Wall clock time and date at job start Wed Apr 1 2020 05:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47123 * 2 1 4 4 H 1.08991 * 109.49958 * 55.06430 * 3 2 1 5 5 C 1.53199 * 109.49475 * 294.99862 * 3 2 1 6 6 N 1.46921 * 108.77346 * 185.41204 * 5 3 2 7 7 C 1.34771 * 120.63398 * 233.58283 * 6 5 3 8 8 O 1.21604 * 119.99778 * 5.81232 * 7 6 5 9 9 C 1.47449 * 120.00313 * 185.80846 * 7 6 5 10 10 C 1.39533 * 120.63452 * 53.81890 * 9 7 6 11 11 N 1.31629 * 120.62830 * 180.02562 * 10 9 7 12 12 C 1.32186 * 122.12026 * 0.02562 * 11 10 9 13 13 C 1.37777 * 121.21877 * 0.02562 * 12 11 10 14 14 C 1.39497 * 119.21168 * 359.97438 * 13 12 11 15 15 N 1.38447 * 120.95379 * 179.72752 * 14 13 12 16 16 C 1.46896 * 110.99756 * 299.99665 * 15 14 13 17 17 C 1.46895 * 111.00028 * 63.95160 * 15 14 13 18 18 C 1.46930 * 118.74003 * 53.86453 * 6 5 3 19 19 C 1.53625 * 108.54111 * 306.09124 * 18 6 5 20 20 C 1.53040 * 109.49818 * 175.16323 * 3 2 1 21 21 H 1.09000 * 109.45901 * 301.33126 * 20 3 2 22 22 N 1.46500 * 109.46051 * 61.29334 * 20 3 2 23 23 C 1.36938 * 119.99922 * 205.00032 * 22 20 3 24 24 H 1.08002 * 120.00279 * 359.97438 * 23 22 20 25 25 C 1.38814 * 120.00195 * 179.97438 * 23 22 20 26 26 N 1.31611 * 120.00169 * 179.97438 * 25 23 22 27 27 Si 1.86805 * 119.99684 * 0.02562 * 25 23 22 28 28 H 1.48491 * 109.47441 * 89.99844 * 27 25 23 29 29 H 1.48501 * 109.46800 * 210.00004 * 27 25 23 30 30 H 1.48503 * 109.47151 * 329.99556 * 27 25 23 31 31 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46984 * 299.99893 * 1 2 3 33 33 H 1.08990 * 109.47076 * 60.00492 * 1 2 3 34 34 H 1.09003 * 109.47412 * 239.99841 * 2 1 3 35 35 H 1.09000 * 109.47122 * 120.00058 * 2 1 3 36 36 H 1.08994 * 109.58610 * 65.62743 * 5 3 2 37 37 H 1.08993 * 109.70184 * 305.26832 * 5 3 2 38 38 H 1.07997 * 119.68982 * 359.97438 * 10 9 7 39 39 H 1.07996 * 119.39346 * 180.02562 * 12 11 10 40 40 H 1.07999 * 120.39306 * 179.97438 * 13 12 11 41 41 H 1.08999 * 109.47234 * 60.00020 * 16 15 14 42 42 H 1.09004 * 109.47133 * 180.02562 * 16 15 14 43 43 H 1.09000 * 109.47569 * 299.99887 * 16 15 14 44 44 H 1.08996 * 109.47504 * 60.00327 * 17 15 14 45 45 H 1.09011 * 109.46970 * 180.02562 * 17 15 14 46 46 H 1.08992 * 109.47410 * 300.00035 * 17 15 14 47 47 H 1.08996 * 109.59012 * 65.92157 * 18 6 5 48 48 H 1.08992 * 109.58957 * 186.34972 * 18 6 5 49 49 H 1.09001 * 109.63536 * 294.86668 * 19 18 6 50 50 H 1.09003 * 109.43263 * 174.72246 * 19 18 6 51 51 H 0.96999 * 120.00256 * 25.00348 * 22 20 3 52 52 H 0.97009 * 120.00293 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6066 1.9816 0.8423 5 6 1.6350 2.1279 -1.3089 6 7 2.2414 3.4655 -1.3494 7 6 1.4816 4.5578 -1.5639 8 8 0.2713 4.4548 -1.6207 9 6 2.1178 5.8776 -1.7296 10 6 3.1201 6.0693 -2.6813 11 7 3.6883 7.2474 -2.8287 12 6 3.3437 8.2909 -2.0941 13 6 2.3644 8.1932 -1.1298 14 6 1.7269 6.9688 -0.9286 15 7 0.7419 6.8286 0.0342 16 6 1.2653 7.1374 1.3715 17 6 -0.4246 7.6642 -0.2805 18 6 3.6929 3.5893 -1.1579 19 6 4.0741 2.8880 0.1547 20 6 3.5656 1.4449 0.1216 21 1 3.8574 0.9360 1.0403 22 7 4.1480 0.7484 -1.0281 23 6 5.3861 0.1726 -0.9245 24 1 5.9334 0.2323 0.0046 25 6 5.9378 -0.4878 -2.0138 26 7 7.1279 -1.0408 -1.9144 27 14 4.9914 -0.5904 -3.6211 28 1 5.3326 0.5778 -4.4719 29 1 5.3557 -1.8430 -4.3308 30 1 3.5336 -0.5878 -3.3382 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5137 -0.8899 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 0.5497 2.2173 -1.3539 37 1 1.9888 1.5405 -2.1560 38 1 3.4333 5.2430 -3.3022 39 1 3.8388 9.2375 -2.2525 40 1 2.0936 9.0542 -0.5369 41 1 1.6294 8.1646 1.3910 42 1 0.4712 7.0189 2.1088 43 1 2.0838 6.4573 1.6074 44 1 -0.8346 7.3672 -1.2457 45 1 -1.1828 7.5353 0.4920 46 1 -0.1218 8.7105 -0.3209 47 1 4.2131 3.1178 -1.9917 48 1 3.9658 4.6431 -1.1034 49 1 3.6219 3.4139 0.9956 50 1 5.1585 2.8892 0.2649 51 1 3.6566 0.6952 -1.8628 52 1 7.5136 -1.5020 -2.6757 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037957915.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:03 Heat of formation + Delta-G solvation = 32.511725 kcal Electronic energy + Delta-G solvation = -32557.041188 eV Core-core repulsion = 28557.322884 eV Total energy + Delta-G solvation = -3999.718304 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.16188 -39.67093 -37.78125 -37.61585 -34.54185 -33.85199 -31.95575 -31.65556 -31.34375 -29.81945 -28.73250 -27.94406 -25.93788 -25.34547 -24.00094 -23.82937 -23.06967 -21.85063 -20.85731 -20.04833 -18.48773 -17.92416 -17.46884 -17.28745 -16.84268 -16.06158 -15.40777 -15.03728 -14.94559 -14.83759 -14.52172 -14.38281 -14.28147 -14.01989 -13.76122 -13.61222 -13.37231 -13.21504 -13.06789 -12.70726 -12.56837 -12.46855 -12.43909 -12.25962 -12.02701 -11.89863 -11.60413 -11.26440 -11.10763 -10.92864 -10.83776 -10.39633 -10.32034 -10.21370 -10.16181 -9.82910 -9.79852 -9.57404 -9.55178 -9.29040 -8.94322 -8.85403 -8.32309 -7.28400 -5.79071 -3.14268 0.60344 0.81740 2.78836 3.11766 3.34256 3.36788 3.38799 3.44013 3.52062 4.13272 4.44610 4.56103 4.56406 4.65564 4.78941 4.92444 4.99216 5.05013 5.13050 5.15872 5.18118 5.24869 5.33458 5.34424 5.37263 5.44542 5.53108 5.53618 5.58507 5.60084 5.65044 5.67713 5.77075 5.82924 5.90339 6.04444 6.07971 6.21837 6.21964 6.28696 6.33328 6.45770 6.47925 6.53540 6.58222 6.68559 6.78163 6.88343 6.92219 7.58774 7.65583 7.97413 8.31659 8.40005 9.18386 9.90986 10.10909 11.39382 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012243 B = 0.003849 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.540415 B = 7273.794952 C = 8417.972503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.105 4.105 4 H 0.072 0.928 5 C 0.120 3.880 6 N -0.600 5.600 7 C 0.574 3.426 8 O -0.527 6.527 9 C -0.154 4.154 10 C 0.142 3.858 11 N -0.485 5.485 12 C 0.121 3.879 13 C -0.212 4.212 14 C 0.180 3.820 15 N -0.507 5.507 16 C 0.028 3.972 17 C 0.036 3.964 18 C 0.112 3.888 19 C -0.147 4.147 20 C 0.185 3.815 21 H 0.060 0.940 22 N -0.743 5.743 23 C -0.240 4.240 24 H 0.090 0.910 25 C 0.008 3.992 26 N -0.933 5.933 27 Si 0.876 3.124 28 H -0.284 1.284 29 H -0.291 1.291 30 H -0.277 1.277 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.066 0.934 38 H 0.165 0.835 39 H 0.159 0.841 40 H 0.136 0.864 41 H 0.033 0.967 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.030 0.970 47 H 0.081 0.919 48 H 0.069 0.931 49 H 0.051 0.949 50 H 0.078 0.922 51 H 0.360 0.640 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.068 18.341 4.838 23.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.125 4.125 4 H 0.091 0.909 5 C -0.002 4.002 6 N -0.333 5.333 7 C 0.360 3.640 8 O -0.403 6.403 9 C -0.160 4.160 10 C -0.017 4.017 11 N -0.194 5.194 12 C -0.035 4.035 13 C -0.234 4.234 14 C 0.076 3.924 15 N -0.227 5.227 16 C -0.118 4.118 17 C -0.111 4.111 18 C -0.011 4.011 19 C -0.188 4.188 20 C 0.075 3.925 21 H 0.078 0.922 22 N -0.387 5.387 23 C -0.370 4.370 24 H 0.108 0.892 25 C -0.188 4.188 26 N -0.581 5.581 27 Si 0.707 3.293 28 H -0.211 1.211 29 H -0.218 1.218 30 H -0.204 1.204 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.108 0.892 37 H 0.084 0.916 38 H 0.182 0.818 39 H 0.176 0.824 40 H 0.154 0.846 41 H 0.051 0.949 42 H 0.097 0.903 43 H 0.091 0.909 44 H 0.094 0.906 45 H 0.096 0.904 46 H 0.048 0.952 47 H 0.099 0.901 48 H 0.087 0.913 49 H 0.070 0.930 50 H 0.097 0.903 51 H 0.194 0.806 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.014 17.794 4.285 22.458 hybrid contribution -0.750 0.640 -0.545 1.126 sum -13.764 18.434 3.740 23.308 Atomic orbital electron populations 1.21851 0.96617 1.01098 1.01503 1.21436 0.94493 0.95723 1.03289 1.21783 0.97324 0.96137 0.97266 0.90932 1.21678 0.99161 0.81351 0.98011 1.48061 1.08646 1.06301 1.70253 1.17700 0.86433 0.83009 0.76845 1.90750 1.13330 1.85608 1.50637 1.21042 0.99674 0.95268 0.99987 1.23085 0.89446 0.95151 0.94025 1.67737 1.26901 0.99495 1.25236 1.22734 0.93101 0.97437 0.90232 1.22631 1.00237 0.98598 1.01938 1.18937 0.90925 0.90961 0.91563 1.59076 1.05936 1.56445 1.01272 1.22495 1.01143 0.99571 0.88612 1.22413 0.91770 0.93589 1.03296 1.21895 0.78947 1.00210 1.00032 1.22549 1.02168 0.98731 0.95324 1.20182 0.89478 0.90621 0.92176 0.92240 1.42835 1.19568 1.65826 1.10458 1.19052 0.91839 1.26886 0.99239 0.89197 1.24622 0.96423 1.00269 0.97499 1.69686 1.16306 1.41313 1.30800 0.86687 0.79659 0.77510 0.85460 1.21074 1.21769 1.20356 0.93110 0.93121 0.92852 0.91105 0.91571 0.89161 0.91586 0.81755 0.82398 0.84588 0.94877 0.90306 0.90914 0.90631 0.90436 0.95151 0.90099 0.91261 0.93021 0.90297 0.80605 0.93086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.67 37.16 0.36 -1.60 16 2 C -0.11 -1.67 5.19 -26.73 -0.14 -1.81 16 3 C -0.11 -1.61 2.14 -90.50 -0.19 -1.80 16 4 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 5 C 0.12 1.89 5.03 -3.71 -0.02 1.88 16 6 N -0.60 -9.26 2.97 -173.77 -0.52 -9.77 16 7 C 0.57 9.06 6.85 -12.51 -0.09 8.97 16 8 O -0.53 -9.64 16.19 5.27 0.09 -9.55 16 9 C -0.15 -2.09 4.64 -104.66 -0.49 -2.58 16 10 C 0.14 1.84 8.95 -17.16 -0.15 1.68 16 11 N -0.49 -6.02 10.34 -13.01 -0.13 -6.15 16 12 C 0.12 1.18 11.15 -17.57 -0.20 0.98 16 13 C -0.21 -1.99 8.65 -39.28 -0.34 -2.33 16 14 C 0.18 2.13 4.72 -83.40 -0.39 1.74 16 15 N -0.51 -5.72 4.22 -186.42 -0.79 -6.50 16 16 C 0.03 0.25 9.34 60.06 0.56 0.81 16 17 C 0.04 0.33 9.38 60.06 0.56 0.89 16 18 C 0.11 1.70 5.34 -3.48 -0.02 1.68 16 19 C -0.15 -2.34 5.79 -26.38 -0.15 -2.49 16 20 C 0.19 3.26 2.53 -67.89 -0.17 3.09 16 21 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 22 N -0.74 -15.91 3.52 -53.38 -0.19 -16.10 16 23 C -0.24 -6.30 10.41 -15.06 -0.16 -6.46 16 24 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 25 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 26 N -0.93 -28.40 13.97 55.49 0.78 -27.63 16 27 Si 0.88 21.37 27.74 -169.99 -4.71 16.66 16 28 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 29 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 30 H -0.28 -6.34 6.52 56.52 0.37 -5.98 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.68 6.70 -51.93 -0.35 0.33 16 34 H 0.07 1.21 7.69 -51.93 -0.40 0.81 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.09 1.44 5.71 -51.93 -0.30 1.14 16 37 H 0.07 1.11 6.65 -51.93 -0.35 0.77 16 38 H 0.17 2.03 7.74 -52.49 -0.41 1.62 16 39 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.14 0.94 7.16 -52.49 -0.38 0.56 16 41 H 0.03 0.23 7.19 -51.93 -0.37 -0.14 16 42 H 0.08 0.59 8.12 -51.93 -0.42 0.17 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.08 0.61 8.12 -51.92 -0.42 0.19 16 46 H 0.03 0.22 7.40 -51.93 -0.38 -0.16 16 47 H 0.08 1.37 7.73 -51.93 -0.40 0.97 16 48 H 0.07 0.96 5.37 -51.93 -0.28 0.68 16 49 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 50 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 51 H 0.36 7.76 3.81 -40.82 -0.16 7.60 16 52 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 402.00 15.07 6.06 6.06 Total: -1.00 -31.93 402.00 -8.96 -40.89 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -8.42 Total: 9.33 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -1.12 Total: 2.77 kcal Atomic # 7 Polarization: -65.31 SS G_CDS: -0.85 Total: -66.16 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.09 Total: -9.55 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.71 Total: 16.66 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.93 -8.96 -40.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037957915.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.404 kcal (2) G-P(sol) polarization free energy of solvation -31.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds