Wall clock time and date at job start Wed Apr 1 2020 05:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47238 * 2 1 4 4 H 1.08995 * 109.49929 * 54.93435 * 3 2 1 5 5 C 1.53194 * 109.52324 * 294.85563 * 3 2 1 6 6 N 1.46923 * 108.77744 * 185.39926 * 5 3 2 7 7 C 1.34778 * 120.63042 * 233.63538 * 6 5 3 8 8 O 1.21598 * 119.99822 * 356.09112 * 7 6 5 9 9 C 1.47449 * 119.99951 * 176.09415 * 7 6 5 10 10 C 1.39539 * 120.63606 * 53.34297 * 9 7 6 11 11 N 1.31634 * 120.62691 * 179.97438 * 10 9 7 12 12 C 1.32186 * 122.11835 * 0.02562 * 11 10 9 13 13 C 1.37768 * 121.21818 * 359.97438 * 12 11 10 14 14 C 1.39500 * 119.21712 * 359.74855 * 13 12 11 15 15 N 1.38454 * 120.95637 * 180.27811 * 14 13 12 16 16 C 1.46896 * 110.99835 * 300.22271 * 15 14 13 17 17 C 1.46901 * 110.99646 * 64.17495 * 15 14 13 18 18 C 1.46934 * 118.73873 * 53.60335 * 6 5 3 19 19 C 1.53186 * 108.77617 * 306.39344 * 18 6 5 20 20 C 1.53034 * 109.49789 * 174.99996 * 3 2 1 21 21 H 1.09006 * 109.46098 * 61.34286 * 20 3 2 22 22 N 1.46495 * 109.46157 * 301.37056 * 20 3 2 23 23 C 1.36939 * 120.00051 * 154.99915 * 22 20 3 24 24 H 1.07994 * 120.00438 * 0.02562 * 23 22 20 25 25 C 1.38812 * 119.99802 * 179.97438 * 23 22 20 26 26 N 1.31620 * 120.00481 * 0.02562 * 25 23 22 27 27 Si 1.86807 * 120.00017 * 180.02562 * 25 23 22 28 28 H 1.48492 * 109.47025 * 60.00088 * 27 25 23 29 29 H 1.48503 * 109.47022 * 300.00441 * 27 25 23 30 30 H 1.48497 * 109.47244 * 180.02562 * 27 25 23 31 31 H 1.09002 * 109.47004 * 299.99978 * 1 2 3 32 32 H 1.09000 * 109.46942 * 59.99885 * 1 2 3 33 33 H 1.08995 * 109.47145 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.47004 * 240.00022 * 2 1 3 35 35 H 1.08999 * 109.47367 * 119.99797 * 2 1 3 36 36 H 1.09002 * 109.58555 * 305.18256 * 5 3 2 37 37 H 1.08997 * 109.58589 * 65.46437 * 5 3 2 38 38 H 1.08002 * 119.68725 * 359.95526 * 10 9 7 39 39 H 1.07996 * 119.38451 * 180.02562 * 12 11 10 40 40 H 1.08004 * 120.38793 * 179.97438 * 13 12 11 41 41 H 1.08994 * 109.47266 * 59.99608 * 16 15 14 42 42 H 1.08996 * 109.46702 * 180.02562 * 16 15 14 43 43 H 1.09001 * 109.46808 * 299.99598 * 16 15 14 44 44 H 1.08999 * 109.47323 * 60.00319 * 17 15 14 45 45 H 1.09003 * 109.46568 * 180.02562 * 17 15 14 46 46 H 1.08997 * 109.47288 * 299.99478 * 17 15 14 47 47 H 1.09001 * 109.58198 * 66.18489 * 18 6 5 48 48 H 1.09006 * 109.58250 * 186.46630 * 18 6 5 49 49 H 1.08995 * 109.50398 * 294.68701 * 19 18 6 50 50 H 1.09004 * 109.50025 * 174.58236 * 19 18 6 51 51 H 0.96998 * 119.99968 * 335.00030 * 22 20 3 52 52 H 0.97001 * 119.99400 * 359.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6048 1.9823 0.8409 5 6 1.6385 2.1275 -1.3101 6 7 2.2451 3.4651 -1.3497 7 6 1.4855 4.5574 -1.5655 8 8 0.2987 4.4358 -1.8004 9 6 2.0939 5.8997 -1.5169 10 6 3.2162 6.2001 -2.2897 11 7 3.7588 7.3986 -2.2466 12 6 3.2756 8.3617 -1.4809 13 6 2.1704 8.1544 -0.6849 14 6 1.5495 6.9053 -0.6938 15 7 0.4334 6.6592 0.0876 16 6 0.7334 6.8587 1.5117 17 6 -0.6989 7.4947 -0.3340 18 6 3.6953 3.5895 -1.1487 19 6 4.0737 2.8882 0.1596 20 6 3.5652 1.4450 0.1257 21 1 4.0009 0.9267 -0.7285 22 7 3.9542 0.7613 1.3616 23 6 5.1924 0.1856 1.4650 24 1 5.8823 0.2358 0.6357 25 6 5.5611 -0.4618 2.6363 26 7 4.7205 -0.5226 3.6473 27 14 7.2504 -1.2466 2.7777 28 1 8.2956 -0.2073 2.5979 29 1 7.4019 -2.2875 1.7294 30 1 7.3963 -1.8694 4.1178 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 1.9965 1.5389 -2.1548 37 1 0.5531 2.2145 -1.3592 38 1 3.6440 5.4420 -2.9290 39 1 3.7556 9.3292 -1.4801 40 1 1.7871 8.9508 -0.0642 41 1 1.0543 7.8875 1.6747 42 1 -0.1602 6.6584 2.1027 43 1 1.5289 6.1777 1.8143 44 1 -0.9447 7.2761 -1.3731 45 1 -1.5622 7.2817 0.2965 46 1 -0.4300 8.5466 -0.2377 47 1 4.2209 3.1201 -1.9803 48 1 3.9673 4.6436 -1.0927 49 1 3.6192 3.4142 0.9991 50 1 5.1578 2.8893 0.2727 51 1 3.3347 0.7165 2.1066 52 1 3.8435 -0.1148 3.5740 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037957920.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:09 Heat of formation + Delta-G solvation = 28.547198 kcal Electronic energy + Delta-G solvation = -32123.490125 eV Core-core repulsion = 28123.599906 eV Total energy + Delta-G solvation = -3999.890219 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.22969 -39.63612 -37.78310 -37.59304 -34.85524 -34.00460 -32.03102 -31.71700 -31.39475 -29.40997 -28.53723 -27.92564 -25.77339 -25.29761 -24.00418 -23.85248 -22.71100 -21.90044 -20.94528 -20.13190 -19.25634 -17.60881 -17.43242 -17.26996 -16.95106 -16.16090 -15.43543 -15.07578 -14.95313 -14.86102 -14.69366 -14.43611 -14.17078 -13.89374 -13.77974 -13.59215 -13.45181 -13.28427 -13.16796 -12.71437 -12.68932 -12.61024 -12.31079 -12.11383 -12.00716 -11.85738 -11.66519 -11.35631 -10.92477 -10.75232 -10.59291 -10.37853 -10.24208 -10.21054 -9.99391 -9.86269 -9.83500 -9.63809 -9.34528 -9.16829 -8.89993 -8.85215 -8.46960 -7.03796 -6.10409 -3.10403 0.54438 0.76471 2.69783 3.02996 3.37965 3.45918 3.50757 3.53725 3.71285 4.04896 4.37014 4.50918 4.61455 4.65691 4.76151 4.93876 4.96853 5.01215 5.14565 5.16017 5.20005 5.22144 5.27278 5.29222 5.32801 5.41886 5.52068 5.58350 5.59487 5.59966 5.63595 5.65837 5.76702 5.85430 5.96329 6.07312 6.09397 6.14970 6.20235 6.29469 6.33819 6.38858 6.47942 6.51435 6.61121 6.75803 6.86249 6.88688 6.98949 7.47440 7.57431 7.79824 8.23504 8.74925 9.21706 10.08202 10.23737 11.37692 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012012 B = 0.003220 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.442094 B = 8694.739023 C = 9532.907308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 C -0.105 4.105 4 H 0.068 0.932 5 C 0.123 3.877 6 N -0.601 5.601 7 C 0.574 3.426 8 O -0.523 6.523 9 C -0.155 4.155 10 C 0.138 3.862 11 N -0.487 5.487 12 C 0.122 3.878 13 C -0.211 4.211 14 C 0.183 3.817 15 N -0.508 5.508 16 C 0.027 3.973 17 C 0.036 3.964 18 C 0.101 3.899 19 C -0.148 4.148 20 C 0.190 3.810 21 H 0.049 0.951 22 N -0.731 5.731 23 C -0.329 4.329 24 H 0.064 0.936 25 C -0.044 4.044 26 N -0.944 5.944 27 Si 1.077 2.923 28 H -0.296 1.296 29 H -0.296 1.296 30 H -0.286 1.286 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.092 0.908 38 H 0.165 0.835 39 H 0.159 0.841 40 H 0.137 0.863 41 H 0.033 0.967 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.030 0.970 47 H 0.070 0.930 48 H 0.077 0.923 49 H 0.056 0.944 50 H 0.075 0.925 51 H 0.367 0.633 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.975 17.016 -10.304 21.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.125 4.125 4 H 0.086 0.914 5 C 0.001 3.999 6 N -0.334 5.334 7 C 0.361 3.639 8 O -0.399 6.399 9 C -0.162 4.162 10 C -0.021 4.021 11 N -0.196 5.196 12 C -0.034 4.034 13 C -0.233 4.233 14 C 0.080 3.920 15 N -0.228 5.228 16 C -0.119 4.119 17 C -0.110 4.110 18 C -0.023 4.023 19 C -0.190 4.190 20 C 0.079 3.921 21 H 0.067 0.933 22 N -0.373 5.373 23 C -0.460 4.460 24 H 0.082 0.918 25 C -0.241 4.241 26 N -0.589 5.589 27 Si 0.908 3.092 28 H -0.224 1.224 29 H -0.223 1.223 30 H -0.211 1.211 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.110 0.890 38 H 0.182 0.818 39 H 0.177 0.823 40 H 0.155 0.845 41 H 0.052 0.948 42 H 0.098 0.902 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.096 0.904 46 H 0.049 0.951 47 H 0.089 0.911 48 H 0.095 0.905 49 H 0.075 0.925 50 H 0.094 0.906 51 H 0.200 0.800 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.862 15.744 -10.134 19.941 hybrid contribution -1.514 1.654 -0.013 2.242 sum -8.376 17.397 -10.147 21.813 Atomic orbital electron populations 1.21841 0.96646 1.01085 1.01403 1.21434 0.94494 0.95653 1.03291 1.21791 0.97581 0.96196 0.96918 0.91355 1.21718 0.99476 0.81091 0.97627 1.48054 1.08418 1.06527 1.70387 1.17696 0.85986 0.83249 0.76992 1.90758 1.14824 1.86177 1.48191 1.21033 0.98343 0.95711 1.01075 1.23051 0.90023 0.93980 0.95055 1.67720 1.30876 1.00800 1.20160 1.22723 0.92221 0.98106 0.90361 1.22655 0.99381 0.98207 1.03033 1.18950 0.90516 0.90728 0.91851 1.59089 1.04024 1.56454 1.03265 1.22510 1.02968 1.00127 0.86301 1.22416 0.92420 0.93548 1.02661 1.22054 0.79547 1.01269 0.99384 1.22636 1.02169 0.99113 0.95054 1.20118 0.90704 0.90391 0.90862 0.93291 1.42411 1.16455 1.65634 1.12777 1.20010 0.92418 1.31984 1.01599 0.91834 1.25705 1.05764 1.00259 0.92405 1.70885 1.08298 1.47610 1.32113 0.83276 0.74257 0.75870 0.75760 1.22351 1.22301 1.21119 0.93041 0.93042 0.93118 0.92316 0.90292 0.91580 0.89012 0.81772 0.82332 0.84488 0.94816 0.90179 0.90825 0.90648 0.90361 0.95134 0.91132 0.90494 0.92520 0.90602 0.80002 0.93405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.67 37.16 0.36 -1.74 16 2 C -0.11 -1.78 5.31 -26.73 -0.14 -1.92 16 3 C -0.10 -1.71 1.92 -90.50 -0.17 -1.89 16 4 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 5 C 0.12 1.80 5.32 -3.71 -0.02 1.78 16 6 N -0.60 -8.64 2.97 -174.02 -0.52 -9.16 16 7 C 0.57 8.70 6.90 -12.51 -0.09 8.62 16 8 O -0.52 -9.33 16.16 5.28 0.09 -9.25 16 9 C -0.16 -2.03 4.93 -104.66 -0.52 -2.55 16 10 C 0.14 1.60 8.60 -17.15 -0.15 1.45 16 11 N -0.49 -5.53 10.34 -13.01 -0.13 -5.66 16 12 C 0.12 1.13 11.15 -17.57 -0.20 0.93 16 13 C -0.21 -1.97 8.65 -39.28 -0.34 -2.31 16 14 C 0.18 2.18 4.72 -83.40 -0.39 1.79 16 15 N -0.51 -5.99 4.19 -186.42 -0.78 -6.77 16 16 C 0.03 0.27 9.34 60.06 0.56 0.83 16 17 C 0.04 0.34 9.38 60.07 0.56 0.90 16 18 C 0.10 1.36 5.51 -3.71 -0.02 1.34 16 19 C -0.15 -2.52 5.66 -26.61 -0.15 -2.67 16 20 C 0.19 3.57 2.19 -67.89 -0.15 3.42 16 21 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 22 N -0.73 -17.35 4.33 -53.39 -0.23 -17.58 16 23 C -0.33 -8.86 9.93 -15.06 -0.15 -9.01 16 24 H 0.06 1.69 7.83 -52.49 -0.41 1.28 16 25 C -0.04 -1.23 5.50 -17.43 -0.10 -1.33 16 26 N -0.94 -28.59 13.70 55.49 0.76 -27.83 16 27 Si 1.08 25.47 29.92 -169.99 -5.09 20.38 16 28 H -0.30 -6.70 7.11 56.52 0.40 -6.30 16 29 H -0.30 -6.69 7.11 56.52 0.40 -6.29 16 30 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.66 6.70 -51.93 -0.35 0.31 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.08 1.51 7.21 -51.93 -0.37 1.14 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.09 1.40 5.75 -51.93 -0.30 1.10 16 38 H 0.17 1.63 7.31 -52.49 -0.38 1.25 16 39 H 0.16 0.98 8.06 -52.49 -0.42 0.55 16 40 H 0.14 0.96 7.16 -52.48 -0.38 0.59 16 41 H 0.03 0.27 7.17 -51.93 -0.37 -0.10 16 42 H 0.08 0.70 8.12 -51.93 -0.42 0.28 16 43 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.08 0.65 8.12 -51.93 -0.42 0.23 16 46 H 0.03 0.23 7.42 -51.93 -0.39 -0.15 16 47 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.08 0.96 4.70 -51.93 -0.24 0.72 16 49 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 50 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 51 H 0.37 9.17 6.34 -40.82 -0.26 8.91 16 52 H 0.25 7.61 6.77 -40.82 -0.28 7.34 16 LS Contribution 405.78 15.07 6.11 6.11 Total: -1.00 -32.85 405.78 -9.32 -42.17 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: -8.44 Total: 9.95 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -1.10 Total: -2.36 kcal Atomic # 7 Polarization: -66.10 SS G_CDS: -0.90 Total: -67.01 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.09 Total: -9.25 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -5.09 Total: 20.38 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.85 -9.32 -42.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037957920.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.718 kcal (2) G-P(sol) polarization free energy of solvation -32.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds