Wall clock time and date at job start Wed Apr 1 2020 06:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46632 * 2 1 4 4 H 1.09002 * 109.49809 * 304.93240 * 3 2 1 5 5 C 1.53191 * 109.49987 * 64.99812 * 3 2 1 6 6 N 1.46930 * 108.77777 * 174.61847 * 5 3 2 7 7 C 1.34772 * 120.63296 * 126.36988 * 6 5 3 8 8 O 1.21603 * 119.99864 * 4.28959 * 7 6 5 9 9 C 1.47421 * 120.00139 * 184.29782 * 7 6 5 10 10 C 1.41474 * 126.48419 * 310.45442 * 9 7 6 11 11 N 1.30610 * 108.06940 * 180.02562 * 10 9 7 12 12 N 1.39619 * 108.87478 * 359.97438 * 11 10 9 13 13 C 1.34604 * 108.34109 * 0.03565 * 12 11 10 14 14 C 1.50802 * 124.57892 * 179.97438 * 13 12 11 15 15 C 1.53450 * 108.19617 * 344.32113 * 14 13 12 16 16 C 1.53161 * 109.17917 * 48.30754 * 15 14 13 17 17 C 1.46686 * 127.23113 * 180.02562 * 12 11 10 18 18 C 1.46925 * 118.73575 * 306.64455 * 6 5 3 19 19 C 1.52766 * 109.00956 * 53.30972 * 18 6 5 20 20 C 1.53042 * 109.38244 * 305.58512 * 19 18 6 21 21 H 1.09000 * 109.44627 * 301.22913 * 20 19 18 22 22 N 1.46494 * 109.45938 * 181.26018 * 20 19 18 23 23 C 1.36934 * 120.00124 * 84.93352 * 22 20 19 24 24 H 1.08001 * 120.00039 * 359.97438 * 23 22 20 25 25 C 1.38810 * 120.00364 * 179.97438 * 23 22 20 26 26 N 1.31622 * 119.99695 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00217 * 180.02562 * 25 23 22 28 28 H 1.48495 * 109.47015 * 359.97438 * 27 25 23 29 29 H 1.48500 * 109.47482 * 120.00169 * 27 25 23 30 30 H 1.48505 * 109.47040 * 239.99863 * 27 25 23 31 31 H 1.09003 * 109.46830 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47913 * 299.99896 * 1 2 3 33 33 H 1.09003 * 109.47242 * 60.00365 * 1 2 3 34 34 H 1.09000 * 109.47280 * 240.00398 * 2 1 3 35 35 H 1.08998 * 109.46789 * 119.99541 * 2 1 3 36 36 H 1.09005 * 109.58693 * 54.83186 * 5 3 2 37 37 H 1.09000 * 109.70563 * 294.47451 * 5 3 2 38 38 H 1.08002 * 125.96576 * 359.97438 * 10 9 7 39 39 H 1.08997 * 109.72018 * 224.64767 * 14 13 12 40 40 H 1.08999 * 109.75378 * 104.01791 * 14 13 12 41 41 H 1.08993 * 109.52783 * 168.24057 * 15 14 13 42 42 H 1.09003 * 109.52859 * 288.37989 * 15 14 13 43 43 H 1.09008 * 109.45727 * 50.83045 * 16 15 14 44 44 H 1.08999 * 109.45608 * 170.77513 * 16 15 14 45 45 H 1.09001 * 109.57386 * 282.37639 * 17 12 11 46 46 H 1.09005 * 109.57247 * 42.63258 * 17 12 11 47 47 H 1.09005 * 109.58646 * 173.14145 * 18 6 5 48 48 H 1.09004 * 109.58711 * 293.56966 * 18 6 5 49 49 H 1.08996 * 109.56128 * 185.55291 * 19 18 6 50 50 H 1.08998 * 109.38640 * 65.51008 * 19 18 6 51 51 H 0.97006 * 120.00006 * 264.93491 * 22 20 19 52 52 H 0.97003 * 119.99553 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6064 1.9816 -0.8424 5 6 1.6349 2.1281 1.3087 6 7 2.2406 3.4661 1.3489 7 6 1.4801 4.5580 1.5624 8 8 0.2941 4.4357 1.8015 9 6 2.0859 5.9008 1.5060 10 6 3.2629 6.3212 2.1690 11 7 3.4703 7.5755 1.8698 12 7 2.4548 8.0102 1.0160 13 6 1.6140 6.9815 0.7997 14 6 0.3848 7.0493 -0.0712 15 6 0.0556 8.5271 -0.3213 16 6 1.3295 9.2605 -0.7515 17 6 2.2960 9.3474 0.4343 18 6 3.6903 3.5916 1.1459 19 6 4.0731 2.8891 -0.1556 20 6 3.5654 1.4458 -0.1221 21 1 3.9993 0.9283 0.7335 22 7 3.9577 0.7617 -1.3566 23 6 5.1964 0.1865 -1.4568 24 1 5.8843 0.2376 -0.6258 25 6 5.5679 -0.4622 -2.6264 26 7 4.7298 -0.5240 -3.6394 27 14 7.2574 -1.2474 -2.7627 28 1 8.0036 -1.0392 -1.4959 29 1 7.1078 -2.7029 -3.0163 30 1 8.0040 -0.6237 -3.8847 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3635 0.5138 0.8899 33 1 -0.3634 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.9911 1.5401 2.1547 37 1 0.5495 2.2168 1.3566 38 1 3.8813 5.7116 2.8111 39 1 -0.4515 6.5668 0.4347 40 1 0.5779 6.5498 -1.0206 41 1 -0.6936 8.6052 -1.1090 42 1 -0.3306 8.9744 0.5946 43 1 1.8044 8.7154 -1.5674 44 1 1.0741 10.2656 -1.0871 45 1 1.8926 10.0267 1.1852 46 1 3.2638 9.7141 0.0923 47 1 3.9607 4.6457 1.0837 48 1 4.2176 3.1254 1.9782 49 1 5.1575 2.8909 -0.2659 50 1 3.6209 3.4144 -0.9968 51 1 3.3400 0.7161 -2.1032 52 1 4.9893 -0.9776 -4.4566 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037948669.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:19 Heat of formation + Delta-G solvation = 38.713073 kcal Electronic energy + Delta-G solvation = -31748.412226 eV Core-core repulsion = 27748.962832 eV Total energy + Delta-G solvation = -3999.449393 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.86060 -39.73212 -37.59688 -36.84189 -34.61544 -33.76965 -32.73160 -31.67449 -30.69572 -29.51791 -29.36571 -28.02965 -25.15597 -24.63676 -23.85098 -23.14915 -22.54385 -21.73153 -20.75094 -20.02725 -19.39121 -18.61167 -17.33912 -17.03561 -16.25120 -15.98030 -15.59845 -15.04674 -14.88306 -14.72418 -14.60276 -14.37241 -14.11629 -13.91803 -13.85358 -13.61739 -13.27168 -13.09135 -13.01660 -12.77200 -12.55319 -12.26894 -12.04507 -11.75329 -11.64833 -11.50607 -11.46644 -11.37959 -11.24757 -10.92174 -10.88199 -10.82742 -10.65040 -10.30726 -10.16525 -10.10991 -9.74576 -9.65962 -9.56002 -9.44190 -8.88785 -8.65474 -8.32836 -6.94397 -5.76886 -3.05049 1.53553 2.14361 2.20728 3.01786 3.40575 3.42510 3.48557 3.50425 4.00931 4.19095 4.30670 4.31742 4.58492 4.64393 4.79596 4.91453 4.95151 5.06668 5.13668 5.22091 5.28700 5.31625 5.35458 5.39379 5.45129 5.48750 5.52758 5.59828 5.61906 5.65773 5.73237 5.73785 5.76841 5.83306 5.94724 6.08279 6.18164 6.20673 6.29869 6.39464 6.40904 6.44764 6.51337 6.64794 6.69560 6.74680 6.88024 7.00379 7.10697 7.46668 7.64954 7.70429 8.39229 8.41546 9.53094 10.11047 10.45931 11.45691 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012103 B = 0.002965 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.828960 B = 9442.383877 C =10407.860786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.103 4.103 4 H 0.069 0.931 5 C 0.121 3.879 6 N -0.599 5.599 7 C 0.597 3.403 8 O -0.552 6.552 9 C -0.280 4.280 10 C 0.080 3.920 11 N -0.296 5.296 12 N -0.361 5.361 13 C 0.145 3.855 14 C -0.067 4.067 15 C -0.126 4.126 16 C -0.139 4.139 17 C 0.131 3.869 18 C 0.103 3.897 19 C -0.150 4.150 20 C 0.184 3.816 21 H 0.048 0.952 22 N -0.720 5.720 23 C -0.235 4.235 24 H 0.070 0.930 25 C -0.013 4.013 26 N -0.932 5.932 27 Si 0.904 3.096 28 H -0.281 1.281 29 H -0.292 1.292 30 H -0.293 1.293 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.083 0.917 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.190 0.810 39 H 0.105 0.895 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.094 0.906 45 H 0.085 0.915 46 H 0.095 0.905 47 H 0.083 0.917 48 H 0.066 0.934 49 H 0.074 0.926 50 H 0.057 0.943 51 H 0.384 0.616 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.954 18.352 8.960 22.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.124 4.124 4 H 0.087 0.913 5 C -0.002 4.002 6 N -0.330 5.330 7 C 0.385 3.615 8 O -0.431 6.431 9 C -0.295 4.295 10 C -0.107 4.107 11 N -0.115 5.115 12 N -0.142 5.142 13 C 0.014 3.986 14 C -0.106 4.106 15 C -0.164 4.164 16 C -0.178 4.178 17 C 0.011 3.989 18 C -0.021 4.021 19 C -0.191 4.191 20 C 0.073 3.927 21 H 0.066 0.934 22 N -0.361 5.361 23 C -0.367 4.367 24 H 0.088 0.912 25 C -0.209 4.209 26 N -0.581 5.581 27 Si 0.735 3.265 28 H -0.206 1.206 29 H -0.220 1.220 30 H -0.220 1.220 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.108 0.892 38 H 0.207 0.793 39 H 0.123 0.877 40 H 0.112 0.888 41 H 0.102 0.898 42 H 0.090 0.910 43 H 0.097 0.903 44 H 0.112 0.888 45 H 0.103 0.897 46 H 0.114 0.886 47 H 0.101 0.899 48 H 0.084 0.916 49 H 0.093 0.907 50 H 0.076 0.924 51 H 0.218 0.782 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.606 19.371 9.235 23.122 hybrid contribution 0.604 -1.119 -0.556 1.388 sum -8.003 18.252 8.679 21.737 Atomic orbital electron populations 1.21843 0.96839 1.00996 1.01297 1.21448 0.94348 0.95738 1.03437 1.21773 0.97621 0.96189 0.96772 0.91302 1.21739 0.99368 0.81355 0.97700 1.47998 1.08571 1.06413 1.70030 1.17266 0.85378 0.82914 0.75921 1.90723 1.15685 1.86724 1.49942 1.19751 1.02142 0.95592 1.12027 1.24074 0.95270 0.92374 0.98974 1.77086 1.10038 1.13418 1.11003 1.48482 1.18911 1.10021 1.36797 1.21218 0.93364 0.87143 0.96918 1.20603 0.93504 0.97732 0.98743 1.21697 0.97485 0.94485 1.02697 1.22000 0.95742 1.02906 0.97116 1.21881 1.01672 0.79722 0.95643 1.21928 0.79476 1.01675 0.98980 1.22576 1.02037 0.99115 0.95377 1.20193 0.90792 0.90546 0.91145 0.93432 1.42418 1.16419 1.64454 1.12776 1.19264 0.91761 1.27037 0.98589 0.91196 1.24717 0.98102 1.01643 0.96468 1.69672 1.35178 1.48467 1.04742 0.86168 0.84108 0.78890 0.77332 1.20589 1.21954 1.22006 0.93221 0.93166 0.93039 0.89847 0.92450 0.91725 0.89163 0.79308 0.87664 0.88840 0.89849 0.91044 0.90279 0.88778 0.89656 0.88631 0.89935 0.91590 0.90729 0.92419 0.78247 0.93635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.67 37.16 0.36 -1.75 16 2 C -0.11 -1.80 5.31 -26.73 -0.14 -1.95 16 3 C -0.10 -1.70 1.92 -90.50 -0.17 -1.87 16 4 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 5 C 0.12 1.79 5.31 -3.71 -0.02 1.77 16 6 N -0.60 -8.79 2.98 -174.29 -0.52 -9.31 16 7 C 0.60 9.25 7.39 -12.52 -0.09 9.16 16 8 O -0.55 -9.87 16.18 5.27 0.09 -9.79 16 9 C -0.28 -3.87 5.12 -105.21 -0.54 -4.41 16 10 C 0.08 1.00 9.66 -16.84 -0.16 0.84 16 11 N -0.30 -3.87 12.54 30.93 0.39 -3.48 16 12 N -0.36 -4.11 4.01 -56.40 -0.23 -4.34 16 13 C 0.14 1.77 6.66 -81.61 -0.54 1.23 16 14 C -0.07 -0.65 6.10 -27.60 -0.17 -0.82 16 15 C -0.13 -0.81 5.97 -26.42 -0.16 -0.97 16 16 C -0.14 -0.77 5.93 -26.53 -0.16 -0.93 16 17 C 0.13 0.95 7.27 -3.83 -0.03 0.92 16 18 C 0.10 1.42 5.87 -3.93 -0.02 1.39 16 19 C -0.15 -2.56 5.64 -26.83 -0.15 -2.71 16 20 C 0.18 3.45 2.20 -67.89 -0.15 3.31 16 21 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 22 N -0.72 -17.14 4.33 -53.39 -0.23 -17.38 16 23 C -0.24 -6.27 9.93 -15.06 -0.15 -6.42 16 24 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 25 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 26 N -0.93 -27.55 13.06 55.49 0.72 -26.83 16 27 Si 0.90 22.02 29.55 -169.99 -5.02 17.00 16 28 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 29 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 30 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.64 6.70 -51.93 -0.35 0.29 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.08 1.61 7.22 -51.93 -0.37 1.24 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.09 1.38 5.75 -51.93 -0.30 1.08 16 38 H 0.19 1.88 7.62 -52.49 -0.40 1.48 16 39 H 0.11 1.14 7.80 -51.93 -0.41 0.73 16 40 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 43 H 0.08 0.50 8.12 -51.92 -0.42 0.08 16 44 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.08 1.06 4.55 -51.93 -0.24 0.83 16 48 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 49 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 50 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 51 H 0.38 9.87 7.51 -40.82 -0.31 9.57 16 52 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 402.89 15.07 6.07 6.07 Total: -1.00 -32.73 402.89 -9.80 -42.53 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -8.67 Total: 9.18 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -2.39 Total: -3.67 kcal Atomic # 7 Polarization: -61.47 SS G_CDS: 0.14 Total: -61.33 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.09 Total: -9.79 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.73 -9.80 -42.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037948669.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.245 kcal (2) G-P(sol) polarization free energy of solvation -32.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds