0.011 3.989 18 C -0.012 4.012 19 C -0.189 4.189 20 C 0.069 3.931 21 H 0.067 0.933 22 N -0.361 5.361 23 C -0.367 4.367 24 H 0.087 0.913 25 C -0.208 4.208 26 N -0.580 5.580 27 Si 0.734 3.266 28 H -0.219 1.219 29 H -0.219 1.219 30 H -0.209 1.209 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.209 0.791 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.090 0.910 42 H 0.101 0.899 43 H 0.111 0.889 44 H 0.096 0.904 45 H 0.104 0.896 46 H 0.112 0.888 47 H 0.102 0.898 48 H 0.093 0.907 49 H 0.090 0.910 50 H 0.064 0.936 51 H 0.219 0.781 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.924 19.297 8.644 23.358 hybrid contribution 0.676 -1.180 -0.218 1.377 sum -9.248 18.117 8.426 22.017 Atomic orbital electron populations 1.21853 0.96855 1.00988 1.01337 1.21418 0.94238 0.95802 1.03339 1.21742 0.97369 0.96044 0.97070 0.91698 1.21667 0.98695 0.81605 0.98200 1.47963 1.08700 1.06195 1.69574 1.17271 0.85411 0.82938 0.76274 1.90720 1.15800 1.86802 1.50151 1.19802 1.02048 0.95733 1.11428 1.24153 0.95215 0.92239 0.98799 1.77107 1.10475 1.13555 1.10466 1.48474 1.19785 1.09934 1.36251 1.21177 0.93563 0.87197 0.97272 1.20504 0.93519 0.99533 0.96310 1.21722 1.03175 0.93683 0.97925 1.21989 0.94834 0.99933 1.00881 1.21863 0.98275 0.80306 0.98444 1.21864 0.79119 1.00503 0.99710 1.22500 1.01609 0.99118 0.95674 1.20217 0.89767 0.90665 0.92497 0.93294 1.42472 1.19005 1.63974 1.10616 1.19209 0.93588 1.26905 0.97012 0.91327 1.24689 0.98478 1.01552 0.96035 1.69644 1.38086 1.48067 1.02216 0.86257 0.84350 0.79338 0.76619 1.21894 1.21922 1.20886 0.93447 0.93217 0.92721 0.92106 0.90470 0.90793 0.89631 0.79140 0.88468 0.88748 0.91031 0.89938 0.88874 0.90412 0.89618 0.88777 0.89838 0.90674 0.90950 0.93565 0.78060 0.93559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.67 37.16 0.36 -1.72 16 2 C -0.11 -1.76 5.19 -26.72 -0.14 -1.90 16 3 C -0.10 -1.67 2.14 -90.50 -0.19 -1.87 16 4 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 5 C 0.12 2.07 5.01 -3.71 -0.02 2.05 16 6 N -0.59 -9.98 2.97 -174.04 -0.52 -10.49 16 7 C 0.59 10.15 7.39 -12.52 -0.09 10.06 16 8 O -0.56 -10.78 16.54 5.27 0.09 -10.70 16 9 C -0.28 -4.15 5.11 -105.21 -0.54 -4.69 16 10 C 0.08 1.19 9.66 -16.84 -0.16 1.03 16 11 N -0.30 -4.23 12.54 30.93 0.39 -3.84 16 12 N -0.36 -4.36 4.01 -56.39 -0.23 -4.58 16 13 C 0.14 1.78 6.66 -81.61 -0.54 1.23 16 14 C -0.06 -0.59 6.11 -27.60 -0.17 -0.75 16 15 C -0.13 -0.81 5.98 -26.42 -0.16 -0.96 16 16 C -0.14 -0.75 5.93 -26.52 -0.16 -0.90 16 17 C 0.13 0.99 7.27 -3.82 -0.03 0.96 16 18 C 0.11 1.84 5.66 -3.72 -0.02 1.81 16 19 C -0.15 -2.51 5.78 -26.61 -0.15 -2.66 16 20 C 0.18 3.34 2.53 -67.89 -0.17 3.17 16 21 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 22 N -0.72 -16.45 3.72 -53.39 -0.20 -16.65 16 23 C -0.24 -6.14 9.93 -15.06 -0.15 -6.29 16 24 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 25 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 26 N -0.93 -27.05 13.06 55.49 0.72 -26.32 16 27 Si 0.90 21.85 29.55 -169.99 -5.02 16.82 16 28 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 29 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 30 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.75 6.69 -51.93 -0.35 0.40 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.08 1.44 7.69 -51.93 -0.40 1.04 16 36 H 0.07 1.41 6.64 -51.93 -0.34 1.07 16 37 H 0.09 1.47 5.75 -51.93 -0.30 1.17 16 38 H 0.19 2.47 7.64 -52.49 -0.40 2.06 16 39 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 42 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 44 H 0.08 0.46 8.12 -51.93 -0.42 0.04 16 45 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.08 1.59 7.74 -51.93 -0.40 1.19 16 48 H 0.08 1.14 4.55 -51.93 -0.24 0.90 16 49 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 50 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 51 H 0.38 9.46 5.94 -40.82 -0.24 9.21 16 52 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 400.03 15.07 6.03 6.03 Total: -1.00 -31.87 400.03 -9.72 -41.59 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -8.55 Total: 10.00 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -2.43 Total: -1.85 kcal Atomic # 7 Polarization: -62.06 SS G_CDS: 0.17 Total: -61.89 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.09 Total: -10.70 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.87 -9.72 -41.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037948667.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.190 kcal (2) G-P(sol) polarization free energy of solvation -31.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds