Wall clock time and date at job start Wed Apr 1 2020 05:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.46879 * 2 1 4 4 H 1.08997 * 109.49926 * 304.93470 * 3 2 1 5 5 C 1.53191 * 109.49938 * 65.00035 * 3 2 1 6 6 N 1.46928 * 108.77810 * 174.58494 * 5 3 2 7 7 C 1.34777 * 120.63141 * 126.36491 * 6 5 3 8 8 O 1.21599 * 120.00020 * 354.81599 * 7 6 5 9 9 C 1.47456 * 119.99558 * 175.08407 * 7 6 5 10 10 C 1.39518 * 120.63870 * 322.04202 * 9 7 6 11 11 N 1.31638 * 120.62698 * 180.02562 * 10 9 7 12 12 C 1.32179 * 122.11798 * 0.02562 * 11 10 9 13 13 C 1.37771 * 121.22047 * 359.97438 * 12 11 10 14 14 C 1.39504 * 119.21307 * 359.72270 * 13 12 11 15 15 N 1.38444 * 120.95561 * 180.27943 * 14 13 12 16 16 C 1.46903 * 110.99638 * 300.26447 * 15 14 13 17 17 C 1.46890 * 111.00359 * 64.22040 * 15 14 13 18 18 C 1.46926 * 118.73539 * 306.64458 * 6 5 3 19 19 C 1.52757 * 109.00972 * 53.30751 * 18 6 5 20 20 C 1.53043 * 109.49379 * 184.83658 * 3 2 1 21 21 H 1.08998 * 109.45930 * 58.66534 * 20 3 2 22 22 N 1.46492 * 109.46139 * 298.70233 * 20 3 2 23 23 C 1.36943 * 120.00101 * 155.00155 * 22 20 3 24 24 H 1.07996 * 119.99726 * 359.97438 * 23 22 20 25 25 C 1.38806 * 120.00161 * 180.02562 * 23 22 20 26 26 N 1.31622 * 119.99866 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 120.00096 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.46839 * 60.00132 * 27 25 23 29 29 H 1.48506 * 109.47285 * 179.97438 * 27 25 23 30 30 H 1.48495 * 109.47338 * 299.99962 * 27 25 23 31 31 H 1.09003 * 109.47023 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47614 * 299.99971 * 1 2 3 33 33 H 1.09005 * 109.46971 * 60.00062 * 1 2 3 34 34 H 1.09000 * 109.47049 * 239.99580 * 2 1 3 35 35 H 1.08998 * 109.46868 * 120.00365 * 2 1 3 36 36 H 1.08996 * 109.58525 * 54.79647 * 5 3 2 37 37 H 1.09000 * 109.58427 * 294.37029 * 5 3 2 38 38 H 1.08002 * 119.68859 * 0.02860 * 10 9 7 39 39 H 1.07997 * 119.38739 * 180.02562 * 12 11 10 40 40 H 1.08004 * 120.39170 * 180.02562 * 13 12 11 41 41 H 1.08999 * 109.47026 * 60.00354 * 16 15 14 42 42 H 1.09000 * 109.47375 * 180.02562 * 16 15 14 43 43 H 1.08996 * 109.47386 * 300.00147 * 16 15 14 44 44 H 1.08998 * 109.47300 * 60.00366 * 17 15 14 45 45 H 1.08997 * 109.47309 * 180.02562 * 17 15 14 46 46 H 1.09001 * 109.47128 * 300.00359 * 17 15 14 47 47 H 1.08998 * 109.58311 * 173.14054 * 18 6 5 48 48 H 1.09003 * 109.58729 * 293.56576 * 18 6 5 49 49 H 1.08998 * 109.56743 * 185.55211 * 19 18 6 50 50 H 1.09002 * 109.36095 * 65.49927 * 19 18 6 51 51 H 0.96995 * 120.00226 * 335.00405 * 22 20 3 52 52 H 0.97002 * 120.00006 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9816 -0.8423 5 6 1.6350 2.1280 1.3088 6 7 2.2415 3.4657 1.3493 7 6 1.4814 4.5580 1.5628 8 8 0.2718 4.4534 1.6300 9 6 2.1164 5.8808 1.7089 10 6 3.3268 6.0173 2.3893 11 7 3.8931 7.1983 2.5200 12 6 3.3518 8.2964 2.0217 13 6 2.1581 8.2558 1.3349 14 6 1.5149 7.0304 1.1595 15 7 0.3170 6.9472 0.4704 16 6 -0.7190 7.7653 1.1150 17 6 0.4912 7.3311 -0.9367 18 6 3.6913 3.5904 1.1466 19 6 4.0740 2.8880 -0.1548 20 6 3.5656 1.4449 -0.1216 21 1 3.8574 0.9359 -1.0402 22 7 4.1480 0.7485 1.0281 23 6 5.3861 0.1727 0.9246 24 1 5.9330 0.2316 -0.0048 25 6 5.9377 -0.4876 2.0138 26 7 5.2705 -0.5607 3.1460 27 14 7.6263 -1.2737 1.8724 28 1 8.6307 -0.2322 1.5380 29 1 7.9858 -1.9104 3.1650 30 1 7.6052 -2.3029 0.8022 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.8934 -0.5139 0.8900 36 1 1.9907 1.5397 2.1546 37 1 0.5497 2.2174 1.3538 38 1 3.8036 5.1456 2.8127 39 1 3.8549 9.2427 2.1545 40 1 1.7280 9.1612 0.9329 41 1 -0.3990 8.8070 1.1350 42 1 -1.6496 7.6815 0.5538 43 1 -0.8772 7.4141 2.1346 44 1 1.2128 6.6643 -1.4086 45 1 -0.4650 7.2572 -1.4546 46 1 0.8551 8.3572 -0.9909 47 1 3.9622 4.6444 1.0847 48 1 4.2182 3.1238 1.9791 49 1 5.1584 2.8891 -0.2650 50 1 3.6219 3.4138 -0.9957 51 1 3.6566 0.6952 1.8627 52 1 5.6561 -1.0218 3.9074 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037957908.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:58:58 Heat of formation + Delta-G solvation = 36.594598 kcal Electronic energy + Delta-G solvation = -32378.730025 eV Core-core repulsion = 28379.188768 eV Total energy + Delta-G solvation = -3999.541257 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.11466 -39.52458 -37.69835 -37.46127 -34.45584 -33.73031 -31.87298 -31.56662 -31.27376 -29.40371 -28.41006 -27.88296 -25.80499 -25.27008 -23.86456 -23.79401 -23.29615 -21.77158 -20.77734 -19.90729 -18.42553 -17.52819 -17.31171 -17.12572 -16.70408 -15.83739 -15.35409 -14.88823 -14.83500 -14.72688 -14.50806 -14.34383 -14.06295 -13.96297 -13.67707 -13.52076 -13.24572 -13.14757 -12.91695 -12.64683 -12.54168 -12.43302 -12.22874 -12.12825 -11.97186 -11.66464 -11.36808 -11.04392 -10.94871 -10.77062 -10.71084 -10.28954 -10.24999 -10.18483 -10.02758 -9.75182 -9.73211 -9.52172 -9.43894 -9.18240 -8.88526 -8.71640 -8.14582 -6.95963 -5.77576 -3.05903 0.63296 0.88940 2.97723 3.25180 3.43213 3.46852 3.48554 3.49136 3.66925 4.20737 4.53105 4.58840 4.65669 4.71070 4.85999 4.97552 5.10090 5.14526 5.21527 5.23685 5.32689 5.37936 5.41085 5.43686 5.53640 5.57945 5.59230 5.61155 5.65642 5.73694 5.80769 5.85340 5.90789 5.96874 6.11248 6.18669 6.22450 6.29824 6.38181 6.42233 6.44462 6.56772 6.59613 6.67708 6.73357 6.80833 6.96985 6.99125 7.05993 7.69676 7.71500 7.76607 8.40985 8.48392 9.52691 10.09296 10.44615 11.44653 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012579 B = 0.003519 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.338354 B = 7955.900917 C = 9410.571961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.102 4.102 4 H 0.065 0.935 5 C 0.122 3.878 6 N -0.598 5.598 7 C 0.565 3.435 8 O -0.520 6.520 9 C -0.158 4.158 10 C 0.141 3.859 11 N -0.489 5.489 12 C 0.122 3.878 13 C -0.217 4.217 14 C 0.184 3.816 15 N -0.501 5.501 16 C 0.036 3.964 17 C 0.030 3.970 18 C 0.105 3.895 19 C -0.149 4.149 20 C 0.179 3.821 21 H 0.050 0.950 22 N -0.718 5.718 23 C -0.238 4.238 24 H 0.068 0.932 25 C -0.010 4.010 26 N -0.932 5.932 27 Si 0.903 3.097 28 H -0.287 1.287 29 H -0.292 1.292 30 H -0.287 1.287 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.172 0.828 39 H 0.158 0.842 40 H 0.135 0.865 41 H 0.029 0.971 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.078 0.922 46 H 0.031 0.969 47 H 0.072 0.928 48 H 0.087 0.913 49 H 0.074 0.926 50 H 0.046 0.954 51 H 0.384 0.616 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.604 17.170 -6.369 20.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.122 4.122 4 H 0.084 0.916 5 C 0.000 4.000 6 N -0.331 5.331 7 C 0.352 3.648 8 O -0.397 6.397 9 C -0.164 4.164 10 C -0.018 4.018 11 N -0.197 5.197 12 C -0.034 4.034 13 C -0.239 4.239 14 C 0.081 3.919 15 N -0.221 5.221 16 C -0.110 4.110 17 C -0.116 4.116 18 C -0.018 4.018 19 C -0.190 4.190 20 C 0.069 3.931 21 H 0.068 0.932 22 N -0.360 5.360 23 C -0.369 4.369 24 H 0.086 0.914 25 C -0.206 4.206 26 N -0.580 5.580 27 Si 0.735 3.265 28 H -0.214 1.214 29 H -0.218 1.218 30 H -0.214 1.214 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.189 0.811 39 H 0.175 0.825 40 H 0.153 0.847 41 H 0.047 0.953 42 H 0.095 0.905 43 H 0.092 0.908 44 H 0.089 0.911 45 H 0.096 0.904 46 H 0.049 0.951 47 H 0.090 0.910 48 H 0.106 0.894 49 H 0.093 0.907 50 H 0.065 0.935 51 H 0.219 0.781 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.492 16.599 -5.920 20.017 hybrid contribution 0.488 0.376 -0.317 0.692 sum -9.004 16.975 -6.237 20.202 Atomic orbital electron populations 1.21850 0.96821 1.00951 1.01378 1.21415 0.94264 0.95769 1.03326 1.21735 0.97274 0.96077 0.97133 0.91617 1.21680 0.98819 0.81228 0.98266 1.48013 1.08561 1.06386 1.70121 1.17705 0.86523 0.83017 0.77559 1.90754 1.13158 1.85531 1.50210 1.21112 0.97289 0.94885 1.03150 1.23389 0.89900 0.95862 0.92659 1.67772 1.34073 0.98590 1.19282 1.22739 0.91862 0.97160 0.91592 1.22636 0.98628 0.98748 1.03913 1.18969 0.89955 0.91035 0.91951 1.59055 1.04630 1.56143 1.02321 1.22402 0.94167 0.93782 1.00673 1.22465 1.03057 0.98861 0.87229 1.21978 0.79471 1.00071 1.00265 1.22442 1.01753 0.99311 0.95482 1.20212 0.89807 0.90535 0.92580 0.93203 1.42459 1.18985 1.64005 1.10575 1.19165 0.93605 1.27100 0.97057 0.91364 1.24680 0.98457 1.01437 0.96037 1.69635 1.38064 1.48047 1.02249 0.86332 0.84466 0.79199 0.76536 1.21376 1.21827 1.21426 0.93236 0.92752 0.93414 0.92107 0.90483 0.90688 0.89487 0.81089 0.82487 0.84682 0.95273 0.90475 0.90772 0.91095 0.90352 0.95066 0.91011 0.89440 0.90734 0.93511 0.78081 0.93494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.67 37.16 0.36 -1.73 16 2 C -0.11 -1.75 5.19 -26.73 -0.14 -1.89 16 3 C -0.10 -1.67 2.14 -90.50 -0.19 -1.86 16 4 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 5 C 0.12 2.06 5.04 -3.71 -0.02 2.04 16 6 N -0.60 -9.78 2.98 -174.29 -0.52 -10.30 16 7 C 0.57 9.44 7.21 -12.51 -0.09 9.35 16 8 O -0.52 -9.92 15.48 5.28 0.08 -9.84 16 9 C -0.16 -2.28 5.24 -104.66 -0.55 -2.83 16 10 C 0.14 1.93 8.54 -17.16 -0.15 1.78 16 11 N -0.49 -6.37 10.34 -13.01 -0.13 -6.50 16 12 C 0.12 1.26 11.15 -17.57 -0.20 1.07 16 13 C -0.22 -2.17 8.66 -39.28 -0.34 -2.51 16 14 C 0.18 2.32 4.70 -83.40 -0.39 1.93 16 15 N -0.50 -6.04 3.73 -186.42 -0.69 -6.73 16 16 C 0.04 0.35 9.34 60.07 0.56 0.91 16 17 C 0.03 0.29 9.38 60.06 0.56 0.85 16 18 C 0.10 1.67 4.56 -3.93 -0.02 1.66 16 19 C -0.15 -2.47 5.76 -26.83 -0.15 -2.63 16 20 C 0.18 3.30 2.53 -67.89 -0.17 3.13 16 21 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 22 N -0.72 -16.19 3.72 -53.39 -0.20 -16.39 16 23 C -0.24 -6.13 9.93 -15.06 -0.15 -6.28 16 24 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 25 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 26 N -0.93 -26.73 13.06 55.49 0.72 -26.00 16 27 Si 0.90 21.67 29.55 -169.99 -5.02 16.65 16 28 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 29 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 30 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.75 6.70 -51.93 -0.35 0.40 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.08 1.42 7.69 -51.93 -0.40 1.02 16 36 H 0.07 1.39 6.64 -51.93 -0.34 1.05 16 37 H 0.09 1.48 5.71 -51.93 -0.30 1.19 16 38 H 0.17 2.33 6.31 -52.49 -0.33 2.00 16 39 H 0.16 1.11 8.06 -52.49 -0.42 0.68 16 40 H 0.14 1.00 7.16 -52.48 -0.38 0.63 16 41 H 0.03 0.23 7.17 -51.93 -0.37 -0.15 16 42 H 0.08 0.65 8.12 -51.93 -0.42 0.23 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.08 0.64 8.12 -51.93 -0.42 0.22 16 46 H 0.03 0.24 7.42 -51.93 -0.39 -0.15 16 47 H 0.07 1.04 4.56 -51.93 -0.24 0.80 16 48 H 0.09 1.60 7.69 -51.93 -0.40 1.20 16 49 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 50 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 51 H 0.38 9.29 5.94 -40.82 -0.24 9.04 16 52 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 401.38 15.07 6.05 6.05 Total: -1.00 -30.51 401.38 -9.23 -39.74 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -8.35 Total: 10.71 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: -1.17 Total: 2.62 kcal Atomic # 7 Polarization: -65.11 SS G_CDS: -0.82 Total: -65.93 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.08 Total: -9.84 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -30.51 -9.23 -39.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037957908.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.334 kcal (2) G-P(sol) polarization free energy of solvation -30.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds