Wall clock time and date at job start Wed Apr 1 2020 06:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47408 * 2 1 4 4 H 1.09004 * 109.49919 * 55.05924 * 3 2 1 5 5 C 1.53198 * 109.49616 * 295.00211 * 3 2 1 6 6 N 1.46923 * 108.77607 * 185.37841 * 5 3 2 7 7 C 1.34776 * 120.63169 * 233.58188 * 6 5 3 8 8 O 1.21609 * 119.99519 * 5.48579 * 7 6 5 9 9 C 1.47429 * 120.00186 * 185.48402 * 7 6 5 10 10 C 1.41465 * 126.48807 * 39.95139 * 9 7 6 11 11 N 1.30606 * 108.07237 * 180.25333 * 10 9 7 12 12 N 1.39621 * 108.86835 * 359.56637 * 11 10 9 13 13 C 1.34599 * 108.34228 * 0.46582 * 12 11 10 14 14 C 1.50806 * 124.57793 * 179.68496 * 13 12 11 15 15 C 1.53454 * 108.19652 * 344.32663 * 14 13 12 16 16 C 1.53163 * 109.11804 * 48.34964 * 15 14 13 17 17 C 1.46692 * 127.22720 * 180.23811 * 12 11 10 18 18 C 1.46928 * 118.73684 * 53.86092 * 6 5 3 19 19 C 1.53624 * 108.54081 * 306.08938 * 18 6 5 20 20 C 1.53035 * 109.23902 * 54.86196 * 19 18 6 21 21 H 1.08997 * 109.46533 * 58.53311 * 20 19 18 22 22 N 1.46507 * 109.44801 * 178.49369 * 20 19 18 23 23 C 1.36935 * 120.00065 * 275.06195 * 22 20 19 24 24 H 1.07997 * 119.99763 * 359.97438 * 23 22 20 25 25 C 1.38813 * 120.00219 * 179.97438 * 23 22 20 26 26 N 1.31621 * 119.99579 * 0.02562 * 25 23 22 27 27 Si 1.86790 * 120.00227 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.47310 * 60.00427 * 27 25 23 29 29 H 1.48505 * 109.47409 * 180.02562 * 27 25 23 30 30 H 1.48500 * 109.47564 * 300.00376 * 27 25 23 31 31 H 1.08997 * 109.47185 * 299.99843 * 1 2 3 32 32 H 1.08999 * 109.47342 * 60.00041 * 1 2 3 33 33 H 1.08998 * 109.46795 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47524 * 239.99782 * 2 1 3 35 35 H 1.08999 * 109.47342 * 119.99959 * 2 1 3 36 36 H 1.09003 * 109.58604 * 65.58760 * 5 3 2 37 37 H 1.09001 * 109.58650 * 305.16518 * 5 3 2 38 38 H 1.08001 * 125.96263 * 359.97438 * 10 9 7 39 39 H 1.09004 * 109.71704 * 104.00042 * 14 13 12 40 40 H 1.08994 * 109.71540 * 224.65314 * 14 13 12 41 41 H 1.08996 * 109.52760 * 168.23889 * 15 14 13 42 42 H 1.08999 * 109.53110 * 288.46011 * 15 14 13 43 43 H 1.08994 * 109.46008 * 50.78220 * 16 15 14 44 44 H 1.08997 * 109.46140 * 170.73953 * 16 15 14 45 45 H 1.08993 * 109.57853 * 43.05291 * 17 12 11 46 46 H 1.09006 * 109.56786 * 282.67237 * 17 12 11 47 47 H 1.08995 * 109.58934 * 65.92522 * 18 6 5 48 48 H 1.08999 * 109.58276 * 186.34905 * 18 6 5 49 49 H 1.08994 * 109.63535 * 294.86778 * 19 18 6 50 50 H 1.09008 * 109.42793 * 174.72499 * 19 18 6 51 51 H 0.97001 * 119.99921 * 95.05832 * 22 20 19 52 52 H 0.97001 * 119.99862 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9817 0.8423 5 6 1.6350 2.1280 -1.3088 6 7 2.2408 3.4659 -1.3490 7 6 1.4805 4.5579 -1.5635 8 8 0.2705 4.4533 -1.6265 9 6 2.1156 5.8789 -1.7217 10 6 3.3097 6.1592 -2.4265 11 7 3.5447 7.4405 -2.3320 12 7 2.5251 8.0326 -1.5841 13 6 1.6595 7.0712 -1.2124 14 6 0.4221 7.3077 -0.3834 15 6 0.5400 8.6913 0.2696 16 6 0.9452 9.7155 -0.7947 17 6 2.3880 9.4513 -1.2374 18 6 3.6922 3.5903 -1.1572 19 6 4.0733 2.8890 0.1555 20 6 3.5655 1.4457 0.1220 21 1 3.9993 0.9278 -0.7333 22 7 3.9578 0.7618 1.3568 23 6 5.1964 0.1866 1.4571 24 1 5.8839 0.2367 0.6258 25 6 5.5683 -0.4609 2.6273 26 7 4.7301 -0.5224 3.6403 27 14 7.2576 -1.2462 2.7639 28 1 8.3027 -0.2071 2.5813 29 1 7.4071 -1.8691 4.1036 30 1 7.4060 -2.2871 1.7152 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 0.5496 2.2168 -1.3541 37 1 1.9912 1.5400 -2.1547 38 1 3.9228 5.4387 -2.9475 39 1 -0.4603 7.2766 -1.0226 40 1 0.3449 6.5421 0.3886 41 1 -0.4206 8.9740 0.7002 42 1 1.2971 8.6612 1.0532 43 1 0.2802 9.6286 -1.6540 44 1 0.8712 10.7202 -0.3787 45 1 2.6211 10.0643 -2.1080 46 1 3.0704 9.6957 -0.4232 47 1 4.2127 3.1191 -1.9909 48 1 3.9645 4.6443 -1.1024 49 1 3.6207 3.4145 0.9963 50 1 5.1578 2.8906 0.2659 51 1 3.3401 0.7165 2.1034 52 1 4.9901 -0.9746 4.4581 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037948668.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:13 Heat of formation + Delta-G solvation = 39.268187 kcal Electronic energy + Delta-G solvation = -31657.529698 eV Core-core repulsion = 27658.104376 eV Total energy + Delta-G solvation = -3999.425322 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.87834 -39.71338 -37.56608 -36.86314 -34.60630 -33.75039 -32.73734 -31.65410 -30.70677 -29.49274 -29.35057 -28.01758 -25.14882 -24.65005 -23.85112 -23.15024 -22.53541 -21.72746 -20.73113 -20.00659 -19.41732 -18.61848 -17.35886 -17.02019 -16.27717 -15.81706 -15.60434 -15.11557 -14.89870 -14.79798 -14.59259 -14.30984 -14.11959 -13.90028 -13.82610 -13.60492 -13.26458 -13.10262 -13.00267 -12.76569 -12.56222 -12.28615 -12.02267 -11.72498 -11.65801 -11.50132 -11.46297 -11.39824 -11.23823 -10.90612 -10.89046 -10.81820 -10.64122 -10.28857 -10.20816 -10.10766 -9.72901 -9.64774 -9.54367 -9.45343 -8.87128 -8.68808 -8.30456 -6.93462 -5.75519 -3.03779 1.49897 2.12171 2.16428 3.11234 3.43516 3.44184 3.48930 3.49445 3.98806 4.17789 4.29363 4.29744 4.59305 4.62906 4.78683 4.90694 4.96258 5.05478 5.14650 5.19452 5.29992 5.30724 5.33991 5.39450 5.45227 5.46970 5.53271 5.58121 5.62911 5.66557 5.72843 5.74809 5.76463 5.81836 5.96019 6.09204 6.19289 6.21982 6.29025 6.39583 6.42436 6.46070 6.52724 6.66557 6.67718 6.76611 6.89344 7.01839 7.12100 7.44959 7.66511 7.70330 8.41141 8.42954 9.54222 10.12346 10.47281 11.46957 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012980 B = 0.002843 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.597861 B = 9845.197773 C =10821.595767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.103 4.103 4 H 0.069 0.931 5 C 0.121 3.879 6 N -0.600 5.600 7 C 0.596 3.404 8 O -0.553 6.553 9 C -0.283 4.283 10 C 0.081 3.919 11 N -0.297 5.297 12 N -0.362 5.362 13 C 0.148 3.852 14 C -0.060 4.060 15 C -0.129 4.129 16 C -0.138 4.138 17 C 0.131 3.869 18 C 0.103 3.897 19 C -0.149 4.149 20 C 0.184 3.816 21 H 0.047 0.953 22 N -0.720 5.720 23 C -0.237 4.237 24 H 0.069 0.931 25 C -0.013 4.013 26 N -0.933 5.933 27 Si 0.904 3.096 28 H -0.287 1.287 29 H -0.292 1.292 30 H -0.287 1.287 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.048 0.952 34 H 0.056 0.944 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.064 0.936 38 H 0.191 0.809 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.094 0.906 45 H 0.095 0.905 46 H 0.087 0.913 47 H 0.066 0.934 48 H 0.082 0.918 49 H 0.058 0.942 50 H 0.074 0.926 51 H 0.384 0.616 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.868 18.943 -10.717 23.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.123 4.123 4 H 0.087 0.913 5 C -0.002 4.002 6 N -0.332 5.332 7 C 0.384 3.616 8 O -0.432 6.432 9 C -0.297 4.297 10 C -0.106 4.106 11 N -0.116 5.116 12 N -0.143 5.143 13 C 0.017 3.983 14 C -0.099 4.099 15 C -0.167 4.167 16 C -0.176 4.176 17 C 0.010 3.990 18 C -0.021 4.021 19 C -0.190 4.190 20 C 0.073 3.927 21 H 0.065 0.935 22 N -0.361 5.361 23 C -0.368 4.368 24 H 0.087 0.913 25 C -0.209 4.209 26 N -0.581 5.581 27 Si 0.736 3.264 28 H -0.214 1.214 29 H -0.218 1.218 30 H -0.213 1.213 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.101 0.899 36 H 0.109 0.891 37 H 0.083 0.917 38 H 0.208 0.792 39 H 0.117 0.883 40 H 0.115 0.885 41 H 0.102 0.898 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.112 0.888 45 H 0.113 0.887 46 H 0.105 0.895 47 H 0.084 0.916 48 H 0.100 0.900 49 H 0.077 0.923 50 H 0.092 0.908 51 H 0.218 0.782 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.506 19.910 -11.053 24.309 hybrid contribution 0.598 -1.098 0.616 1.393 sum -7.908 18.812 -10.437 22.921 Atomic orbital electron populations 1.21839 0.96841 1.00953 1.01318 1.21447 0.94346 0.95777 1.03407 1.21769 0.97573 0.96157 0.96842 0.91264 1.21738 0.99434 0.81297 0.97694 1.47957 1.08483 1.06439 1.70309 1.17253 0.85830 0.82703 0.75777 1.90726 1.13815 1.86124 1.52500 1.19789 1.01715 0.93809 1.14435 1.24138 0.95036 0.93231 0.98165 1.77098 1.10130 1.08891 1.15492 1.48505 1.17983 1.07459 1.40319 1.21277 0.93157 0.87767 0.96144 1.20534 0.92991 0.98072 0.98309 1.21742 1.03220 0.93809 0.97898 1.21988 0.94533 1.00859 1.00251 1.21896 0.98480 0.76675 1.01927 1.22130 0.79449 1.01566 0.98939 1.22732 1.01993 0.99108 0.95193 1.20193 0.90823 0.90535 0.91127 0.93455 1.42408 1.16402 1.64472 1.12776 1.19172 0.91810 1.27268 0.98538 0.91311 1.24715 0.98089 1.01620 0.96462 1.69650 1.35279 1.48468 1.04708 0.86311 0.84245 0.79183 0.76693 1.21365 1.21802 1.21331 0.93025 0.93179 0.93250 0.92485 0.89869 0.89113 0.91745 0.79246 0.88349 0.88463 0.89823 0.90946 0.90428 0.88788 0.88700 0.89501 0.91608 0.89955 0.92339 0.90769 0.78235 0.93524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.67 37.16 0.36 -1.77 16 2 C -0.11 -1.82 5.31 -26.73 -0.14 -1.96 16 3 C -0.10 -1.71 1.92 -90.50 -0.17 -1.89 16 4 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 5 C 0.12 1.79 5.33 -3.71 -0.02 1.77 16 6 N -0.60 -8.82 2.97 -173.76 -0.52 -9.34 16 7 C 0.60 9.23 7.47 -12.52 -0.09 9.14 16 8 O -0.55 -9.86 16.14 5.27 0.09 -9.77 16 9 C -0.28 -3.88 5.20 -105.21 -0.55 -4.43 16 10 C 0.08 1.01 9.63 -16.84 -0.16 0.85 16 11 N -0.30 -3.84 12.54 30.93 0.39 -3.45 16 12 N -0.36 -4.05 4.01 -56.40 -0.23 -4.28 16 13 C 0.15 1.79 6.65 -81.62 -0.54 1.25 16 14 C -0.06 -0.58 5.79 -27.60 -0.16 -0.74 16 15 C -0.13 -0.82 5.98 -26.41 -0.16 -0.98 16 16 C -0.14 -0.70 5.93 -26.53 -0.16 -0.86 16 17 C 0.13 0.92 7.27 -3.82 -0.03 0.89 16 18 C 0.10 1.41 5.51 -3.48 -0.02 1.39 16 19 C -0.15 -2.56 5.67 -26.39 -0.15 -2.71 16 20 C 0.18 3.47 2.19 -67.89 -0.15 3.32 16 21 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 22 N -0.72 -17.24 4.33 -53.39 -0.23 -17.47 16 23 C -0.24 -6.33 9.93 -15.06 -0.15 -6.48 16 24 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 25 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 26 N -0.93 -27.68 13.06 55.49 0.72 -26.96 16 27 Si 0.90 22.09 29.55 -169.99 -5.02 17.07 16 28 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 29 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 30 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.65 6.70 -51.93 -0.35 0.30 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.08 1.62 7.22 -51.93 -0.38 1.24 16 36 H 0.09 1.39 5.71 -51.93 -0.30 1.10 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.19 1.90 7.32 -52.49 -0.38 1.51 16 39 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 43 H 0.08 0.42 8.12 -51.93 -0.42 0.00 16 44 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 45 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 48 H 0.08 1.06 4.74 -51.93 -0.25 0.82 16 49 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 50 H 0.07 1.35 8.14 -51.92 -0.42 0.93 16 51 H 0.38 9.94 7.51 -40.82 -0.31 9.64 16 52 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 402.53 15.07 6.07 6.07 Total: -1.00 -32.79 402.53 -9.81 -42.60 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -8.68 Total: 9.20 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -2.39 Total: -3.65 kcal Atomic # 7 Polarization: -61.64 SS G_CDS: 0.14 Total: -61.50 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.79 -9.81 -42.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037948668.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.865 kcal (2) G-P(sol) polarization free energy of solvation -32.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds